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基于蛋白芯片的慢性肾衰舌苔上清液中蛋白研究
引用本文:程亚伟,何磊,廖萍,胡衡,金亚明,李福凤,王文静,郝一鸣,王忆勤. 基于蛋白芯片的慢性肾衰舌苔上清液中蛋白研究[J]. 世界科学技术-中医药现代化, 2011, 13(4): 616-621
作者姓名:程亚伟  何磊  廖萍  胡衡  金亚明  李福凤  王文静  郝一鸣  王忆勤
作者单位:上海中医药大学中医证实验室上海201203;上海中医药大学中医证实验室上海201203;上海市疾病预防控制中心公共卫生分子生物学研究室上海200336;上海市疾病预防控制中心公共卫生分子生物学研究室上海200336;上海中医药大学附属龙华医院肾内科上海200032;上海中医药大学中医证实验室上海201203;上海市疾病预防控制中心公共卫生分子生物学研究室上海200336;上海中医药大学中医证实验室上海201203;上海中医药大学中医证实验室上海201203
基金项目:上海市教委科研创新项目资助(08ZZ63):慢性肾功能衰竭中医湿证的生物学基础研究,负责人:王忆勤;上海市重点学科(第三期)中医诊断学经费资助(S30302),负责人:王忆勤。
摘    要:目的:通过比较慢性肾衰(CRF)患者与正常对照组人群舌苔上清液中蛋白表达谱的差异,筛选慢性肾衰舌苔蛋白标志物并建立预测模型,探讨其在慢性肾衰诊断中的意义。方法:对67例慢性肾衰患者和38 例正常对照组人群舌苔上清液样本,运用SELDI-TOF-MS 蛋白芯片技术筛选慢性肾衰舌苔蛋白标志物,经生物信息学分析建立预测模型并进行验证。结果:淤慢性肾衰组67 例和正常对照组38 例舌苔样本经SELDI-TOF-MS 技术测定,质荷比1000耀20000 范围内共检测到242个蛋白峰,经生物信息学统计分析,有13 个差异质谱峰有统计学意义(P<0.01),其中m/z 1092.68、m/z 1508.26 等7 个差异质谱峰在慢性肾衰组中呈高表达;m/z 13302.5、m/z 14330.7 等6 个差异质谱峰在慢性肾衰组中呈低表达。于利用层次聚类算法进行层次聚类分析和主成分分析(PCA),结果显示,慢性肾衰组与正常对照组样本之间区分较明显,但均存在部分重叠。盂经生物信息学分析建立慢性肾衰预测模型,最终得到m/z 1049.61、m/z 1076.94、m/z 15295.7 等7 个差异质谱峰组成的生物标记物可以将慢性肾衰组和正常对照组样品较好的分类(最终预测模型的灵敏度为61.4%,特异度为57.3%,预测正确率为64.4%)。结论:该研究运用SELDI-TOF-MS 蛋白芯片技术,初步筛选出了慢性肾衰舌苔蛋白标志物并建立了预测模型,为慢性肾衰的诊断研究提供客观依据。

关 键 词:慢性肾功能衰竭(CRF) 舌苔上清液蛋白芯片 SELDI-TOF-MS
收稿时间:2010-03-22
修稿时间:2010-07-07

Study on Proteinum in Clear Supernatant Liquid of Tongue Coating of Chronic Renal Failure Based on Protein Chip
Cheng Yawei,He Lei,Liao Ping,Hu Heng,Jin Yaming,Li Fufeng,Wang Wenjing,Hao Yiming and Wang Yiqin. Study on Proteinum in Clear Supernatant Liquid of Tongue Coating of Chronic Renal Failure Based on Protein Chip[J]. World Science and Technology—Modernization of Traditional Chinese Medicine and Materia Medica, 2011, 13(4): 616-621
Authors:Cheng Yawei  He Lei  Liao Ping  Hu Heng  Jin Yaming  Li Fufeng  Wang Wenjing  Hao Yiming  Wang Yiqin
Affiliation:Laboratory of Syndrome of TCM, Shanghai University of Traditional Chinese Medicine, Shanghai 201203, China;Laboratory of Syndrome of TCM, Shanghai University of Traditional Chinese Medicine, Shanghai 201203, China;Department of Molecular Biology for Public Health, Shanghai Municipal Center for Disease Control and Prevention, Shanghai 200336, China;Department of Molecular Biology for Public Health, Shanghai Municipal Center for Disease Control and Prevention, Shanghai 200336, China;Nephrology of Longhua Hospital of Shanghai University of Traditional Chinese Medicine,Shanghai 200032, China;Nephrology of Longhua Hospital of Shanghai University of Traditional Chinese Medicine,Shanghai 200032, China;Department of Molecular Biology for Public Health, Shanghai Municipal Center for Disease Control and Prevention, Shanghai 200336, China;Laboratory of Syndrome of TCM, Shanghai University of Traditional Chinese Medicine, Shanghai 201203, China;Laboratory of Syndrome of TCM, Shanghai University of Traditional Chinese Medicine, Shanghai 201203, China
Abstract:This study aimed to screen proteinum markers of tongue coating related to chronic renal failure (CRF) and establish the predictive model by comparing differences of protein spectrum expression in clear supernatant liquid of tongue coating between CRF patients and normal controls in order to explore its significance in the diagnosis of CRF. Clear supernatant liquid of tongue coating samples of 67 CRF patients and 38 normal controls were used in the study. Proteinum markers of tongue coating were selected according to CRF with technique of SELDI-TOF-MS.The predictive model was established and verified by bioinformatics analysis. Results showed that tongue coating samples of 67 CRF patients and 38 normal samples in the control group were determined by technique of SELDITOF-MS. All 242 proteinum peaks have been detected at 1000-20000 e/m. And 13 distinct mass spectrum peaks have been analyzed by bioinformatics with statistical significance (P< 0.01). Seven distinct mass spectrum peaks,such as m/z 1092.68 and m/z 1508.26, show high expression in CRF group. Six distinct mass spectrum peaks, such as m/z 13302.5 and m/z 14330.7, show low expression in CRF group. Fuzzy grouping algorithm was used in the fuzzy grouping analysis and principal component analysis (PCA) between CRF group and normal control group. The result showed discrimination, but partly overlapping. The predictive model of CRF is analyzed and established by bioinformatics with biological markers which are constituted with 7 distinct mass spectrum peaks, such as m/z1049.61, m/z 1076.94, m/z 15295.7, and etc. The predictive model can be used in the sample classification between CRF group and normal control group. (The sensitivity of predictive model is 61.4%. The specificity is 57.3%. And predictive exactitude rate is 64.4%.) It is concluded that using technique of SELDI-TOF-MS, the proteinum markers of tongue coating of CRF have been preliminarily screened. The established predictive model provides objectiveevidence for the study on CRF diagnosis.
Keywords:Chronic renal failure (CRF)   clear supernatant liquid of tongue coating   protein chip   SELDI-TOF-MS
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