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CC趋化因子配体20在肝细胞癌组织中的表达及其在肝细胞肝癌预后评估中作用的生物信息学分析
引用本文:胡连涛,邓文俊,鹿士振,孙跞,李学斌,黎楚豪,王欣然,张春斌,李玥,王伟群.CC趋化因子配体20在肝细胞癌组织中的表达及其在肝细胞肝癌预后评估中作用的生物信息学分析[J].吉林大学学报(医学版),2022,48(4):1010-1017.
作者姓名:胡连涛  邓文俊  鹿士振  孙跞  李学斌  黎楚豪  王欣然  张春斌  李玥  王伟群
作者单位:佳木斯大学基础医学院生理学教研室,黑龙江 佳木斯 154007
黑龙江省微生物-免疫调解网络与相关疾病重点实验室,黑龙江 佳木斯 154007
佳木斯大学第一临床医学院免疫科,黑龙江 佳木斯 154007
漳州卫生职业学院医学技术教研室/翻译医学检测与 应用技术协作创新中心,福建 漳州 363000
基金项目:黑龙江省教育厅基本科研业务费人才培养项目(2019-KYYWF-1338)
摘    要:目的研究CC趋化因子配体20(CCL20)在肝细胞肝癌(LIHC)组织中的表达,并探讨其对LIHC患者预后的影响,阐述CCL20影响LIHC恶性行为的机制。

关 键 词:CC趋化因子配体20  肝细胞肝癌  生物信息学  预后  临床诊断  
收稿时间:2021-10-16

Bioinformatics analysis on CC chemokine ligand 20 expression in hepatocellular carcinoma tissue and its effect on prognostic assessment of liver hepatocellular carcinoma
Liantao HU,Wenjun DENG,Shizhen LU,Luo SUN,Xuebing LI,Chuhao LI,Xinran WANG,chunbing ZHANG,Yue LI,Weiqun WANG.Bioinformatics analysis on CC chemokine ligand 20 expression in hepatocellular carcinoma tissue and its effect on prognostic assessment of liver hepatocellular carcinoma[J].Journal of Jilin University: Med Ed,2022,48(4):1010-1017.
Authors:Liantao HU  Wenjun DENG  Shizhen LU  Luo SUN  Xuebing LI  Chuhao LI  Xinran WANG  chunbing ZHANG  Yue LI  Weiqun WANG
Abstract:ObjectiveTo investigate the expression of CC chemokine ligand 20 (CCL20) in liver hepatocellular carcinoma(LIHC) tissue and explore its influence in the prognosis in the patients with LIHC, and to elucidate the mechanism of CCL20 affecting the malignant behavior of LIHC. Methods The mRNA expression levels and clinical data in cancer tissue and para-cancer tissue of the LIHC patients were obtained from The Cancer Genome Atlas (TCGA) and UCSC Xena platforms using Rstudio (4.03) software, and the differences in the CCL20 mRNA expression between the two kinds of tissues were compared,and these results were validated using GEPIA combined with GTEx data. Kaplan-Meier survival analysis and Cox regression analysis methods were used to analyze the relationship between the CCL20 mRNA expression level and the prognosis of LIHC patients. The correlation between the CCL20 expression level and alpha fetoprotein (AFP) level in the LIHC patients was analyzed by Pearson correlation analysis, and the area under receiver operating characteristic (ROC) curve(AUC), Nomogram and correction curve were used to analyze the correlations between the CCL20 mRNA expression level and the clinical diagnosis and survival prediction in the patients with LIHC. GSEA enrichment analysis of the CCL20 mRNA correlation between the expression level expression in cancer tissue of the LIHC patients was performed using the TCGA database, and the correlation between the expression level of CCL20 mRNA and DNA copy-number alterations(CNA) and DNA methylation level were analyzed.
Keywords:CC chemokine ligand 20  Liver hepatocellular carcinoma  Bioinformatics analysis  Prognosis  Clinical diagnosis  
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