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Unraveling the biological mechanisms in Alzheimer's disease--lessons from genomics
Authors:Borovecki Fran  Klepac Natasa  Muck-Seler Dorotea  Hajnsek Sanja  Mubrin Zdenko  Pivac Nela
Affiliation:
  • a Department for Functional Genomics, Center for Translational and Clinical Research, University of Zagreb School of Medicine, University Hospital Center Zagreb, Croatia
  • b Department of Neurology, University Hospital Center Zagreb, Croatia
  • c Division of Molecular Medicine, Rudjer Boskovic Institute, Croatia
  • Abstract:Alzheimer's disease (AD) is the most common form of dementia and the most common neurodegenerative disease, with a complex genetic background. Genome-wide association studies (GWAS) have yielded important new insights into genetic mechanisms of AD pathology. Current results unequivocally confirm apolipoprotein E (APOE) as a major genetic risk factor for development of late onset AD. Additional associations of more than twenty genes have also been identified and replicated in subsequent genetic studies. Despite the exciting new GWAS data which have emerged in the last few years, it has become clear that common variants within the genome cannot fully explain the underlying genetic risk for AD. Novel approaches such as genome-wide analysis of copy number variations (CNV) or low-frequency rare functional gene variants may provide additional insight into genetic basis of AD. In this review we summarize the findings of eighteen GWAS studies in AD performed to date, with an emphasis on potential future developments in the quest for genetic risk factors of AD.
    Keywords:Aβ, β-amyloid   ACAN, aggrecan   ACE, angiotensin I converting enzyme   AD, Alzheimer's disease   APOE, apolipoprotein E   APP, amyloid precursor protein   ARSB, Arylsulfatase B   ATXN1, ataxin 1   BCR, breakpoint cluster region   BIN1, bridging integrator 1   BLOC1S3, biogenesis of lysosomal organelles complex-1, subunit 3   CAND1, cullin-associated and neddylation-dissociated 1   CH25H, cholesterol 25-hydroxylase   CHRNA7, cholinergic receptor, nicotinic, alpha 7   CHRNB2, cholinergic receptor, nicotinic, beta 2   CHARGE, Cohort for Heart and Aging Research in Genomics Epidemiology   CLU, clusterin   CNV, copy number variations   CNTN5, contactin 5   CR1, complement component (3b/4b) receptor 1   CST3, cystatin C   CTSS, cathepsin S   DISC1, disrupted in schizophrenia 1   ECT, entorhinal cortex thickness   EBF3, early B-cell factor 3   EFNA5, ephrin-A5   FAM113B, family with sequence similarity 113, member B   FAM63A, family with sequence similarity 63, member A   FDR, false discovery rate   GAB2, GRB2-associated binding protein 2   GALP, galanine and galanine-like peptides   GRB2, growth factor receptor bound protein   GWAS, genome-wide association studies   KEGG, Kyoto Encyclopedia of Genes and Genomes   LD, linkage disequilibrium   LMNA, lamin A/C   LRAT, lecithin retinol acyltransferase   MAGI2, membrane associated guanylate kinase, WW and PDZ domain containing 2   MAPT, microtubule-associated protein tau   MARK4, MAP/microtubule affinity-regulating kinase 4   MRI, magnetic resonance imaging   MYH13, myosin, heavy chain 13   MTHFD1L, methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like   PCK1, phosphoenolpyruvate carboxykinase 1   PCDH11X, protocadherin 11 X-linked   PGBD1, piggyBac transposable element derived 1   PICALM, phosphatidylinositol binding clathrin assembly protein   PRNP, prion protein   PRUNE2, prune homolog 2   PSEN, presenilin   QT, quantitative trait   RNF220, ring finger protein 220   SNP, single nucleotide polymorphism   SORL1, sortilin-related receptor   TF, transferrin   THF, tetrahydrofolate   TNK1, tyrosine kinase, non receptor 1   TOMM40, translocase of outer mitochondrial membrane 40 homolog   TPT, temporal pole cortex thickness   TRAK1, trafficking protein, kinesin binding 1   TRPC4AP, transient receptor potential cation channel, subfamily C, member 4 associated protein   UBD, ubiquitin D   UTP20, UTP20, small subunit (SSU) processome component, homolog   WML, white matter lesion volume   ZNF224, zinc finger protein 224
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