首页 | 本学科首页   官方微博 | 高级检索  
     

面向精准医学的基因突变数据分类与融合研究
引用本文:吴萌,李姣,康宏宇,侯丽. 面向精准医学的基因突变数据分类与融合研究[J]. 中华医学图书情报杂志, 2018, 27(11): 16-22
作者姓名:吴萌  李姣  康宏宇  侯丽
作者单位:中国医学科学院/北京协和医学院医学信息研究所,北京 100020,中国医学科学院/北京协和医学院医学信息研究所,北京 100020,中国医学科学院/北京协和医学院医学信息研究所,北京 100020,中国医学科学院/北京协和医学院医学信息研究所,北京 100020
基金项目:国家重点研发计划“精准医学本体和语义网络构建”(2016YFC0901901);互联网医疗系统与应用国家工程实验室项目“面向跨院的电子病历数据融合关键技术与标准构建研究”(NELIMSA2018P02);医学融合出版知识技术重点实验室项目“医学知识服务关键技术研究”
摘    要:目的:通过调研现有的基因突变数据标准,包括分类标准、命名标准以及组织标准,制定一套整合式的基因突变数据分类体系以融合多来源异构的突变数据。方法:从ClinVar和COSMIC突变数据库中获取基因突变数据,根据数据特征对基因突变数据进行标准化融合。通过与已制定的分类体系进行映射,对融合后的基因突变数据进行标准化分类注释。结果:构建的基因突变分类体系包括术语34条,突变数据库包括突变概念746 504个,突变术语1 083 397个。结论:基因突变数据分类体系可提供一种有效的基因突变数据分类和突变数据整合方案,对推动突变数据的融合、标准化与共享和疾病的精准治疗具有重要意义。

关 键 词:精准医学;基因突变;数据融合;分类体系
收稿时间:2018-10-28

Classification of gene mutation data and gene fusion for precision medicine
WU Meng,LI Jiao,KANG Hong-yu and HOU Li. Classification of gene mutation data and gene fusion for precision medicine[J]. Chinese Journal of Medical Library and Information Science, 2018, 27(11): 16-22
Authors:WU Meng  LI Jiao  KANG Hong-yu  HOU Li
Affiliation:Institute of Medical Information, Chinese Academy of Medical Sciences/Beijing Union Medical College, Beijing 100020, China,Institute of Medical Information, Chinese Academy of Medical Sciences/Beijing Union Medical College, Beijing 100020, China,Institute of Medical Information, Chinese Academy of Medical Sciences/Beijing Union Medical College, Beijing 100020, China and Institute of Medical Information, Chinese Academy of Medical Sciences/Beijing Union Medical College, Beijing 100020, China
Abstract:Objective To develop an integrated classification system for gene mutation data in order to fuse the isomeric gene mutation data in multi-resources by investigating the existing standards for gene mutation data, including classification standards, nomenclature standards and organization standards. Methods The gene mutation data were extracted from the ClinVar and COSMIC mutation databases and fused with standard methods according to their characteristics. The fused gene mutation data were classified with annotations by mapping the developed classification system. Results The classification system for gene mutation data was consisted of 34 terminologies and the gene mutation database was consisted of 746 504 concepts and 1 083 397 mutation terminologies. Conclusion The classification system for gene mutation data can provide an effective plan for the classification and integration of gene mutation data, and is of great importance for promoting the fusion, standardization and sharing of gene mutation data, and the precision treatment of diseases.
Keywords:Precision medicine   Gene mutation   Data fusion   Classification system
点击此处可从《中华医学图书情报杂志》浏览原始摘要信息
点击此处可从《中华医学图书情报杂志》下载免费的PDF全文
设为首页 | 免责声明 | 关于勤云 | 加入收藏

Copyright©北京勤云科技发展有限公司  京ICP备09084417号