Unraveling the biological mechanisms in Alzheimer's disease--lessons from genomics |
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Authors: | Borovecki Fran Klepac Natasa Muck-Seler Dorotea Hajnsek Sanja Mubrin Zdenko Pivac Nela |
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Affiliation: | a Department for Functional Genomics, Center for Translational and Clinical Research, University of Zagreb School of Medicine, University Hospital Center Zagreb, Croatiab Department of Neurology, University Hospital Center Zagreb, Croatiac Division of Molecular Medicine, Rudjer Boskovic Institute, Croatia |
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Abstract: | Alzheimer's disease (AD) is the most common form of dementia and the most common neurodegenerative disease, with a complex genetic background. Genome-wide association studies (GWAS) have yielded important new insights into genetic mechanisms of AD pathology. Current results unequivocally confirm apolipoprotein E (APOE) as a major genetic risk factor for development of late onset AD. Additional associations of more than twenty genes have also been identified and replicated in subsequent genetic studies. Despite the exciting new GWAS data which have emerged in the last few years, it has become clear that common variants within the genome cannot fully explain the underlying genetic risk for AD. Novel approaches such as genome-wide analysis of copy number variations (CNV) or low-frequency rare functional gene variants may provide additional insight into genetic basis of AD. In this review we summarize the findings of eighteen GWAS studies in AD performed to date, with an emphasis on potential future developments in the quest for genetic risk factors of AD. |
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Keywords: | Aβ, β-amyloid ACAN, aggrecan ACE, angiotensin I converting enzyme AD, Alzheimer's disease APOE, apolipoprotein E APP, amyloid precursor protein ARSB, Arylsulfatase B ATXN1, ataxin 1 BCR, breakpoint cluster region BIN1, bridging integrator 1 BLOC1S3, biogenesis of lysosomal organelles complex-1, subunit 3 CAND1, cullin-associated and neddylation-dissociated 1 CH25H, cholesterol 25-hydroxylase CHRNA7, cholinergic receptor, nicotinic, alpha 7 CHRNB2, cholinergic receptor, nicotinic, beta 2 CHARGE, Cohort for Heart and Aging Research in Genomics Epidemiology CLU, clusterin CNV, copy number variations CNTN5, contactin 5 CR1, complement component (3b/4b) receptor 1 CST3, cystatin C CTSS, cathepsin S DISC1, disrupted in schizophrenia 1 ECT, entorhinal cortex thickness EBF3, early B-cell factor 3 EFNA5, ephrin-A5 FAM113B, family with sequence similarity 113, member B FAM63A, family with sequence similarity 63, member A FDR, false discovery rate GAB2, GRB2-associated binding protein 2 GALP, galanine and galanine-like peptides GRB2, growth factor receptor bound protein GWAS, genome-wide association studies KEGG, Kyoto Encyclopedia of Genes and Genomes LD, linkage disequilibrium LMNA, lamin A/C LRAT, lecithin retinol acyltransferase MAGI2, membrane associated guanylate kinase, WW and PDZ domain containing 2 MAPT, microtubule-associated protein tau MARK4, MAP/microtubule affinity-regulating kinase 4 MRI, magnetic resonance imaging MYH13, myosin, heavy chain 13 MTHFD1L, methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like PCK1, phosphoenolpyruvate carboxykinase 1 PCDH11X, protocadherin 11 X-linked PGBD1, piggyBac transposable element derived 1 PICALM, phosphatidylinositol binding clathrin assembly protein PRNP, prion protein PRUNE2, prune homolog 2 PSEN, presenilin QT, quantitative trait RNF220, ring finger protein 220 SNP, single nucleotide polymorphism SORL1, sortilin-related receptor TF, transferrin THF, tetrahydrofolate TNK1, tyrosine kinase, non receptor 1 TOMM40, translocase of outer mitochondrial membrane 40 homolog TPT, temporal pole cortex thickness TRAK1, trafficking protein, kinesin binding 1 TRPC4AP, transient receptor potential cation channel, subfamily C, member 4 associated protein UBD, ubiquitin D UTP20, UTP20, small subunit (SSU) processome component, homolog WML, white matter lesion volume ZNF224, zinc finger protein 224 |
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