人偏肺病毒广州分离株全基因组序列测定及分析

目的 探讨广州地区儿童感染的偏肺病毒基因组分子结构特点和基因型类型.方法 参考GenBank上的偏肺病毒00-1株(AF371337)基因组设计分段扩增引物,进行RT-PCR分段扩增偏肺病毒基因组,克隆于T载体上,序列测定,用Clustal W/X、DNASTAR、MEGA4.1等软件分析基因组序列.结果 偏肺病毒hMPVgz01全基因组为13 327 bp,提交到GenBank上的序列号为GQ153651,有8个开放阅读框(open reading frames,ORFs),基因组结构为:3-N-P-M-F-M2-SH-G-L-5;将hMPVgz01株全基因组核苷酸序列与GenBank上的偏肺病毒全基因组序列进行Clustal W比较,发现与偏肺病毒的A组相似性较高,为92%～97%,与A2b组的BJ1887相似性为最高,而与B组相似性为81%,与C组的禽偏肺病毒为71%.将hMPVgz01株的N、F、G基因与偏肺病毒的A1、A2、B1、B2的相对应基因进行相似性比较,同样也是与A2b型的相似性为最高,因此确认广州地区的hMPVgz01株为A2b型.结论 广州地区儿童感染的偏肺病毒hMPVgz01株全基因组序列为13 327 bp,GenBank 序列号为GQ153651,hMPVgz01与偏肺病毒的A2b型相似性最高,确认hMPVgz01株属于偏肺病毒A2b型.

The complete genomic sequence analysis of human metapneumovirus hMPVgz01 strain in Guangzhou

Objective To study the genomic molecular organization and genogroup of human metapneumovirus(hMPV) infected infants in Guangzhou of China. Methods Primers were designed on the basis of the genomic sequence of hMPV 00-1 strain(AF371337) in the GenBank, and amplify hMPV genomeby RT-PCR. The PCR-products were cloned to T vector and sequenced, the genomic nucleotide sequences were analyzed with the programs Clustal W/X, DNASTAR and MEGA4. 1. Results The cloned strainhMPVgz01 genome is 13 327 bp in length, the genome contains eight open reading frames in the order 3-N-P-M-F-M2-SH-G-L-5. The genomic sequences of hMPVgz01 strain are compared with those of hMPV in GenBank, revealed that the homology with hMPV group A ranges between 92%-97%, homology with group B is 81%, and with avian metapneumovirus group C is 71%, the highest homology is with BJ1887 strain of genogroup A2b. The N, F, G genes of hMPVgz01 strain are compared with those corresponding genes of hMPV subgroups A1, A2, B1, B2, revealed that the highest homology is also with genogroup A2b. Conclusion The complete nucleotide sequence of hMPVgz01 strain isolated from Guangzhou in China is 13 327 bp in length, GenBank accession No. is GQ153651. Comparison of the genomic sequence and three genes of hMPVgz01 strain with those corresponding sequences of hMPV show the highest homology is with genogroup A2b. Sequence and phylogenetic analysis of the hMPVgz01 strain revegled that this isolate belongs to genogroupA2b.