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High resolution histopathology image generation and segmentation through adversarial training
Affiliation:1. Computational Diagnostics Lab, UCLA, Los Angeles, USA;2. The Department of Electrical and Computer Engineering, UCLA, Los Angeles, USA;3. The Department of Bioengineering, UCLA, Los Angeles, USA;4. The Department of Radiological Sciences, UCLA, Los Angeles, USA;5. The Department of Pathology & Laboratory Medicine, UCLA, Los Angeles, USA;1. Beijing Advanced Innovation Center for Biomedical Engineering, Beihang University, Beijing 100191, China;2. Image Processing Center, School of Astronautics, Beihang University, Beijing 102206, China;3. Department of Pathology, Tianjin Fifth Central Hospital, Tianjin 300450, China;4. School of Software, Hefei University of Technology, Hefei 230601, China;5. Wankangyuan Tianjin Gene Technology, Inc, Tianjin 300220, China;6. Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin 300308, China;1. Department of Radiology, Guangdong Provincial People’s Hospital, Guangdong Academy of Medical Sciences, Guangzhou, Guangdong 510080, China;2. Guangdong Cardiovascular Institute, Guangzhou, China;3. Guangdong Provincial Key Laboratory of Artificial Intelligence in Medical Image Analysis and Application, Guangdong Provincial People’s Hospital, Guangdong Academy of Medical Sciences, Guangzhou 510080, China;4. School of Computer Science and Information Security, Guilin University of Electronic Technology, Guilin 541004, China;5. Department of Radiology, The Affiliated Cancer Hospital of Zhengzhou University & Henan Cancer Hospital, Zhengzhou 450008, China;6. Department of Radiology, Guangzhou First People’s Hospital,the Second Affiliated Hospital of South China University of Technology, Guangzhou, Guangdong 510180, China;1. Physical Sciences, Sunnybrook Research Institute, Toronto, Canada;2. Department of Medical Biophysics, University of Toronto, Canada;3. Department of Computer Science, University of Toronto, Canada;4. Department of Electrical & Computer Engineering, University of Toronto, Canada;1. School of Information Science and Engineering, Shandong University, Qingdao, Shandong, China;2. School of Software, Shandong University, Jinan, Shandong, China;3. School of Medicine, Shandong University, Jinan, Shandong, China;4. Department of Cardiology, Qilu Hospital, Cheeloo College of Medicine, Shandong University, Jinan, Shandong, China;5. The Key Laboratory of Cardiovascular Remodeling and Function Research, Chinese Ministry of Education, Chinese National Health Commission and Chinese Academy of Medical Sciences, The State and Shandong Province Joint Key Laboratory of Translational Cardiovascular Medicine, Shandong University, Jinan, Shandong, China;6. School of Biomedical Engineering, Western University, London, ON, Canada
Abstract:Semantic segmentation of histopathology images can be a vital aspect of computer-aided diagnosis, and deep learning models have been effectively applied to this task with varying levels of success. However, their impact has been limited due to the small size of fully annotated datasets. Data augmentation is one avenue to address this limitation. Generative Adversarial Networks (GANs) have shown promise in this respect, but previous work has focused mostly on classification tasks applied to MR and CT images, both of which have lower resolution and scale than histopathology images. There is limited research that applies GANs as a data augmentation approach for large-scale image semantic segmentation, which requires high-quality image-mask pairs. In this work, we propose a multi-scale conditional GAN for high-resolution, large-scale histopathology image generation and segmentation. Our model consists of a pyramid of GAN structures, each responsible for generating and segmenting images at a different scale. Using semantic masks, the generative component of our model is able to synthesize histopathology images that are visually realistic. We demonstrate that these synthesized images along with their masks can be used to boost segmentation performance, especially in the semi-supervised scenario.
Keywords:
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