Genetic and epigenetic alterations of the EGFR and mutually independent association with BRCA1, MGMT,and RASSF1A methylations in Vietnamese lung adenocarcinomas

Genetic and epigenetic alterations importantly contribute to the pathogenesis of lung cancer. In the study, we measured the frequency and distribution of molecular abnormalities of EGFR as well as the aberrant promoter methylations of BRCA1, MGMT, MLH1, and RASSF1A in Vietnamese lung adenocarcinomas. We investigated the association between genetic and epigenetic alteration, and between each abnormality with clinicopathologic parameters. Somatic EGFR mutation that was found in 49/139 (35.3%) lung adenocarcinomas showed a significant association with young age, female gender, and non-smokers. EGFR overexpression was identified in 82 tumors (59.0%) and statistical relationships with EGFR or BRCA1 methylation but not EGFR mutation. In addition, EGFR, BRCA1, MGMT, MLH1, and RASSF1A methylations were found in 33 (23.7%), 41 (29.5%), 46 (33.1%), 28 (20.1%), and 41 (29.5%) cases of a total of 139 lung adenocarcinomas, respectively. The RASSF1A methylation was found to be linked to the smoking habit. Methylations in MGMT and RASSF1A were also found to correlate with metastasis status. Furthermore, the distribution of EGFR mutation and that of BRCA1, MGMT or RASSF1A methylation were significantly exclusive in lung adenocarcinomas. The main finding of our study demonstrate that epigenetic abnormalities might play a critical role for the lung tumorigenesis in patients with smoking history and metastasis, and partly affect the predictive value of EGFR mutations through blocking expression due to promoter EGFR hypermethylation. Mutually exclusive distribution of genetic and epigenetic alterations reflects differently biological characteristics in the etiology of lung adenocarcinomas.     

DNA methylation of the ELOVL2, FHL2, KLF14, C1orf132/MIR29B2C,and TRIM59 genes for age prediction from blood,saliva, and buccal swab samples

Many studies have reported age-associated DNA methylation changes and age-predictive models in various tissues and body fluids. Although age-associated DNA methylation changes can be tissue-specific, a multi-tissue age predictor that is applicable to various tissues and body fluids with considerable prediction accuracy might be valuable. In this study, DNA methylation at 5 CpG sites from the ELOVL2, FHL2, KLF14, C1orf132/MIR29B2C, and TRIM59 genes were investigated in 448 samples from blood, saliva, and buccal swabs. A multiplex methylation SNaPshot assay was developed to measure DNA methylation simultaneously at the 5 CpG sites. Among the 5 CpG sites, 3 CpG sites in the ELOVL2, KLF14 and TRIM59 genes demonstrated strong correlation between DNA methylation and age in all 3 sample types. Age prediction models built separately for each sample type using the DNA methylation values at the 5 CpG sites showed high prediction accuracy with a Mean Absolute Deviation from the chronological age (MAD) of 3.478 years in blood, 3.552 years in saliva and 4.293 years in buccal swab samples. A tissue-combined model constructed with 300 training samples including 100 samples from each blood, saliva and buccal swab samples demonstrated a very strong correlation between predicted and chronological ages (r = 0.937) and a high prediction accuracy with a MAD of 3.844 years in the 148 independent test set samples of 50 blood, 50 saliva and 48 buccal swab samples. Although more validation might be needed, the tissue-combined model’s prediction accuracies in each sample type were very much similar to those obtained from each tissue-specific model. The multiplex methylation SNaPshot assay and the age prediction models in our study would be useful in forensic analysis, which frequently involves DNA from blood, saliva, and buccal swab samples.     

凝血栓蛋白1基因异常甲基化与大肠腺癌关联

目的 探讨凝血栓蛋白l（THBS1）基因启动子CpG岛异常甲基化与大肠腺癌及其临床病理特征的关联。方法 THBS1基因甲基化状态用甲基化特异性PCR检测。结果 大肠腺癌、癌旁组织中，THBSI基因启动子cpG岛甲基化率的差异有显著性（X^2=5．93，P=0．025）；老年患者肿瘤组织中THBS1基因甲基化率明显商于非老年患者（X^2=5.68，P=0．017），直径≥3cm的肿瘤组织中THBSl基因甲基化率显著高于直径〈3cm的肿瘤（X^2=4．16，P=0．041），C期和D期肿瘤组织中THBS1基因甲基化率显著高于A期或B期肿瘤（X^2=8．04，u=2，P=0．018）。结论 THBS1基因甲基化与大肠腺癌的发生有关，肿瘤以老年、晚期和直径较大的肿瘤多见。     

人原发性肝癌中p16基因表达及CpG岛甲基化状态的研究

目的　进一步探讨人原发性肝癌中 p16基因 m RNA转录水平变化与其基因启动子区 Cp G岛甲基化的关系 ,及其在肝癌发生中的意义。方法　采用狭缝印迹杂交检测 2 0例人原发性肝癌及相应的癌旁、远癌组织及 2例正常人肝组织中 p16基因 m RNA表达水平 ,以甲基化特异性 PCR分析各组织中 p16基因启动子区 Cp G岛的甲基化状况 ,并进行统计分析。结果　 2 0例人原发性肝癌中 14例 (70 % ) p16 m RNA水平比远癌组织显著降低 ;13例 (6 5 % )显示 p16基因启动子区 Cp G岛甲基化 ,其中 84 .6 % (11例 )伴 p16 m RNA转录水平降低。结论　人原发性肝癌中存在高频率的 p16基因表达失活 ,其主要机制可能是启动子区 Cp G岛甲基化抑制了基因的转录 ,在人原发性肝癌的发生发展中有重要作用。其临床诊断和治疗意义有待进一步深入研究。     

胰腺癌中p16基因甲基化改变及其蛋白表达分析

目的:探讨胰腺癌与癌旁组织中p16基因启动子区异常甲基化的改变及其蛋白表达的特点,以及其与胰腺癌发生发展的关系。方法:分别采用免疫组化SP法及甲基化特异PCR(MSP)检测46例人胰腺癌和癌旁组织中p16基因表达及其甲基化的水平,并结合临床资料进行分析。结果:胰腺癌中p16蛋白表达率为41.3%(19/46),而癌旁组织表达率为95.7%(44/46),两者有差异显著性(P<0.01)。p16蛋白阳性的19例胰腺癌标本中均未检出基因甲基化;p16蛋白缺失的27例标本中有18例检出基因甲基化,甲基化率为39.1%。p16基因甲基化与蛋白缺失有明显关系(P<0.05)。p16基因表达及其启动子区甲基化的发生率与胰腺癌的大小,患者性别﹑年龄的差异无显著意义(P>0.05),但与组织分化程度﹑淋巴结转移﹑PTNM分期有显著意义(P<0.05)。结论:p16基因启动子的异常甲基化可影响p16蛋白的表达,它们与胰腺癌的发生发展有关;p16甲基化和蛋白表达可能成为胰腺癌诊断及预后的候选标志物之一。     

树舌多糖GF对小鼠HepA瘤基因组DNA甲基化影响的实验研究

目的初步探讨树舌多糖GF对小鼠HepA瘤基因组甲基化的影响.方法提取基因组DNA,采用限制性酶切片段长度多态性分析的方法进行甲基化检测.结果 HpaII酶切结果:树舌多糖组可见3个条带,猪苓对照组可见3个条带, 阴性对照组可见4个条带,正常对照组可见2个条带.MspI酶切结果:树舌多糖组可见6个条带,猪苓对照组可见5个条带,阴性对照组可见5个条带,正常对照组可见6个条带.结论小鼠HepA瘤基因组DNA是低甲基化的,树舌多糖GF有阻碍小鼠HepA瘤基因组DNA低甲基化发生的趋势,可能还具有抗5mC的突变的作用.     

肾母细胞瘤RASSF1A基因启动子区甲基化研究

目的了解肾母细胞瘤RASSF1A基因启动子区甲基化情况。方法手术获取9例肾母细胞瘤及瘤旁残留肾组织,提取DNA后用亚硫酸氢钠处理,巢式PCR扩增RASSF1A基因启动子区DNA片段,测序,检测启动子区甲基化情况。结果发现1例16个CpG岛位点中有10个存在甲基化(10/16),相应瘤旁残留肾组织无甲基化(0/16);在另1例瘤组织中检测到12个CpG岛位点存在甲基化(12/16),但仅有8个CpG岛位点与上例相同,另外4个位点不同。结论肾母细胞瘤中RASSF1A基因启动子区存在甲基化,与瘤旁残留肾组织甲基化情况有差别。     

人肠癌RKO细胞周期依赖性激抑制因子基因启动子区甲基化状态的研究

目的 探讨人结肠癌RKO细胞周期依赖性激酶抑制因子(CKIs)家族启动子区CpG岛甲基化状态及其甲基化可逆性特征.方法 应用特异性DNA甲基转移酶(DNMTs)抑制剂5-Aza-2]-deoxycytidine(5-Aza-CdR)处理肠癌细胞,甲基特异性聚合酶链反应(Methylation-Specific PCR,MSP)、T-A克隆及DNA测序法分析RKO细胞CKIs家族抑癌基因p15ink4b、p16ink4a/CDKN2、p21/cip、p27/kip启动子CpG岛甲基化状态.结果 未经5-Aza-CdR作用的肠癌RKO细胞,其p15ink4b、p16ink4a/CDKN2基因组DNA胞嘧啶(C)保持不变,这提示在其单链DNA中胞嘧啶呈甲基化状态;而经5-Aza-CdR作用的肠癌RKO细胞,其p15ink4b、p16ink4a/CDKN2、p21/cip和p27/kip基因组DNA胞嘧啶均已变为胸腺嘧啶,表明在DNA单链中胞嘧啶已呈去甲基化状态.结论 肠癌RKO细胞周期INK4家族(p15ink4b和p16ink4a/CDKN2)基因的启动子区处于异常的高甲基化状态,而KIP/CIP家族(p21/cip和p27/kip)基因未处于高甲基化状态;5-Aza-CdR能较好地逆转肿瘤细胞INK4家族基因DNA高甲基化状态.     

p16基因启动子甲基化与结直肠癌发生发展的关系

目的　探讨p16基因启动子甲基化在结直肠癌发生、发展过程中的作用及其临床意义。方法　采用RT PCR、免疫组化方法检测p16基因表达 ,用甲基化特异性PCR(MSP)方法检测p16基因启动子甲基化。结果　 5 8例结直肠癌中 ,癌旁肠粘膜、原发灶、肝转移灶中p16表达阳性率分别为97% (5 6 /5 8)、31% (18/5 8)、7% (2 /2 8) ,原发灶、肝转移灶中p16表达明显降低 (P <0 0 1)。癌旁肠粘膜组织中未发现p16基因启动子甲基化 ,而癌原发灶、肝转移灶中p16甲基化阳性率分别为 5 0 %(2 9/5 8)、75 % (2 1/2 8) ,3种组织p16基因启动子甲基化率的差别有显著性意义 (P <0 0 1)。在 2 8例出现肝转移者外周静脉血、胆汁中可检测到p16甲基化启动子序列者分别为 2 3例 (82 % )、2 0例 (71% )。结论　p16基因启动子甲基化导致p16抑癌基因失活与结直肠癌的发生、转移有密切关系。