妊娠高血压综合征胎盘中病理相关基因的表达改变

目的研究与细胞因子信号转导等相关的病理基因在妊娠高血压综合征(妊高征)胎盘组织中的表达变化.方法采用分别包含220余种人类细胞因子相关基因或人类环境激素相关基因cDNA片段的基因芯片,检测严格配伍的正常和妊高征胎盘组织中基因表达谱的差异.结果一些疾病相关基因(GenBank:U82828、X15183)在妊高征患者胎盘中的表达高于正常,另外一些与基因表达调控有关的转录因子基因(GenBank:AL022312、M15990、U15009、L49380等)也表达增强.此外,妊高征胎盘中与细胞因子信号转导有关的大多数受体/激酶表达增强,例如GenBank登录号为M76125、U73531、L76191、L06139、AF035121、M23379、U43195等基因.结论细胞因子信号转导相关基因等的表达增强提示细胞因子的功能活跃,进一步说明胎盘局部细胞因子水平的变化与妊高征的病理发生密切相关.     

高密度cDNA微阵列技术检测乳腺癌差异表达基因

目的 描绘乳腺癌的基因差异表达谱，以寻找乳腺癌新的肿瘤相关候选基因和分子标志。方法 用含14000个cDNA克隆的表达微阵列检测乳腺癌组织、乳腺癌旁组织及乳腺非癌组织的mRNA表达，并分析其表达的差异。结果 乳腺癌组织与乳腺非癌组织比较有80个差异表达基因，乳腺癌组织与乳腺癌旁组织比较有57个差异表达基因，乳腺癌旁组织与乳腺非癌组织比较有29个差异表达基因，在乳腺癌组织与乳腺非癌组织和乳腺癌旁组织比较中有14个差异表达基因是一致的。结论 用微阵列技术对乳腺癌的肿瘤相关基因和分子标志作初步探索，为了解中国女性乳腺癌发生发展的分子机制、发展新的诊断和治疗手段提供了信息。     

塞来昔布对大鼠化学性乳腺癌的抑制作用及机制

目的 观察环氧化酶-2(cyclooxygenase-2,COX-2)选择性抑制剂塞来昔布对化学致癌剂7,12-二甲基苯蒽(7,12-dimethybenz[a]anthracene,DMBA)化学诱发的大鼠乳腺癌的抑制作用并探讨其机制.方法 将DMBA油剂灌胃复制大鼠乳腺癌模型,大鼠分为对照组(24只)和实验组(25只),观察塞来昔布对大鼠乳腺癌的抑制作用,并采用基因芯片技术了解治疗后2组肿瘤的基因表达谱差异.结果 实验组塞来昔布处理后乳腺肿瘤的数目、直径、体积分别为(2.56±1.26)个、(1.162±0.355)cm、(1.967±1.725)cm.;明显小于实验前的(3.40±1.22)个、(1.948±0.481)cm、(8.794±6.389)cm3;明显小于对照组(3.88±1.73)个、(2.231±0.736)cm、(10.268±5.447)cm3,差异有显著性意义(均P＜0.01).对照组COX一2蛋白表达为62.5%(15/24),实验组COX-2蛋白表达为36.0%(9/25),差异有显著性意义(P＜O.05).基因表达谱显示两组之间表达丰度差异2倍及以上的基因共有243条,其中表达上调2倍或以上的基因片段124条,表达下调2倍或以上的基因片段119条,发现功能不明的新基因6条,其中表达上调的4条.结论 塞来昔布能抑制DMBA诱发的大鼠乳腺癌进展,其机制和多种基因改变有关.     

基于图像的微阵列生物芯片分析

利用生物芯片的高通量特性，系统地研究生物体基因和蛋白质表达及其相互作用，在最近十几年迅速发展。以图像为基础的生物芯片分析是生物芯片技术的重要组成部分，对其方法进行研究已成为当前的热点之一。目前很多针对生物芯片的分析方法不断涌现，这些方法涉及网格定位、靶点分割、数据提取和表达、几何校正、噪声消除等生物芯片分析子过程。本研究对以上各类分析方法进行了综述，分析了各类方法的不同应用，比较了多种算法的分析结果，并提出当前在生物芯片分析研究领域需要解决的关键问题。     

Genotypic and phenotypic variability of 22q11.2 microduplications: An institutional experience

Duplications in the 22q11.2 region can cause 22q11.2 duplication syndrome and encompass a variety of phenotypes including developmental delays, facial abnormalities, cardiovascular defects, central nervous system delays, and other congenital abnormalities. However, the contribution of these contiguous duplicated regions to the clinical phenotypes has not been fully elucidated. In this study, we identified nine patients carrying different 22q11.2 microduplications detected by chromosomal microarray. Of these patients, seven pediatric patients presented with various clinical features including two neonate cases died shortly after birth, and two healthy adults. We examined region specific genotype–phenotype associations and found unpredictability associated with 22q11.2 duplications in these nine patients.     

CPP-SOM整合cDNA基因芯片平台的建立

目的　在转录组水平全面迅速地了解疾病发生和药物作用的分子机理 ,以及寻找潜在的治疗靶标。方法　通过建立基因芯片平台 ,用全反式维甲酸诱导急性早幼粒细胞白血病来源的 NB4细胞分化作为模型 ,并应用自主开发的自组织图结合成分平面展示 (componentplane presentation integrated self-organizing map,CPP- SOM)的方法对数据进行初步分析。结果　建立的 c DNA芯片共有 12 6 30条克隆 ,其中已知基因 94 36条。应用该芯片进行实验 ,结果重复性好、准确性高。CPP- SOM不仅可以将功能相关的基因进行聚类 ,而且可以动态性地从全基因组水平观察药物作用过程中基因的表达变化。结论　我们建立的芯片平台是稳定、可靠的技术平台 ,CPP- SOM是一种新型有效的芯片数据的处理方法。     

One hundred years of high-throughput Drosophila research

From the beginning, Drosophila was a high-throughput model organism. Unbiased and genome-wide efforts ranging from Morgan's search for spontaneous mutations and subsequent saturating loss-of-function and gain-of-function screens up to more recent techniques such as microarrays, proteomics and cellular assays have been and will continue to be the backbone of Drosophila research. Integrating these large datasets is one of the next challenges. However, once achieved, a plethora of information far exceeding the information content of the singular experiments will be revealed. Several high-throughput techniques and experimental strategies highlighting the unbiased and integrative nature of Drosophila research during the last century will be discussed.     

DNA microarray analysis reveals novel gene expression profiles in collagen-induced arthritis

Global gene expression was analyzed in early and late collagen-induced arthritis (CIA). Of 8734 cDNAs analyzed, 330 were induced and 55 downregulated greater than twofold in early or late disease. Hierarchical clustering of these 385 cDNAs demonstrated five distinct expression patterns differentiating early from late disease and correlating with histopathologic changes in the paw. Of the 385 cDNAs, 185 are known, characterized genes, the majority of which are not described as playing a role in arthritis. However, several of these genes are involved in pathological processes relating to arthritis, including apoptosis, inflammation, and cellular proliferation. One interesting gene, follistatin-like gene, is highly expressed along the margin of contact between inflammatory synovial pannus and eroding bone, suggesting a role in joint destruction. These results demonstrate that global gene expression profiles distinguish early and late CIA and reveal several genes novel to arthritis the further characterization of which will advance our understanding of arthritis.     

Other genomic disorders and congenital heart disease

Congenital heart disease (CHD) is the common birth defect worldwide. Despite its recognized burden on public health, the etiology in the vast majority of individuals remains unknown. Chromosomal abnormality plays an important role, frequently observed as large cytogenetically visible rearrangement or small submicroscopic structural variation in the genome. Several genomic disorders are now recognized that are increasingly responsible for CHD with variable penetrance. Single gene disorders, epigenetic alterations, and environmental etiologies are also significant contributors. Our understanding of the genetic basis of CHD has increased exponentially with the escalating use of next generation sequencing to identify ever so small submicroscopic genomic imbalances at the level of coding exons in CHD. This review focuses on genomic disorders other than 22q11.2 deletion, that are major players in the etiology of human cardiac malformations.     

检测HSV等5种病原体抗体的微阵列技术

目的 建立抗原微阵列技术检测多种病原体抗体。方法 将病原体的基因工程抗原，以电脑操纵的机械手将其点在赖氨酸修饰的玻片上．制备抗原微阵列，与血清反应后随之与Cy3标记的二抗反应，用激光共聚焦扫描仪扫描玻片，检测血清中相应病原体的IgG，并进行了灵敏度和重复性的检测。结果 5种抗原的最低检测限度为HSV1-gG 1．56μg／ml，HSV2-gG 3．125μg／ml，CMV-p150 1．56μg／ml，RV-E1E2 3．125μg/ml，MT-EAM 31．26μg／ml；抗原微阵列与ELISA检测的结果相比有较高的符合率；检测IgG和IgM的灵敏度分别为50pg、10pg；不同批次2张玻片间总体变异系数为IgG 6．52，IgM 18．89。结论 抗原微阵列可用于平行检测血液中病原体特异性抗体。