鼠疫耶尔森菌菌株91001的蛋白质组学初步研究

目的建立鼠疫耶尔森菌的蛋白质组学研究方法，获得鼠疫耶尔森菌的基本蛋白质组数据。方法以对人无致病能力的布氏田鼠疫源地菌株91001为研究对象，按照溶解性的不同分别收集菌体蛋白，以3种不同方法(Shotgun-LC-MS-MS，1D-LC-MS-MS和2D-MS)进行分析，将分析数据与基于91001菌株基因组全序列建立的蛋白质理论数据库进行比对，确定91001菌株本实验培养条件下所表达的蛋白组分。结果Shotgun-LC-MS-MS方法鉴定了971种蛋白，1D-LC-MS-MS鉴定了915种，而2D-MS方法则鉴定了233种蛋白质，三者合计为1193种蛋白质，占基因组预测CDS的28．7％(1193／4143)。结论不同的蛋白质组分析方法鉴定的蛋白质种类和数目都存在差异，为更全面地获得鼠疫耶尔森菌蛋白质组数据，有必要同时采取多种方法进行分析。

Preliminary proteomics analysis of Yersinia pestis strain 91001

Objective To establish reliable proteomics analysis models for Yersinia pestis and obtain the basic proteomics data of this pathogen. Methods The human-avirulent Y. pestis strain 91001 was cultured as an experimental strain, and the proteins of which were extracted and divided into three parts fractionally according to their solubility. Then three different methods (Shotgun-LC-MS-MS, 1D-LC-MS-MS and 2D-MS) were used to analyze the extracted proteins. The obtained data were compared with the theoretical protein database of strain 91001 so as to identify the expressed protein of Y.pestis strain 91001 in this study. Results 971 proteins were identified by shotgun-LC-MS-MS method, accounting for 23.4% of the predicted proteins of strain 91001 (971/4 143). 915 proteins were identified by 1D-LC-MS-MS method, accounting for 22.1% of the predicted proteins of strain 91001 (915/4 143). However, with 2D-MS only 5.62% of the predicted proteins (233/4 143) were identified. Altogether 1 193 proteins were identified when the results of the 3 methods added together, accounting for 28.7% of all the predicted CDS in 91001. Conclusion The kind and quantity of proteins identified by various proteomics methods differ from each other dramatically, therefore it is necessary to utilize multiple methods to get more reliable protein profiles of Y. pestis.