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Germline mutations and new copy number variants among 40 pediatric cancer patients suspected for genetic predisposition
Authors:Antonella Gambale  Roberta Russo  Immacolata Andolfo  Lucia Quaglietta  Gianluca De Rosa  Valentina Contestabile  Lucia De Martino  Rita Genesio  Piero Pignataro  Sabrina Giglio  Mario Capasso  Rosanna Parasole  Barbara Pasini  Achille Iolascon
Affiliation:1. Dipartimento di Medicina Molecolare e Biotecnologie Mediche, Università degli Studi di Napoli Federico II, Naples, Italy;2. Azienda Ospedaliera di Rilievo Nazionale Santobono Pausilipon, S.C. Pediatria Oncologia, Dip. di Oncoematologia Pediatrica Napoli, Italy;3. Dipartimento di Medicina Molecolare e Biotecnologie Mediche, Università degli Studi di Napoli Federico II, Naples, Italy

CEINGE Biotecnologie Avanzate, Naples, Italy;4. Biomedical Experimental and Clinical Sciences "Mario Serio", University of Florence, Florence, Italy;5. Dipartimento di Scienze Mediche, Università degli Studi di Torino, Torino, Italy

Abstract:Cancer predisposition syndromes (CPS) result from germline pathogenic variants, and they are increasingly recognized in the etiology of many pediatric cancers. Herein, we report the genetic/genomic analysis of 40 pediatric patients enrolled from 2016 to 2018. Our diagnostic workflow was successful in 50% of screened cases. Overall, the proportion of CPS in our case series is 10.9% (20/184) of enrolled patients. Interestingly, 12.5% of patients achieved a conclusive diagnosis through the analysis of chromosomal imbalance. Indeed, we observed germline microdeletions/duplications of regions encompassing cancer-related genes in 50% of patients undergoing array-CGH: EIF3H duplication in a patient with infantile desmoplastic astrocytoma and low-grade Glioma; SLFN11 deletion, SOX4 duplication, and PARK2 partial deletion in three neuroblastoma patients; a PTPRD partial deletion in a child diagnosed with glioblastoma multiforme. Finally, we identified two cases due to DICER1 germline mutations.
Keywords:cancer predisposition syndromes  genetic testing  genotype-phenotype relationship
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