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Role of upregulated miR-136-5p in lung adenocarcinoma: A study of 1242 samples utilizing bioinformatics analysis
Authors:Tian-tian Li  Xiang Gao  Li Gao  Bin-liang Gan  Zu-cheng Xie  Jing-jing Zeng  Gang Chen
Institution:Department of Pathology, First Affiliated Hospital of Guangxi Medical University, 6 Shuangyong Road, Nanning, Guangxi Zhuang Autonomous Region, 530021, PR China
Abstract:

Background

It is generally acknowledged that miRNAs play pivotal roles in the initiation and development of cancer. The aim of the current study is to investigate the clinicopathological role of miR-136-5p in lung adenocarcinoma and its underlying molecular mechanism.

Materials and methods

Data of a cohort of 1242 samples were provided by the Gene Expression Omnibus and The Cancer Genome Atlas to evaluate miR-136-5p expression in lung adenocarcinoma. A comprehensive meta-analysis integrating the expression data from all sources was performed, followed by a summary receiver operating curve plotted to appraise the upregulated expression of miR-136-5p in lung adenocarcinoma. Candidate targets of miR-136-5p were launched by the intersection of differentially expressed genes in The Cancer Genome Atlas and genes predicted by 12 web-based platforms. Then, hub genes were illustrated by a protein-protein interaction network. Furthermore, Kyoto Encyclopedia of Genes and Genomes, Gene Ontology and Protein Analysis Through Evolutionary Relationships analyses of potential target genes were carried out via bioinformatics tools.

Results

MiR-136-5p expression was upregulated in lung adenocarcinoma versus normal tissues (standard mean difference?=?0.43, 95% confidence interval: 0.27-0.58). The summary receiver operating characteristic curve further verified the upregulation of miR-136-5p in lung adenocarcinoma (area under curve?=?0.7459). A total of 311 candidate target genes of miR-136-5p were gathered to create a protein-protein interaction network. Molecular mechanism analysis unveiled the potential miR-136-5p target genes participated in cell adhesion molecules, focal adhesion, complement and coagulation cascades and blood coagulation.

Conclusion

MiR-136-5p is overexpressed in lung adenocarcinoma and is involved in the molecular mechanism of lung adenocarcinoma via suppressing the expressions of downstream targets, especially claudin-18, sialophorin and syndecan 2 that participate in cell adhesion.
Keywords:NSCLC  non small cell lung cancer  SCLC  small cell lung cancer  LUAD  lung adenocarcinoma  miRNAs  microRNAs  GO  Gene Ontology  KEGG  Kyoto Encyclopedia of Genes and Genomes  PANTHER  Protein Analysis Through Evolutionary Relationships  GEO  Gene Expression Omnibus  TCGA  The Cancer Genome Atlas  M  mean  SD  standard deviation  SMD  standard mean difference  ROC  receiver operating curve  SEN  sensitivity  SPE  specificity  PLR  positive likelihood ratio  NLR  negative likelihood ratio  DOR  diagnostic odds ratio  SROC  summary receiver operating curve  AUC  area under curve  DEGs  differentially expressed genes  RPM  reads per million  STRING  Search Tool for the Retrieval of Interacting Genes  PPI  protein-protein interaction  DAVID  Database for Annotation  Visualization and Integrated Discovery  CC  cellular component  BP  biological process  MC  molecular function  GEPIA  Gene Expression Profiling Interactive Analysis  IHC  immunohistochemistry  CAMs  cell adhesion molecules  CLDN18  claudin-18  ITGA8  integrin alpha-8  NFASC  neurofascin  NEGR1  neuronal growth regulator-1  JAM3  junctional adhesion molecule 3  SPN  sialophorin  SDC2  syndecan  ALK  anaplastic lymphoma kinase  EGFR  epidermal growth factor receptor  VGEFA  vascular endothelial growth factor A  Lung adenocarcinoma  miR-136a-5p  Meta-analysis  Bioinformatics  Cell adhesion molecules
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