人偏肺病毒黏附蛋白的二级结构及B细胞表位初步预测

目的预测人偏肺病毒G蛋白的二级结构及B细胞表位。方法分别采用SOPMA方法及HMMTOP程序预测G蛋白的二级结构和跨膜区域；综合分析蛋白的柔性结构、亲水性、表面可及性与抗原性指数，预测G蛋白的抗原表位。结果G蛋白的二级结构主要为柔性区域，占62．1％；廿螺旋占22．37％；β-折叠占15．53％；N端第32～51位氨基酸残基为跨膜区。B细胞表位位于G蛋白N端55—77、80-104、111～126、130～167、178—210区段。结论应用多参数预测G蛋白的二级结构与B细胞表位，为进一步研究蛋白特征、单克隆抗体制备及表位疫苗研制奠定了基础。     

SARS病毒基因组所编码的E蛋白的二级结构和B细胞表位预测

目的：预测SARS病毒E蛋白的B细胞表位和二级结构。方法：以SARS病毒基因组序列为基础，采用Garnier-Robson方法、Chou-Fasman方法和Karplus-Schuhz方法预测E蛋白质的二级结构；用Kyte-Doohttle方案预测蛋白质的亲水性；用Emini方案预测蛋白质的表面可能性；用Jameson-Wolf方案预测氨基酸的抗原性指数。综合评判，预测SAPS病毒E蛋白的B细胞表位。结果：在SARS病毒E蛋白N-端的第1～6、13～19、39～43、47～64区段和第73～76区段有β-折叠中心；第6～12区段和第67～69区段可能形成转角或无规则卷曲，是柔性区域。E蛋白N端第2～13区段和第61～74区段为B细胞优势表位区域。结论：用多参数预测SARS病毒E蛋白的二级结构和B细胞表位，为实验方法探索SARS冠状病毒E蛋白的B细胞表位提供理论依据。     

E血清型沙眼衣原体主要外膜蛋白B细胞表位的预测

基于E血清型沙眼衣原体(Chlamydia trachomatis,CT)主要外膜蛋白(Major outer membrane protein, MOMP)氨基酸序列,采用Hopp-Woods的亲水性方案、Emini表面可及性方案、Jameson-Wolf 抗原指数方案和Janin可及性方案等,辅以对MOMP蛋白的二级结构中的柔性区域及跨膜区域的分析,预测CT MOMP蛋白的B细胞表位.推测最有可能的B细胞表位位于MOMP蛋白N端第73～81区段、217～225区段、第377～386区段、第261～270区段和第161～175区段内或它们的附近.用多参数预测CT MOMP蛋白的B细胞表位,为进一步研究蛋白特性及表位疫苗研制奠定了基础.     

蛇毒C型凝集素家族结构及抗原表位预测

目的:预测和设计蛇毒C型凝集素家族蛋白(CLPs)共同B细胞抗原表位肽。方法:利用expasy蛋白质数据库在线软件Align对CLPs进行序列比对。运用DNAstar和Antheprot软件对蛇毒CLP家族的二级结构和表面特性,如亲水性、表面可及性、免疫原性、柔韧性等,综合各结果预测其抗原表位。采用Swiss-model和SEPPA在线工具进行三维结构和空间表位预测。结果:蛇毒CLP家族存在多个潜在的抗原表位位点,其中46～58区和98～110区肽段为可能的B细胞表位区。结论:综合考虑以上2个肽段家族同源性和表面特征,确定N端附近的46KTWADAEKFCTEQ58为蛇毒CLP可能的共同抗原区。     

鼠TRAM蛋白B细胞表位预测及其免疫原性检测

目的 预测TRAM蛋白的二级结构和B细胞表位,为抗鼠TRAM单克隆抗体制备奠定基础。方法以TRAM蛋白的氨基酸序列为基础,采用Goldkeu计算机分析软件以及网络nnpredict二级结构分析软件对TRAM蛋白二级结构及B细胞表位预测。合成针对该表位的多肽,以此多肽为免疫原免疫兔,对其免疫原性进行检测。结果用多参数预测TRAM蛋白的二级结构和B细胞表位,综合评判表明：TRAM分子的第216～229位氨基酸满足亲水性、可及性和可塑性,在二级结构上位于蛋白伸展结构或无规则卷曲结构内,最可能为其优势B细胞表位。此多肽能诱导机体产生较高的抗体滴度,多克隆抗体具有高的特异性。结论TRAM分子的第216～229位氨基酸为其优势B细胞表位,这为制作B细胞优势短肽单克隆抗体提供了理论依据。     

人类偏肺病毒F蛋白的B细胞表位预测

目的 预测人类偏肺病毒F蛋白的B细胞表位。方法综合分析二级结构、亲水性、表面可及性与抗原性指数，预测F蛋白的抗原表位。结果B细胞表位位于F蛋白N段15-28、88-102、161-189、195-202、206-213、245-257、290-299、302-309、318-334、410-419、515-526区段。结论应用多参数预测F蛋白的B细胞表位，为进一步研究蛋白特征、单克隆抗体制备及表位疫苗研制奠定了基础。     

尤文肉瘤EWS-FLI1蛋白融合区的二级结构及B细胞表位的预测

目的：预测尤文肉瘤EWS—FLI1蛋白融合区的二级结构及B细胞表位。方法：采用SOPM／SOPMA法、Chou—Fasman法和Karplus—Schulz法预测EWS-FLI1蛋白的二级结构；综合分析蛋白的柔性结构、亲水性、表面可及性与抗原性，通过预测数据再确定EWS—FLI1蛋白融合区的抗原表位。结果：EWS—FLI1蛋白的二级结构主要为柔性区域，位于EWS—FLI1蛋白N端5．23-30，32，36-49，62，69—100，118．123，128．132，135，137．170，173—179，183—271，276-286，291—301，317—319，328—331，346—353．396-400，407-408，426-438区段；α螺旋位于N端10—15，34，55，106—107，306—316，340—345，359—362，386，392区段；β折叠位于N端20，22，50—52，65-67，102—107，272，274，289—290，323，325-327，371-375，380-384，422-424，446—447区段；B细胞表位位于N端69-79，99—114，128—152，167．171，194-208，248—265，397-406区段，融合区B细胞表位位于N端248—265区段。结论：应用多参数预测EWS—FLI1蛋白融合区的二级结构与B细胞表位，为蛋白特征及复合表位疫苗的进一步研制奠定了基础。     

过敏蛋白TBb的免疫活性鉴定及其表位预测

目的 对重组的苦荞过敏蛋白TBb进行免疫学活性鉴定,并预测其B细胞表位.方法 根据已获得的苦荞过敏蛋白N端结构域TBb的基因序列,构建原核表达载体pET-32m-TBb,然后转入E.coli BL21(DE3)中表达,表达产物用Ni2+-NTA琼脂糖柱亲和纯化,并用ELISA分析其免疫学活性,综合分析TBb的二级结构、亲水性、可及性、可塑性、抗原性指数,并预测其B细胞表位的分布.结果 获得了纯度95%以上的重组过敏蛋白TBb,获得的重组蛋白能与养麦过敏病人血清中的IgE抗体特异性结合,具有较高的免疫学活性,在TBb蛋白的320个氨基酸残基中,预测到的B细胞表位位于6-17,31-45,50-57,88-94,103-134,138-146,156-163,178-185,192-220,240-260,267-299区段.结论 TBb蛋白的活性分析及B细胞表位的预测为进一步研究该蛋白的分子特征及应用奠定了基础.     

人Izumo蛋白的二级结构及B细胞抗原表位预测

目的:预测人Izumo蛋白的二级结构及B细胞抗原表位.方法:以人Izumo基因序列为基础,按Chou-Fasman和Gamier-Robson方法预测其编码蛋白的二级结构,采用Karplus-Schulz方法预测Izumo蛋白骨架区的柔韧性;按Kyte-Doolittle方法预测其亲水性、Emini方法预测蛋白质表面可能性及Jameson-Wolf方法预测抗原性指数.结果:Chou-Fasman及Gamier-Robson两种方法预测的结果均表明,Izumo蛋白含较多的α螺旋,蛋白第6～17、30～40、88～99、103～120、153～160、173～188、249～260、283～297、334～338和339～346区段可能是α螺旋中心,第21～25、198～200、245～248和320～323区段可能是β折叠中心.用Kyte-Doolittle、Emini和Jameson-wolf方法分别对Izumo蛋白B细胞抗原表位进行预测结果表明,蛋白质第36～42、62～66、94～99、118～122、129～132、151～154、161～164、173～177、205～208、212～216、256～265、271～276、283～288、314～318和336～350区段附近很可能为B细胞表位优势区域.结论:该研究结果有助于确定Izumo蛋白的B细胞优势表位及发挥免疫避孕的活性部位.     

问号钩端螺旋体属特异性外膜蛋白OmpL1和LipL21抗原表位预测及鉴定

目的 筛选问号钩端螺旋体(简称钩体)属特异性外膜蛋白OmpL1和LipL21有效T和B细胞联合抗原表位,为研制多抗原肽(multiple antigenic peptide,MAP)疫苗提供基础.方法 采用生物信息学方法预测OmpL1和LipL21分子中T和B细胞联合抗原表位.采用PCR扩增候选联合抗原表位片段并分别构建其噬菌体展示系统.分别以rOmpL1或rLipL21、黄疸出血群赖株、钩体患者抗血清为一抗,采用Western blot检测各抗血清与目的表位的免疫反应性及其强度.结果 通过抗原表位预测,选择了高分值的4个OmpLl和2个LipL21联合表位.经扩增获得了预期的各抗原表位片段,各目的表位序列均准确插入噬菌体PⅢ蛋白N端并有效表达.各抗血清均能识别上述6个联合表位.其中LipL21的97～112和176-184表位对任一抗血清均显示相似强度的杂交条带.综合4个OmpL1表位对3种抗血清的不同Western blot结果及其实际意义,杂交信号从强到弱依次为173～191、87～98、297～320和59～78表位.结论 所研究的6个联合表位均分别为LipL21和OmpL1的有效抗原表位,其中LipL21的97～112、176～184和OmpL1的87～98、173～191表位可应用于钩体MAP疫苗研制.     

A new modular protein of Cryptosporidium parvum, with ricin B and LCCL domains, expressed in the sporozoite invasive stage

The recombinant SA35 peptide has been described as an antigenic portion of a larger Cryptosporidium parvum protein. We identified and characterized the encoding Cpa135 gene and the entire protein, Cpa135. The Cpa135 gene was found to consist of a single exon of 4671 bp, and the mRNA transcribed in the sporozoites was identified. The predicted 1556 amino-acid protein showed the presence of domains which are widely conserved also in other unrelated phylogenetic groups (i.e. a ricin B and a LCCL motif). Comparison of Cpa135 sequence with genomic and protein databases revealed many related genes in other apicomplexan species and high homology with CCP2 protein from Plasmodium yoelii and Plasmodium berghei. The Cpa135 protein was identified and localized by using a monoclonal antibody (Mab) directed against the SA35 antigen (anti-SA35). In oocyst-sporozoite lysate, the anti-SA35 MAb recognized a 135 kDa protein that forms a protein complex larger than 200 kDa, which is mediated by disulfide bridges. Cpa135 synthesis was up-regulated during the excystation process. After host-cell invasion, Cpa135 gene expression was undetectable up to 48 h, whereas mRNA synthesis was newly observed at 72 h post-infection. The Cpa135 protein was localized in the apical complex, and it was found to be secreted by sporozoites during their gliding. Cpa135 persisted during the intracellular stages of the parasite, and it defined the boundaries of the parasitophorous vacuole in the infected cells. The unique array of domains and the homology with other apicomplexan proteins indicate that the Cpa135 protein is representative of a new family of proteins.     

Cryptosporidium parvum-specific CD4 Th1 cells from sensitized donors responding to both fractionated and recombinant antigenic proteins

T-cell-mediated immunity plays a central role in the host response to Cryptosporidium parvum. Human T-cell clones (TCC) were isolated from peripheral blood mononuclear cells of five healthy donors with prior cryptosporidiosis by use of a C. parvum crude extract, two antigen fractions obtained by ion-exchange chromatography (IEC1 and IEC2), and two recombinant peptides (SA35 and SA40) from C. parvum sporozoites. The T-cell lines derived from the one recently infected donor had a higher proportion (26 to 38%) of T cells exhibiting the gamma/delta T-cell receptor (gamma/delta-TCR) than those from donors who had recovered from cryptosporidiosis several years earlier, suggesting that the gamma/delta T-cell population is involved in the early stage of the infection. The specific TCC had the alpha/beta-TCR, had the phenotype CD45RO(+) CD4(+) CD8(-), and were characterized by either hyperproduction of gamma interferon (IFN-gamma) alone, with a Th1 profile, or IFN-gamma hyperproduction together with interleukin-4 (IL-4) or IL-5 production, with a Th0 profile. SA35, SA40, IEC1, and IEC2 may be considered good targets of the cellular response against C. parvum and may play a role in maintaining the T-cell-mediated memory response to this parasite. Furthermore, the SA35 and SA40 peptides may be regarded as immunodominant antigens involved in the maintenance of the T-cell response in healthy C. parvum-sensitized persons.     

Neutralization-sensitive epitopes are conserved among geographically diverse isolates of Cryptosporidium parvum.

Isolates of Cryptosporidium parvum from New York, Florida, Brazil, Mexico, and Peru were examined for the presence of two sporozoite surface epitopes originally identified in an Iowa isolate by neutralizing monoclonal antibodies (MAbs) 18.44 and 17.41. Immunofluorescence microscopy and immunoblotting demonstrated the presence of both epitopes on all isolates. Incubation of DEAE-cellulose-purified sporozoites of the New York, Florida, Brazil, and Mexico isolates with MAb 18.44 or 17.41 significantly neutralized their infectivity for 4- to 6-day-old BALB/c mice. The results indicate that two neutralization-sensitive epitopes are conserved on geographically diverse C. parvum isolates.     

应用巢式PCR方法诊断微小隐孢子虫感染的实验研究

目的应用巢式PCR扩增方法诊断微小隐孢子虫感染。方法用昆明种小鼠通过免疫抑制方法建立动物模型，通过不连续蔗糖密度梯度离心法分离、纯化隐孢子虫卵囊。抽提DNA后，用巢式PCR扩增隐孢子虫的18S核糖体DNA，电泳、割胶回收后测序。结果成功建立隐孢子虫的小鼠免疫抑制动物模型，纯化后的隐孢子虫卵囊形状均一，呈圆形或椭圆形，大小在3-6um左右。经巢式PCR扩增，在840bp左右有一条特异性条带。通过测序和生物信息学分析，证实该基因序列与微小隐孢子虫18S具有高度同源性。结论巢式PCR方法扩增18S基因是诊断微小隐孢子虫感染的敏感方法。     

Cloning and expression of a cDNA encoding epitopes shared by 15- and 60-kilodalton proteins of Cryptosporidium parvum sporozoites.

A cDNA (CP15/60) encoding epitopes of Cryptosporidium parvum 15- and 60-kDa sporozoite proteins was isolated and expressed in Escherichia coli toward the goal of developing an immunogen for producing high-titer anticryptosporidial colostrum. Antisera prepared in rats to native C. parvum 15-kDa protein and used to identify the CP15/60 bacteriophage clone recognized both 15- and 60-kDa in vitro translation products derived from sporozoite RNA. Antisera specific for recombinant CP15/60 antigen recognized native 15- and 60-kDa C. parvum sporozoite proteins by immunoblotting and identified both surface and internal antigens on C. parvum sporozoites by immunofluorescence staining. Northern (RNA) and Southern blot hybridization experiments using sporozoite RNA and DNA indicated that CP15/60 DNA is transcribed as a single 1.4-kb RNA species from a single-copy gene. Recombinant CP15/60 antigen was recognized by hyperimmune colostrum from cows immunized with C. parvum oocyst-sporozoite protein and by convalescent-phase sera from C. parvum-infected calves.     

Conserved epitopes of simian herpesvirus SA 8 and bovine herpesvirus type 2

Summary Some major structural components of simian herpesvirus SA 8 were analyzed and the relationship of SA 8 with HSV-1 and especially with BHV-2 was further characterized using a panel of SA 8- and BHV-2-specific monoclonal antibodies directed against gB, gD, gE, and ICP 8.It could be shown that SA 8 and BHV-2 expressed gB-1 equivalents, which differ in electrophoretic mobility, but share common epitopes with HSV-1. The antigenic determinants were detectable in the cytoplasm, on the surface of infected cells and on the virus envelope. Monoclonal antibodies reactive with epitopes of gB-SA 8 and gB-BHV-2 neutralized the homologous virus and cross-neutralized only HSV-1 and HSV-2, suggesting differences in accessability of the corresponding epitope on SA 8 and BHV-2, respectively. A second protein with conserved epitopes on SA 8, BHV-2, and HSV-1 was identified as ICP 8. This nucleus associated protein was additionally detected on the envelope of SA 8 and HSV-1. The results imply that ICP 8 might have a function not only in virus replication, but also in virus assembly.We could furthermore define type-specific epitopes on two SA 8 envelope proteins which are analogous to gD-1 and gE-1, respectively. The gD-specific epitope induced a type-specific neutralizing antibody, making it interesting for differentiation of closely related herpesviruses.     

Molecular characterization of Cryptosporidium isolates from human and bovine using 18s rRNA gene in Shahriar county of Tehran, Iran

Cryptosporidiosis is a widespread cause of diarrheal diseases of humans, young calves, and many mammals. Although in recent years molecular investigations on Cryptosporidium have increased, no data are available on Iran in this regard. Two species of Cryptosporidium are known to infect human beings; Cryptosporidium hominis which shows anthroponotic transmission among humans and Cryptosporidium parvum which shows zoonotic transmission between animals and humans. Cryptosporidium oocysts, morphologically identified as C. parvum, were isolated from 24 human and 35 bovine cases in Shahriar (suburb of Tehran, Iran), and genotyped by means of a Nested-polymerase chain reaction/restriction fragment length polymorphism analysis of the 18s rRNA gene. The isolates from bovine samples gave zoonotic or 2 genotype (C. parvum), and DNA profiles of human isolates gave two distinct genotypes, namely an anthroponotic or 1 (C. hominis) and zoonotic genotype or 2 (C. parvum).     

Proteolytic processing of the Cryptosporidium glycoprotein gp40/15 by human furin and by a parasite-derived furin-like protease activity

The apicomplexan parasite Cryptosporidium causes diarrheal disease worldwide. Proteolytic processing of proteins plays a significant role in host cell invasion by apicomplexan parasites. In previous studies, we described gp40/15, a Cryptosporidium sp. glycoprotein that is proteolytically cleaved to yield two surface glycopeptides (gp40 and gp15), which are implicated in mediating infection of host cells. In the present study, we showed that biosynthetically labeled gp40/15 is processed in Cryptosporidium parvum-infected HCT-8 cells. We identified a putative furin cleavage site RSRR downward arrow in the deduced amino acid sequence of gp40/15 from C. parvum and from all Cryptosporidium hominis subtypes except subtype 1e. Both human furin and a protease activity present in a C. parvum lysate cleaved recombinant C. parvum gp40/15 protein into 2 peptides, identified as gp40 and gp15 by size and by immunoreactivity with specific antibodies. C. hominis gp40/15 subtype 1e, in which the RSRR sequence is replaced by ISKR, has an alternative furin cleavage site (KSISKR downward arrow) and was also cleaved by both furin and the C. parvum lysate. Site-directed mutagenesis of the C. parvum RSRR sequence to ASRR resulted in inhibition of cleavage by furin and the C. parvum lysate. Cleavage of recombinant gp40/15 and a synthetic furin substrate by the C. parvum lysate was inhibited by serine protease inhibitors, by the specific furin inhibitor decanoyl-Arg-Val-Lys-Arg-chloromethylketone (Dec-RVKR-cmk), and by calcium chelators, suggesting that the parasite expresses a Ca2+ dependent, furin-like protease activity. The furin inhibitor Dec-RVKR-cmk decreased C. parvum infection of HCT-8 cells, suggesting that a furin-like protease activity may be involved in mediating host-parasite interactions.     

流行性乙型脑炎病毒活疫苗株SA14-14-2基因稳定性研究

目的 通过研究流行性乙型脑炎活疫苗减毒株基因稳定性，从分子水平证实流行性乙型脑炎活疫苗的遗传稳定性。方法分析流行性乙型脑炎活疫苗主种子、工作种子及其相应的疫苗病毒E蛋白基因核苷酸和氨基酸序列，并与其强毒株和基因库中乙脑病毒减毒株(AF15119)比较。结果乙脑活疫苗主种子、工作种子及其相应的疫苗病毒的E蛋白基因核苷酸序列完全相同。这些病毒E蛋白的氨基酸序列与基因库中乙脑病毒弱毒株(AF315119)比较显示第E447位点氨基酸有差异。结论乙脑病毒活疫苗减毒株遗传学特性稳定。     

Cross-reactivity of polyclonal serum antibodies generated against Cryptosporidium parvum oocysts.

Polyclonal antibodies raised against Cryptosporidium parvum oocysts were found to cross-react with Eimeria spp. oocyst antigens in an indirect immunofluorescence assay, and sera from Eimeria spp.-infected lambs reacted with some antigens from sonicated C. parvum oocysts (between 29 to 30 and 66 to 69 kDa) by Western blot (immunoblot). No cross-reaction was observed with cystozoites of Toxoplasma and Sarcocystis spp. These results show the existence of epitopes common to C. parvum and various Eimeria spp.