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Genetic Characterization of the M RNA Segment of Crimean-Congo Hemorrhagic Fever Virus Strains Isolated in Russia and Tajikistan
Authors:Seregin  Sergei V.  Samokhvalov  Evgeny I.  Petrova  Irina D.  Vyshemirskii  Oleg I.  Samokhvalova  Ekaterina G.  Lvov  Dmitry K.  Gutorov  Valery V.  Tyunnikov  Georgy I.  Shchelkunov  Sergei N.  Netesov  Sergei V.  Petrov  Vladimir S.
Affiliation:State Research Center of Virology and Biotechnology "VECTOR", Koltsovo, Novosibirsk Region, 630559, Russia.
Abstract:The data on the structure of the M genome segment of CCHF virus strains from Russia and Central Asia (Tajikistan) are presented. Data obtained have been compared with other available published sequences of the middle segment of strains from China, Nigeria, and Pakistan. It has been found that all the known strains can be divided into four genetic groups, based on the nucleotide sequence of the M genome segment and an amino acid sequence of the glycoprotein precursor it encodes, whereas VLG/TI29414 and STV/HU29223 strains from Russia form a separate group. The CCHF virus strain from Tajikistan, TADJ/HU8966, was genetically related to strains 7803 and 75024 from China, and together with these and the Nigerian IbAr 10200 strain, it forms another group.
Keywords:Crimean-Congo hemorrhagic fever (CCHF) virus  genetic diversity  m segment  sequence
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