脂多糖结合蛋白与CD14结合位点模拟肽的初步筛选

目的 应用噬菌体随机12肽库筛选脂多糖结合蛋白(lipopolysaccharide binding protein,LBP)与CD14结合位点的多肽序列.方法 以CD14为固相筛选分子,对噬菌体12肽库进行4轮亲合筛选,采用酶联免疫吸附(ELISA)法鉴定筛选后的噬菌体克隆与CD14的结合活性,取结合活性较高的克隆进行DNA测序,推导其多肽序列并与LBP序列比对,再进行竞争抑制实验检测筛选噬菌体与LBP竞争结合CD14的效力.结果 挑取的20个噬菌体克隆中,16个结合实验鉴定阳性,取6个亲和力最高的克隆测序,得到3条不同编码的12肽序列(FHRWPTWPLPSP、MHRHPPPITLPL和AAFHRAHHLTSP),3条多肽与LBP一级结构同源性低,为模拟肽.6个噬菌体克隆有较高的竞争抑制率.结论 用噬菌体12肽库成功筛选出LBP与CD14结合位点的模拟肽.     

噬菌体肽库筛选隐丹参酮高亲和性结合肽

通过噬菌体十二肽库,以隐丹参酮为靶分子,筛选与隐丹参酮具有高亲和性的结合短肽。经过噬菌体十二肽库的3轮淘选,获得阳性噬菌体克隆,挑选结合力强的克隆进行测序,得到隐丹参酮的高亲和性结合短肽序列,并进行生物信息学分析。本试验共筛选到10个隐丹参酮的高亲和性结合短肽序列,有614种蛋白质与其结构相匹配。多肽序列的核心序列为VILDFGEI。本研究获得了与隐丹参酮结合的高亲和性多肽,为深入研究隐丹参酮的作用靶点以及分子作用机制提供了实验依据和结构基础。     

可结合细胞表面IL-2Rα的短肽分子的筛选

目的利用噬菌体肽库技术筛选可特异性结合IL-2Rα的短肽序列，探索获得IL-2Rα小分子拮抗剂的可能性。方法以高表达IL-2Rα的MT-2细胞为钓饵。筛选噬菌体线性12肽库。用抗IL-2Rα单克隆抗体竞争洗脱结合的噬菌体，细胞ELISA、免疫组化鉴定阳性噬菌体克隆，并测序。结果随机挑选的17个克隆中有7个可与MT-2细胞结合。免疫组化显示阳性噬菌体克隆M15可与MT-2细胞及PHA刺激的PBMC结合。根据阳性克隆DNA序列，推导出氨基酸序列，共有6种序列，富含亲水氨基酸并包含Tyr、Phe、Leu保守残基。结论得到含Tyr、Phe保守残基的序列，阳性序列可结合细胞表面的IL-2Rα。     

Screening of specific binding peptide targeting blood vessel of human esophageal cancer in vivo in mice

Background  Cancer of the esophagus and gastroesophageal junction remains a virulent malignancy with poor prognosis. Rapid progresses were made in chemotherapeutic agents and the development of molecular markers allowed better identification of candidates for targeted therapy. This study aimed to identify the candidate peptides used for anti-angiogenic therapy of esophageal cancer by in vivo screening C7C peptide library for peptides binding specifically to blood vessels of human esophageal cancer.

Methods  The phage displayed C7C peptide library was injected intravenously into mice bearing human esophageal tumor xenografts under renal capsule. After 5 rounds of screening, 13 clones were picked up individually and sequenced. During each round of screening, titers of phage recovery were calculated from tumor xenograft and control tissues. Homing of these 9 peptides to tumor vessel was detected by calculating phage titers in the tumor xenograft and control tissues (lung and spleen) after each phage was injected into mice model, and compared with the distribution of phage M13 and VIII-related antigen in tumor xenograft by immunohistochemical staining. Comparisons among groups of data were made using one-way analysis of variance (ANOVA), followed by the Bonferroni multiple comparisons test.

Results  The number of phage recovered from tumor tissue of each round increased gradually in tumor group while decreased in control groups (P <0.01 in tumor and spleen, P <0.05 in lung). Immunohistochemical staining showed similar staining pattern with M13 antibody or VIII-related antigen antibody, suggesting that phages displaying the selected peptides could home to blood vessel of human esophageal cancer. According to their DNA, 9 corresponding peptide sequences were deduced. And the homing ability to blood vessel of phages displaying the selected peptides was confirmed by comparing with their recovery in tumor and control tissues. Two motifs, YSXNXW and PXNXXN, were also obtained by analyzing the homology of these peptide sequences. The staining distribution of phage with the sequence of PNPNNST was similar to that of the blood vessel marker factor VIII-related antigen staining. After sequencing, each phage with the selected peptide of PNPNNST with 1.0×10¹¹ pfu/ml was injected intravenously into mice. The homing ability to tumor vessel of these 9 kinds of peptides in the xenograft was higher than control tissues (lung and spleen).

Conclusion  Nine peptides obtained from in vivo screening homed to the blood vessel of human esophageal cancer, and the two motifs of YSXNXW and PXNXXN are the possible biochemical recognition units binding to vascular endothelial cells of esophageal cancer. 

     

噬菌体展示肽库筛选大肠癌细胞特异性结合肽的实验研究

目的 筛选人源大肠癌LoVo细胞株特异结合的短肽,作为大肠癌靶向治疗的载体.方法 以大肠癌LoVo细胞株作为靶细胞,人正常结肠黏膜上皮细胞为吸附细胞对噬菌体展示环七肽库进行差减筛选,采用细胞ELISA与免疫荧光检测鉴定噬菌体阳性克隆并测序.结果 对噬菌体展示环七肽库进行3轮筛选后,从随机挑取的20个噬菌体克隆中获得5个能与大肠癌LoVo细胞特异结合,而不与人正常结肠黏膜上皮细胞结合的阳性克隆,其氨基酸序列含有保守序列RPMP.结论 利用噬菌体展示肽库技术,可以成功筛选到大肠癌细胞的特异性结合肽,可能成为大肠癌靶向治疗的载体.     

应用噬菌体肽库筛选Endoglin的结合肽

目的 利用噬菌体12肽库筛选可与Endoglin结合的活性小分子肽.方法 以rhEndoglin为靶分子,对噬菌体12肽库进行亲和筛选.经过3轮筛选,随机挑取16个克隆,双夹心ELISA法鉴定其亲和性,测定亲和力高的阳性噬菌体克隆的DNA序列,推断出与噬菌体外壳蛋白融合的氨基酸序列,竞争抑制实验检测优势克隆的特异性.结果 竞争性ELISA显示6个噬菌体克隆与rhEndoglin有较强的结合活性,经测序获得5种不同的多肽序列,其中2个克隆的氨基酸序列为:AHKHVHHVPVRL.结论 噬菌体随机肽库技术可以获得Endoglin结合肽的蛋白质序列.     

骨肉瘤细胞特异性结合短肽的筛选

目的获得与骨肉瘤细胞株os-732特异结合的短肽,作为骨肉瘤靶向治疗的先导化合物。方法以骨肉瘤细胞os-732为靶细胞,成骨细胞为吸附细胞对噬菌体12肽库进行差减筛选,用细胞ELISA、免疫组化鉴定阳性噬菌体克隆并测序。结果经三轮筛选,从随机挑选的20个噬菌体克隆中得到9个能特异性与骨肉瘤细胞os-732结合,而不与正常成骨细胞结合的阳性克隆。但其氨基酸序列无同源性。结论得到多个序列不同的特异性结合骨肉瘤的噬菌体克隆,提示骨肉瘤细胞表面结构复杂,具多个骨肉瘤抗原表位。本实验获得的短肽具有一定的亲合力和肿瘤特异性,为针对不同位点的靶向药物设计提供了实验依据。     

运用噬菌体展示随机肽库筛选与内毒素结合的高亲和性多肽

目的 从噬菌体展示随机肽库中筛选与内毒素结合的多肽序列,并进行鉴定.方法 以内毒素脂多糖(lipopolysaccharide,LPS)为靶分子对噬菌体展示随机十二肽库进行4轮亲和筛选,获得与LPS结合的噬菌体克隆,应用结合实验和克隆斑抑制实验进一步确证.挑选结合力强的克隆进行DNA测序,推导出呈现的多肽序列,应用生物信息学软件进行多肽序列分析和同源性分析.结果 经4轮亲和筛选从噬菌体展示随机十二肽库中筛选获得了86个克隆,挑选12个结合力强的克隆进行DNA序列测序及生物信息学分析,结合本项目组的噬菌体展示随机七肽库筛选结果推导出呈现的多肽序列为HWQWPHWSPPP(命名为P11肽).检索相关数据库发现此肽序列未被申请专利,体内约908种蛋白与其结构相匹配,其中包含有与LPS相互作用的位点.结论 通过对噬菌体展示随机肽库的淘选,获得与LPS结合的高亲和性多肽,为进一步以这些多肽为先导物进行定向进化研究提供了实验依据和结构基础.     

天花粉蛋白结合肽的筛选及潜在靶点蛋白的同源分析

目的 通过噬菌体展示技术,筛选天花粉蛋白(TCS)的结合多肽,并通过蛋白质同源分析,研究TCS在体内可能直接作用的靶点蛋白。方法 用构建的十五肽库和购买的十二肽库分别对TCS进行4轮固相亲和筛选,并通过噬菌体ELISA检验阳性克隆与靶蛋白的亲和力,对阳性克隆进行测序,并将多肽序列与已登记蛋白序列进行同源性分析。结果 每轮筛选的回收率,及多克隆噬菌体ELISA结果显示筛选有效。通过单克隆噬菌体ELISA结果挑取阳性克隆,测序分析得到若干噬菌体展示多肽序列。经蛋白质同源性分析,TCS特异性结合多肽与蛋白激酶C（PKC）的磷酸化位点具有同源序列。结论 噬菌体展示技术是筛选中药成分靶点蛋白的有效手段,PKC可能为TCS潜在的靶点蛋白。      

骨肉瘤细胞特异性结合短肽的筛选

目的：获得与骨肉瘤细胞株os-732特异结合的短肽，作为骨肉瘤靶向治疗的先导化合物。方法：以骨肉瘤细胞os-732为靶细胞，成骨细胞为吸附细胞对噬菌体12肽库进行差减筛选，用细胞ELISA、免疫组化鉴定阳性噬菌体克隆并测序。结果：经三轮筛选，从随机挑选的20个噬菌体克隆中得到9个特异性与骨肉瘤细胞os-732结合，而不与正常成骨细胞结合的阳性克隆。但其氨基酸序列无同源性。结论：得到多个序列不同的特异性结合骨肉瘤的噬菌体克隆，提示骨肉瘤细胞表面结构复杂，具多个骨肉瘤抗原表位。本实验获得的短肽具有一定的亲合力和肿瘤特异性，为针对不同位点的靶向药物设计提供了实验依据。     

Screening of mimotope of Salmonella typhimurium lipopolysaccharide from phage-displayed peptide]

OBJECTIVE: To identify and characterize the mimotope of lipopolysaccharide (LPS) from cyclic 7-mer phage peptide library. METHODS: Cyclic 7-mer phage-displayed peptide library was screened using monoclonal antibody 2F4 (mAb 2F4) against Salmonella typhimurium LPS as the target, and the selected clones were tested by sandwich enzyme-linked immunosorbent assay (ELISA) and specific antigen inhibition ELISA. RESULTS: After 3 round of screening, 34 of the 38 selected clones were identified as positive for binding to mAb 2F4. Salmonella typhimurium LPS was capable of inhibiting the binding between the cones and mAb 2F4, with the 50% inhibitory concentration of all the positive clones within the range of 0.125-0.250 microg/ml. Sequence analysis was performed for 10 of the positive clones, whose amino acid sequences were subsequently deduced, and 7 of them had conservative amino acid of P-X-WAS-X-W with the mean hydrophobic amino acid content of 71.4% in all the sequences. CONCLUSION: The phage-displayed peptide is capable of simulating the epitope of Salmonella typhimurium LPS.     

Screening and Identification of a Novel Hepatocellular Carcinoma Cell Binding Peptide by Using a Phage Display Library

The purpose of this study was to screen peptides that can specifically bind to human hepatocellular carcinoma(hHCC) cells using phage display of random peptide library in order to de-velope a peptide-based carrier for the diagnosis or therapy of hHCC.A peptide 12-mer phage display library was employed and 4 rounds of subtractive panning were performed using the hHCC cell line HepG2 as the target.After panning,the phages that specifically bound to and internalized in hHCC cells were selected.The selected phages demonstrated highly specific affinity to HepG2 cells analyzed by ELISA and immunofluorescence analysis.57.3% of the selected phage clones displayed repeated sequence FLLEPHLMDTSM,and 4 amino acid residues,FLEP were extremely conservative.Based on the sequencing results,a 16-mer peptide(WH-16) was synthesized.The competitive ELISA showed that the binding of the phage clones displayed sequence FLLEPHLMDTSM to HepG2 cells was efficiently inhibited by WH-16.Our findings indicate that cellular binding of phage is mediated via its displayed peptide and the synthesized 16-mer peptide may have the potential to be a delivery carrier in target diagnosis or therapy for hHCC.     

Keratinocyte growth factor (KGF) phage model peptides can promote epidermal cell proliferation without tumorigenic effect

Background KGF significantly influences epithelial wound healing. The aim of this study was to isolate KGF phage model peptides from a phage display 7-mer peptide library to evaluate their effect on promoting epidermal cell proliferation. Methods A phage display 7-mer peptide library was screened using monoclonal anti-human KGF antibody as the target. ELISA was performed to select monoclonal phages with good binding activity. DNA sequencing was done to find the similarities of model peptides. MTT assay, immunofluorescence assay and quantitative real-time PCR analysis were employed to evaluate the effect of the phage model peptides on epidermal cells. Results 56.9% (33/58) of the isolated monoclonal phages exhibited high binding activity by ELISA. Ten of fifteen obtained phage model peptides were similar to KGF or EGF. MTT assay data showed that four (No.1-4) of the ten phage model peptides could promote epidermal cell proliferation. The expression of keratinocyte growth factor receptor (KGFR) mRNA in the KGF control group and the two phage model peptide groups (No.1 and No.2) increased. Expression of c-Fos mRNA and c-Jun mRNA in the KGF control group increased, but did not increase in the four phage model peptide groups (No.1-4). Conclusions Four phage model peptides isolated from the phage display 7-mer peptide library can safely promote epidermal cell proliferation without tumorigenic effect.     

阿尔茨海默病Aβ人抗体可变区片段基因的克隆和表达

目的 筛选出β淀粉样蛋白40 (Aβ40)的人源抗体单链可变区片段,克隆单链抗体的基因并在原核生物大肠杆菌表达,为阿尔茨海默病的诊断和治疗开辟新的途径。方法 先将Aβ40包被在免疫反应板上,后用来自正常人外周血淋巴细胞的单链抗体文库结合。经过5轮的生物淘金法筛选,从最后一轮噬菌体感染的大肠杆菌TGl中随机挑选55个克隆进行ELISA测试,筛选出Aβ40特异的单链抗体并对其进行基因测序。将人源抗体单链可变区片段基因克隆到原核表达载体pGEX-6P-1上,转化大肠杆菌BL21表达谷胱甘肽-s-转移酶(GST)融合的单链抗体。结果 ELISA测试表明,55个克隆中有33个克隆能结合Aβ40,Aβ40对10个克隆的竞争抑制率达到50％以上,而其中5个克隆的抗原结合表位在Aβ40的氨基端1-16个氨基酸之间。DNA测序结果发现,Aβ40单链抗体基因由768bp组成,推导得到的氨基酸序列具有典型的抗体可变区结构。将单链抗体基因克隆到原核表达系统中诱导表达,得到相对分子质量为55000的GST融合抗体表达产物。结论利用非免疫途径筛选出阿尔茨海默病发病中起关键神经元毒性作用的Aβ40的人源抗体单链可变区片段,为该抗体的表达和临床应用打下了基础。     

汉坦病毒核衣壳蛋白mAb B11模拟结合肽的筛选和鉴定

目的：应用噬菌体展示肽文库筛选可与肾综合征出血热病毒mAb B11特异性结合的短肽。方法：采用Protein-A亲和纯化的单抗为筛选配基，对噬菌体展示的随机12肽文库进行生物亲和淘选，夹心ELISA、竞争ELISA鉴定筛选克隆的结合特性，并进一步对阳性克隆进行序列测定和分析。结果：通过4轮淘选，ELISA测定显示筛选到的噬菌体短肽多数能与B11单抗特异性地结合（12／15），序列分析表明8个阳性克隆氨基酸序列分为4组，同源性分析显示核心序列可能为（M／F）HR（H／T）X（H／W）或（R／F）HX（H／T）P（W／M）（L／Y）。结论：基于表位水平的HFRSV特异性诊断试剂的研制和小分子多肽疫苗的设计提供了重要依据     

Keratinocyte growth factor phage model peptides can promote epidermal cell proliferation without tumorigenic effect

Background Keratinocyte growth factor （KGF） significantly influences epithelial wound healing. The aim of this study was to isolate KGF phage model peptides from a phage display 7-mer peptide library to evaluate their effect on promoting epidermal cell proliferation. Methods A phage display 7-mer peptide library was screened using monoclonal anti-human KGF antibody as the target. Enzyme linked immunosorbent assay （ELISA） was performed to select monoclonal phages with good binding activity. DNA sequencing was done to find the similarities of model peptides. Three-（4,5-dimethylthiazol-2-yl） -2,5-diphenyl tetrazolium bromide （MTT） assay, immunofluorescence assay and quantitative real-time PCR analysis were employed to evaluate the effect of the phage model peptides on epidermal cells. Results Thirty-three out of fifty-eight （56.9%） of the isolated monoclonal phages exhibited high binding activity by ELISA. Ten of fifteen obtained phage model peptides were similar to KGF or epidermal growth factor （EGF）. MTT assay data showed that four （No. 1-4） of the ten phage model peptides could promote epidermal cell proliferation. The expression of keratinocyte growth factor receptor （KGFR） mRNA in the KGF control group and the two phage model peptide groups （No. 1 and No. 2） increased. Expression of c-Fos mRNA and c-Jun mRNA in the KGF control group increased, but did not increase in the four phage model peptide groups （No.1-4）. Conclusion Four phage model peptides isolated from the phage display 7-mer peptide library can safely promote epidermal cell proliferation without tumorigenic effect.     

应用噬菌体肽文库筛选肾综合征出血热病毒优势B细胞结合表位肽

目的:应用噬菌体展示肽文库筛选鉴定肾综合征出血热病毒优势B细胞结合表位肽。方法:以Prote in-A纯化的肾综合征出血热患者恢复期血清为筛选配基,对经正常人血清预吸附的噬菌体展示随机12肽文库(或次级肽文库)进行生物亲和淘选;夹心ELISA、竞争ELISA鉴定所获得克隆的结合特性,并进一步对阳性克隆进行序列测定和分析。结果:ELISA测定显示,通过5轮淘选得到的噬菌体克隆半数以上可与筛选血清发生特异性结合;对45个阳性克隆进行序列测定分析,根据其推导的氨基酸序列可大致分为8组,同源性分析显示,Ⅰ~Ⅶ组序列基序可能为LVXKR、LTXR、IXKP、LXPA、VGA、KX IR、EKXP,其中4组基序在病毒结构蛋白氨基酸序列中发现同源区。结论:获得了一组肾综合征出血热病毒(HFRSV)优势B细胞表位肽,HFRSV核蛋白可能是诱导高水平抗体的主要免疫原,研究结果为基于表位的基因工程诊断试剂的研制和多肽疫苗的设计提供依据。     

整合素αvβ3特异性结合肽的筛选及初步鉴定

目的 应用噬菌体随机肽库展示技术筛选能与整合素αvβ3分子具特异性结合功能的小肽分子,并对其功能进行初步鉴定.方法 根据整合素αvβ3分子细胞外配体结合区域的品体结构及蛋白质序列设计①～⑤号5条短肽,并作为筛选配基,分别经过3轮"吸附-洗脱-扩增"后,ELISA鉴定阳性克隆,DNA测序和分析,粘附试验进一步分析化学合成多肽的功能.结果 经3轮亲和筛选后,噬菌体克隆得到有效富集,以⑤号肽为代表,ELISA鉴定显示7个阳性克隆能与⑤号合成短肽有较强结合活性.进行DNA测序,多重序列分析获得2个多肽基序:****HRH,HWR****.粘附试验表明化学合成多肽FITC-HLPWHRH,FITC-HWRLHPH与表达整合素αvβ3的细胞株具有一定的亲和性,且结合能被αvβ3分子配体纤维连接蛋白所抑制.结论 通过噬菌体随机展示肽库技术在体外对合成的短肽进行筛选,可以获得与整合素αvβ3分子具特异性结合能力的小肽分子.     

噬菌体7肽文库筛查类风湿关节炎相关抗体及分析

目的筛选和鉴定与类风湿关节炎(rheumatoid arthritis,RA)患者血清特异性结合的噬菌体7肽,并分析其实际意义。方法采用30例正常人混合血清和30例RA患者混合血清作为筛选配基对噬菌体随机7肽库进行亲和筛选、扩增,获得RA血清特异性结合的噬菌体克隆。用患者混合血清进行Dot-ELISA实验鉴定获得的噬菌体克隆,进一步用RA患者及正常人血清各12例筛选阳性噬菌体的混合克隆。对鉴定的噬菌体克隆进行测序,并分析其同源性。结果获得17个与RA患者混合血清特异性结合的阳性克隆。阳性噬菌体混合克隆与RA患者个体血清反应阳性率明显高于其与正常人血清的反应率。序列分析显示阳性噬菌体克隆的抗原表位之间无共有序列,但与杆菌、球菌等有一定的同源性。结论 RA患者血清中存在与病原体抗原表位结合的抗体成分,提示RA的发病可能与病原体感染有关。     

恶性疟原虫EBA-175与血型糖蛋白A结合位点的鉴定

目的 探索EBA-175与GPA之间的结合信息,为疟疾短肽疫苗及拮抗药物的研制奠定基础.方法 以EBA-175重组蛋白为靶,采用亲和筛选法对噬菌体随机十二肽库进行3轮筛选,通过ELISA、竞争抑制试验、Dot-ELISA及Western blotting等方法鉴定获得的噬菌体短肽与EBA-175之间的结合特性.对阳性克隆进行DNA序列测定,推导其十二肽的氨基酸序列并与GPA氨基酸全序列进行了同源性比较.结果 经3轮亲和筛选后,结合噬菌体得到良好富集.从第3轮洗脱液铺制的琼脂板中随机挑取30个噬菌体单克隆,ELISA检测有27个为阳性,阳性率达90%.竞争性ELISA显示多数阳性噬菌体能竞争抑制EBA-175与其单抗结合.DNA及氨基酸序列分析表明24个噬菌体展示十二肽中共有序列IRR与GPA的114-116位氨基酸同源.结论 阳性噬菌体表达的短肽是EBA-175所识别的模拟表位,IRR几位氨基酸可能对EBA-175与GPA的结合起重要作用.