Structural studies of B-type Aurora kinase inhibitors using computational methods |
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Authors: | MM NEAZ M MUDDASSAR FA PASHA Seung Joo CHO |
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Institution: | [1]Department of Cellular Molecular Medicine and Research Center for Resistant Cells, College of Medicine, Chosun University, Gwangju 501-759, South Korea; [2]Computational Science Center, Future Fusion Technology Division, Korea Institute of Science and Technology, PO Box 131, Seou1130-650, South Korea; [3]Korea University of Science and Technology, 52, Eoeun-dong, Yuseong-gu, Daejon 305- 333, South Korea |
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Abstract: | Aim:To characterize the structural features of quinazoline-based Aurora B inhibitors that influence its inhibitor activity.Methods:Two geometrical methods, Method 1 and Method 2, were used to develop the 3D-QSAR models. The most active ligand was used as the template for the alignment of all the ligands in Method 1, and a conformer of the cocrystal ligand was used as the template for the alignment of all the ligands in Method 2.Results:The models suggest that highly active ligands can be designed by varying the R1 substituent at position 7 of the quinazoline ring with positively charged, bulky, hydrophobic groups, while bulky and hydrophobic groups around the thiazole ring are desirable for higher activity.Conclusion:This study emphasizes that the bioactive conformer is rather different from the minima. The steric, electrostatic, and hydrophobic field effects contribute to its inhibitory activity. |
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Keywords: | 3D-QSAR drug design CoMFA CoMSIA Aurora B kinase |
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