The permeation and separation characteristics during evapomeation of an ethanol/water azeotrope (96.5 wt.‐% ethanol) through quaternized chitosan (q‐Chito) membranes and cross‐linked q‐Chito membranes, which were cross‐linked with diethylene glycol diglycidyl ether (DEDGE), were studied. Both the q‐Chito and the cross‐linked q‐Chito membranes showed high water‐permselectivity for an ethanol/water azeotrope. The permeation rates for both membranes decreased and the water‐permselectivities increased, with an increasing degree of quaternization of the chitosan and cross‐linker concentration. The mechanism of separation for the ethanol/water azeotrope through the q‐Chito and cross‐linked q‐Chito membranes was analyzed by the solution‐diffusion model. Increasing permeation temperature increased the permeation rate and decreased the water‐permselectivity for both membranes. However, the permeation rates of a cross‐linked q‐Chito membrane at 60–80°C were almost the same as those of the q‐Chito membrane, and the separation factors for water‐permselectivity (α =4 100–4 200) in the former were greater by two orders of magnitude as compared to the latter (α = 47–58). The above results were discussed from the viewpoints of the physical and chemical structure of the q‐Chito and cross‐linked q‐Chito membranes.