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Origins of barriers and barrierless folding in BBL
Authors:Cho Samuel S  Weinkam Patrick  Wolynes Peter G
Affiliation:Center for Theoretical Biological Physics and Departments of Chemistry and Biochemistry and Physics, University of California at San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA.
Abstract:In contrast to classical chemical phenomenology, theory suggests that proteins may undergo downhill folding without an activation barrier under certain thermodynamic conditions. Recently, the BBL protein was proposed to fold by such a downhill scenario, but discrepancies between experimental results found in different groups argue against this. After briefly reviewing the major experimental studies of the BBL folding mechanism, we show that simulations of both coarse-grained and atomistic models can reconcile the seemingly conflicting observations.
Keywords:energy landscape theory   protein folding   downhill folding   electrostatics   shielding
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