| 基于Bioconductor的微阵列数据处理平台 |
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| 引用本文： | 王胜军,郭云波,杨俊,杨绍洲,邓亲恺. 基于Bioconductor的微阵列数据处理平台[J]. 北京生物医学工程, 2010, 29(5): 531-533. DOI: 10.3969/j.issn.1002-3208.2010.05.21. |
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| 作者姓名： | 王胜军 郭云波 杨俊 杨绍洲 邓亲恺 |
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| 作者单位： | 南方医科大学基础医学院,广州,510515;南方医院,广州,510515;南方医科大学基础医学院,广州,510515;解放军458医院,广州,510602;南方医院,广州,510515 |
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| 摘 要： | 随着基因微阵列的广泛应用,其数据处理越来越引起广泛重视。为了使数据处理高效率,规范化且易于实现,我们建立了一种基于Bioconductor的基因微阵列数据处理平台。该基因微阵列数据处理平台建立在Power Cluster 8000IN高性能计算系统上,用户可以通过网页访问实现数据处理,高效地实现Affymetrix微阵列的数据上传、预处理、差异表达分析、多重检验和注释。本文还分析了该平台的功能扩展方法。
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| 关 键 词： | 微阵列 数据处理平台 |
A Micro-Array Data Processing Platform Based on Bioconductor |
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| WANG Shengjun,GUO Yunbo,YANG Jun,YANG Shaozhou,DENG Qinkai. A Micro-Array Data Processing Platform Based on Bioconductor[J]. Beijing Biomedical Engineering, 2010, 29(5): 531-533. DOI: 10.3969/j.issn.1002-3208.2010.05.21. |
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| Authors: | WANG Shengjun GUO Yunbo YANG Jun YANG Shaozhou DENG Qinkai |
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| Affiliation: | 1 College of Basic Medical Science, Southern Medical University, Guangzhou 510515 ; 2 No. 458 Hospital ofPLA, Guangzhou 510602; 3 Nanfang Hospital, Guangzhou 510515) |
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| Abstract: | With the wide applications of gene micro-array, its data processing attracts more and more attentions. In order to process the data effectively, easy and in standardization we established a data processing platform of gene micro-array based on Bioconductor. This platform was set up on a computer of PowerClusterSOOOIN with high performance. Using the micro-array data processing platform, customers, via web, can process the data and effectively complete the data uploading, preprocessing, differential gene expression analyzing, multiple testing and annotating. The extending functions for the data process platform were also illuminated finally. |
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| Keywords: | micro-array data processing platform |
| 本文献已被 CNKI 维普 万方数据 等数据库收录！ |
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