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HLA-DR位点的基因芯片分型与临床应用
引用本文:李成涛,杨颖,李莉,康敏华,曹慧敏,李瑶.HLA-DR位点的基因芯片分型与临床应用[J].中国免疫学杂志,2002,18(11):776-782.
作者姓名:李成涛  杨颖  李莉  康敏华  曹慧敏  李瑶
作者单位:1. 上海博星基因芯片有限公司芯片研究所,上海,200092
2. 上海市血液中心,上海,200051
3. 司法部司法鉴定科学技术研究所,上海,200063
基金项目:国家十五科技攻关资助项目 (2 0 0 1BA80 1B0 3 )
摘    要:目的:建立一种新型的HLA-DR位点的基因分型方法,为HLA-DR的基因分型提供一个较新的思路。方法:利用基因芯片技术HLA不同基因亚型的独特序列设计探讨,制成分型芯片;待检测样品经PCR反应标记上荧光之后,与芯片进行杂交,根据杂交产生的荧光信号值分析确定样品DR位点的基因亚型,将这一方法应用于70份标准DNA和200份医院移植供受者的HLA-DR基因分型并将部分样品进行基因测序。结果:检测结果表明HLA-DR基因分型芯片可准确分辨出DR位点等位基因30大类,耗时3h 。结论:基因芯片用HLA-DR的基因分型,分辨率高,特异性强,重复性好,操作简便,对比常规的PCR-SSP和PCR-SSO方法,HLA-DR基因芯片方法更为直观,并具有集成化优势。可以在一张芯片上同时检测HLAⅠ类的A、B位点,并实现一张芯片多人份,适合于临床应用和骨髓库,脐血库的建立。

关 键 词:HLA-DR位点  基因芯片  临床应用  基因分型  PCR-SSP  PCR-SSO
文章编号:1000-484X(2002)11-0776-04

HLA-DR genotyping and clinical application using Microarray DNA Chip
LI Cheng Tao,YANG Ying,LI Li et al.HLA-DR genotyping and clinical application using Microarray DNA Chip[J].Chinese Journal of Immunology,2002,18(11):776-782.
Authors:LI Cheng Tao  YANG Ying  LI Li
Institution:LI Cheng Tao,YANG Ying,LI Li et al.Shanghai Biostar Genechip Research Institute,Shanghai 200092
Abstract:Objective:To establish a new method performed on an DNA chip for genotyping HLA DR and supply a new view.Methods:According to the particular sequence of HLA DR exon2,HLA DR genotyping Chip was made,then the labeled PCR products hybridized with them,the signals were sanned by sanner and analyzed by Imagene software.70 standard DNA and 200 donor recipients have been genotyped and some of samples have been sequenced.Results:The experimental results showed that the HLA DR genotyping chip made are accurate and sensitive.Thirty alleles of HLA DR were accurately distinguished and its overall time of DNA typing was 3 hours.Conclusion:This proved that the DNA Microarray technique is good for DR genotyping and high resolution,high specificity,well reproducibility.Compared with PCR SSP and PCR SSO methods,the genotyping chip method is more intuitionistic and has the advantage of integration.It can also genotype HLA A,B alleles and many persons in a chip at the same time.It is more suitable for clinical application and establishment of marrow bank and umbilical cord bank.
Keywords:HLA DR  Genotyping  DNA Chip  PCR  SSP  PCR  SSO
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