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Evaluation of Prediction Accuracy for Volume of Distribution in Rat and Human Using In Vitro,In Vivo,PBPK and QSAR Methods
Authors:Shibin Mathew  David Tess  Woodrow Burchett  George Chang  Nathaniel Woody  Christopher Keefer  Christine Orozco  Jian Lin  Samantha Jordan  Shinji Yamazaki  Rhys Jones  Li Di
Affiliation:1. Pharmacokinetics, Dynamics and Metabolism, Pfizer Worldwide Research and Development, Cambridge, MA 02139, USA;2. Early Clinical Development, Pfizer Worldwide Research and Development, Groton, CT 06340, USA;3. Pharmacokinetics, Dynamics and Metabolism, Pfizer Worldwide Research and Development, Groton, CT 06340, USA;4. Pharmacokinetics, Dynamics and Metabolism, Pfizer Worldwide Research and Development, San Diego, CA 92121, USA
Abstract:Volume of distribution at steady state (Vss) is an important pharmacokinetic parameter of a drug candidate. In this study, Vss prediction accuracy was evaluated by using: (1) seven methods for rat with 56 compounds, (2) four methods for human with 1276 compounds, and (3) four in vivo methods and three Kp (partition coefficient) scalar methods from scaling of three preclinical species with 125 compounds. The results showed that the global QSAR models outperformed the PBPK methods. Tissue fraction unbound (fu,t) method with adipose and muscle also provided high Vss prediction accuracy. Overall, the high performing methods for human Vss prediction are the global QSAR models, Øie-Tozer and equivalency methods from scaling of preclinical species, as well as PBPK methods with Kp scalar from preclinical species. Certain input parameter ranges rendered PBPK models inaccurate due to mass balance issues. These were addressed using appropriate theoretical limit checks. Prediction accuracy of tissue Kp were also examined. The fu,t method predicted Kp values more accurately than the PBPK methods for adipose, heart and muscle. All the methods overpredicted brain Kp and underpredicted liver Kp due to transporter effects. Successful Vss prediction involves strategic integration of in silico, in vitro and in vivo approaches.
Keywords:Distribution  Physiologically based pharmacokinetic (PBPK) modeling  Quantitative structure–activity relationship(s) (QSAR)  Absorption, distribution, metabolism, and excretion (ADME)  Pharmacokinetics  Protein binding  Tissue partition  Log partition coefficient (s) (log P/log PC)  Partition coefficient(s)  Interspecies (dose) scaling  AAFE"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  kwrd0065"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  absolute average fold error  AFE"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  kwrd0075"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  average fold error  AUC"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  kwrd0085"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  area under the curve  AUMC"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  kwrd0095"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  area under the first moment curve  Bcrp"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  kwrd0105"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  breast cancer resistance protein  BW"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  kwrd0115"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  body weight  DMSO"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  kwrd0145"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  dimethyl sulfoxide  ELogD"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  kwrd0165"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  a reverse phase chromatographic method for measurement of LogD  GBM"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  kwrd0235"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  gradient boosting machine  IV"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  kwrd0255"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  intravenous  LC-MS/MS"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  kwrd0295"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  liquid chromatography tandem mass spectrometry  LogD"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  kwrd0305"  },"  $$"  :[{"  #name"  :"  text"  ,"  $$"  :[{"  #name"  :"  __text__"  ,"  _"  :"  Log"  },{"  #name"  :"  inf"  ,"  $"  :{"  loc"  :"  post"  },"  _"  :"  10"  },{"  #name"  :"  __text__"  ,"  _"  :"   of distribution coefficient  LogP"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  kwrd0325"  },"  $$"  :[{"  #name"  :"  text"  ,"  $$"  :[{"  #name"  :"  __text__"  ,"  _"  :"  Log"  },{"  #name"  :"  inf"  ,"  $"  :{"  loc"  :"  post"  },"  _"  :"  10"  },{"  #name"  :"  __text__"  ,"  _"  :"   of partition coefficient  NCA"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  kwrd0335"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  noncompartmental analysis  NL"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  kwrd0345"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  neutral lipids  NP"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  kwrd0355"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  neutral phospholipids  Oatps"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  kwrd0365"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  organic anion transporting polypeptides  PBPK"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  kwrd0375"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  physiologically based pharmacokinetic  PEG400"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  kwrd0385"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  polyethylene glycol 400  P-gp"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  kwrd0395"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  P-glycoprotein  PK"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  kwrd0405"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  pharmacokinetics  PR"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  kwrd0425"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  unknown protein species for mass balance  QSAR"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  kwrd0455"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  quantitative structure-activity relationship  RBC"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  kwrd0465"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  red blood cell  SF"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  kwrd0495"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  scaling factor  SFLogD"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  kwrd0505"  },"  $$"  :[{"  #name"  :"  text"  ,"  $$"  :[{"  #name"  :"  __text__"  ,"  _"  :"  Log"  },{"  #name"  :"  inf"  ,"  $"  :{"  loc"  :"  post"  },"  _"  :"  10"  },{"  #name"  :"  __text__"  ,"  _"  :"   of distribution coefficient by shake-flask method
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