基于PubMed开发的数据分析工具在图书馆工作中的应用

随着信息化的不断发展,图书馆可以使用的科研分析工具将越来越多,图书馆将从过去的以文献检索、全文获取为中心的服务,发展到关注学术研究过程并为其提供针对性、知识化、个性化的深层次服务。     

Bibliometric analysis of COVID-19 related publications in Indian orthopaedic journals

BackgroundThe COVID-19 pandemic has resulted in an infodemic about the novel coronavirus SARS-CoV-2 outbreak to build knowledge and develop mitigation strategies. In addition, scientific journals across the world have studied the impact of COVID-19 on trauma and orthopaedics.MethodsA cross-sectional, bibliometric analysis of the literature was undertaken on COVID-19 related articles from three Pubmed and Scopus indexed orthopaedic journals from India, namely, Indian Journal of Orthopaedics(IJO),Journal of Clinical Orthopaedics and Trauma(JCOT), and Journal of Orthopaedics (JOO), in May 2021. All the article types and study designs were included for this review. The authors, institutions, countries, keywords, and co-authorship mapping were studied.ResultsA total of 112 COVID-19 related documents were retrieved. Period of these publications was from 2^nd April 2020 to 31^st May 2021. Vaishya R. (n = 16) was the most cited author, and Indraprastha Apollo Hospitals (n = 16) was the most cited research Institution. India led the list of countries in academic publication output. On keyword mapping, telemedicine was the most prominent Medical Subject Headings (MeSH) search word.ConclusionThe Indian orthopedic journals have addressed the impact of COVID-19 on orthopaedic practice in India and aborad whilst continuing to publish knowledge about basic science and clinical orthopaedic research studies. The JCOT has outperformed and become the most leading orthopaedic journal from India during the pandemic. COVID -19 articles have been fast tracked, open accessed and attracted more citations in reduced duration of time compared to non-COVID-19 papers.     

Clinical Trial Information Mediator

For research in biomedical sciences, cross-domain searches through several different databases are an increasingly necessary task that often becomes a time consuming and labour-intense process. This is especially the case when different domain databases have to be combined, for example combined searches in clinical trials registries, publication databases and research databases. The Clinical Trial Information Mediator (CTIM) addresses this problem and offers a novel way for the combined search in ClinicalTrials.gov, PubMed and BioSamples.CTIM was developed based on a requirements analysis and implemented using open source technology. A search engine with a graphical user interface was developed in order to search linked data in the three databases ClinicalTrials.gov, PubMed and BioSamples; thereby enabling CTIM to bridge the gap between different knowledge domains of clinical trials, publications of research results and biosamples/genetic information. CTIM was applied in three use cases demonstrating that information retrieval could be considerably improved in sense for complex queries. These use cases show that more relevant results were obtained and more associated publications and biosamples could be retrieved in comparison to a separate single search.Main advantages of CTIM are identifying related information between clinical trials and publications employing a clinical trial centred kind of search, simplified access to its databases and thus reduced search time. In addition it can be used by researchers without prior training because of the intuitive usage.     

Is autoimmunology a discipline of its own? A big data-based bibliometric and scientometric analyses

Autoimmunology is a super-specialty of immunology specifically dealing with autoimmune disorders. To assess the extant literature concerning autoimmune disorders, bibliometric and scientometric analyses (namely, research topics/keywords co-occurrence, journal co-citation, citations, and scientific output trends – both crude and normalized, authors network, leading authors, countries, and organizations analysis) were carried out using open-source software, namely, VOSviewer and SciCurve. A corpus of 169,519 articles containing the keyword “autoimmunity” was utilized, selecting PubMed/MEDLINE as bibliographic thesaurus. Journals specifically devoted to autoimmune disorders were six and covered approximately 4.15% of the entire scientific production. Compared with all the corpus (from 1946 on), these specialized journals have been established relatively few decades ago. Top countries were the United States, Japan, Germany, United Kingdom, Italy, China, France, Canada, Australia, and Israel. Trending topics are represented by the role of microRNAs (miRNAs) in the ethiopathogenesis of autoimmune disorders, contributions of genetics and of epigenetic modifications, role of vitamins, management during pregnancy and the impact of gender. New subsets of immune cells have been extensively investigated, with a focus on interleukin production and release and on Th17 cells. Autoimmunology is emerging as a new discipline within immunology, with its own bibliometric properties, an identified scientific community and specifically devoted journals.     

The recent 10-year landscape of aortic dissection research: a bibliometric analysis

BackgroundWe aimed to comprehensively analyze all the literature related to aortic dissection (AD) in the past decade using Web Scrapping technology from PubMed, revealing the research dynamics in this field.MethodsData were retrieved and downloaded from PubMed with search strategy as “(aortic dissection [Title/Abstract]) AND (2010[EDAT]: 2020[EDAT])”. Information on the PMID, journal name, title, number of citations, publication year, authors, affiliations, abstract, study type, and keywords of the research was recorded.ResultsA total of 7,470 publications were identified. Most of the articles were published in J Thorac Cardiovasc Surg; Japan was the country with the largest publications number; the USA was far ahead of other countries regarding the highly cited studies; Yale University and Baylor College of Medicine took the first place for publishing most of the highly cited articles; the most frequently cited article is the 2014 ESC Guidelines on the diagnosis and treatment of aortic diseases; most of the clinical trials were published on J Vasc Surg; John A. Elefteriades ranked first by cumulative publication numbers; Christoph A. Nienaber took the lead by both cumulative citations and impact factors; Dianna M. Milewicz was the only female researcher on all the three ranking lists; the most common keywords in aortic dissection were Treatment Outcome and Retrospective Studies.ConclusionsThis study provides interesting insights into the AD scientific landscape in recent 10 years and generates some objective evidence for comprehensive understanding and evaluation of this field. This investigation may ultimately inform managers, researchers and policymakers.     

PubMed耳鼻咽喉科杂志文献搜索引擎的建立及其在编辑工作中的应用

为方便科技期刊编辑快捷、准确地查阅文献,利用Medline数据库,从PubMed中检索出91种耳鼻咽喉科学的杂志题录.在WORD中制作每种杂志相应的超级链接从而组成一个有关耳鼻咽喉科学杂志文献的搜索引擎,以满足科技期刊编辑对信息资源的需求.     

西太平洋地区医学索引元数据方案的设计与应用

概述WHO西太平洋地区医学索引(WPRIM)的项目背景和目标,在分析PubMed,KoreaMed,J-STAGE和CiNii检索系统元数据标准的基础上,结合WPRIM自身的资源特点和组织方式,设计出WPRIM元数据方案,并将其应用于WPRIM检索服务平台的数据提交系统中。     

2008-2009年PubMed收录针灸治疗疼痛的文献计量分析

[目的]了解国际权威检索工具PubMed数据库收录2008—2009年国际针灸治疗疼痛的研究和发展情况。【方法】利用主题词检索,通过互连网(Internet)查询到PubMed数据库2008—2009年收录有关针灸治疗疼痛研究的文献421篇,排除与研究无关的文献44篇,纳入统计的文献共377篇,在此基础上,按国别分布、期刊出处、研究内容、研究方法、腧穴研究等进行统计分析。【结果】论文来源主要集中在中、美、德、英等国家,文献主要发表在《中国针灸》、《针刺研究》、《JAlternComplementMed》等期刊上,涉及病种广泛,主要集中在腰痛、痛经、头痛、术后痛、膝骨关节痛、肩关节痛等疼痛的研究。【结论】针灸在治疗疼痛方面有很好的疗效,关于针刺镇痛效应的机制,世界各国做了较广泛的研究,针灸作为一种有效的治疗疼痛的方法,愈来愈多地得到国际医学界的关注。     

Trends in pemphigus research over 15 years

Background Although pemphigus is a rare autoimmune blistering disease, it attracts the attention of physicians of many disciplines. Objective This study aims to assess the number of articles on pemphigus that have been published over 15 years in dermatology vs. non‐dermatology medical journals, and to evaluate the quality of available evidence. Methods PubMed was searched for articles on pemphigus published between 1 January 1993 to 31 December 2007 using the search word pemphigus. Articles were characterized by publication type and journal type per year. Regression analysis was used to determine the effect of year of publication on number of publications of each type. Results The search yielded 2032 publications on pemphigus during the evaluation period. Sixty‐one per cent were published in dermatology journals. Overall, the number of publications increased linearly with time. Most of this increase was accounted for by publications in non‐dermatology journals. There was an increase in clinical trials over the course of the study period. The number of certain publications with lower quality of evidence, mainly case reports and letters to the editor, increased significantly in the last few years. There was no increase in publications with high quality of evidence. Conclusions The increase on data from non‐dermatology disciplines is a welcome contribution. Nevertheless, high‐quality evidence on pemphigus is still lacking. We trust that the current trend towards evidence‐based dermatology will impact future research on this severe disease.