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Exome sequencing in a Romanian Bardet-Biedl syndrome cohort revealed an overabundance of causal BBS12 variants
Authors:Sheraz Khan  Ina Ofelia Focșa  Magdalena Budișteanu  Cristina Stoica  Florina Nedelea  Laurențiu Bohîlțea  Lavinia Caba  Lăcrămioara Butnariu  Monica Pânzaru  Cristina Rusu  Claudia Jurcă  Adela Chirita-Emandi  Claudia Bănescu  Wasim Abbas  Azita Sadeghpour  Shahid Mahmood Baig  Mihaela Bălgrădean  Erica E Davis
Institution:1. Stanley Manne Children's Research Institute, Ann & Robert H. Lurie Children's Hospital of Chicago, Chicago, Illinois, USA

Human Molecular Genetics Lab, Health Biotechnology Division, National Institute for Biotechnology and Genetic Engineering (NIBGE-C), Faisalabad, Pakistan

Pakistan Institute of Engineering and Applied Sciences (PIEAS), Islamabad, Pakistan;2. University of Medicine and Pharmacy “Carol Davila”, Bucharest, Romania

Cytogenomic Medical Laboratory, Bucharest, Romania;3. Psychiatry Research Laboratory, “Prof. Dr. Alexandru Obregia” Clinical Hospital of Psychiatry, Bucharest, Romania

Medical Genetic Laboratory, “Victor Babeș” National Institute of Pathology, Bucharest, Romania

Department of Medical Genetics, Faculty of Medicine, “Titu Maiorescu” University, Bucharest, Romania;4. University of Medicine and Pharmacy “Carol Davila”, Bucharest, Romania

Department of Pediatrics, Clinical Institute Fundeni, Bucharest, Romania;5. University of Medicine and Pharmacy “Carol Davila”, Bucharest, Romania

Genetics Department, Clinical Hospital Filantropia, Bucharest, Romania;6. University of Medicine and Pharmacy “Carol Davila”, Bucharest, Romania;7. Department of Medical Genetics, “Grigore T. Popa” University of Medicine and Pharmacy, Iași, Romania;8. Department of Medical Genetics, “Grigore T. Popa” University of Medicine and Pharmacy, Iași, Romania

Regional Medical Genetics Centre, “Sf. Maria” Children's Hospital, Iași, Romania;9. Department of Genetics, Faculty of Medicine and Pharmacy, University of Oradea, Oradea, Romania

Department of Pediatrics, “Dr. Gavril Curteanu” Municipal Clinical Hospital, Oradea, Romania;10. Emergency Hospital for Children Louis Turcanu, Regional Center of Medical Genetics Timis, Timisoara, Romania;11. “George Emil Palade” University of Medicine, Pharmacy, Sciences and Technology, Târgu Mureş, Romania;12. Human Molecular Genetics Lab, Health Biotechnology Division, National Institute for Biotechnology and Genetic Engineering (NIBGE-C), Faisalabad, Pakistan

Pakistan Institute of Engineering and Applied Sciences (PIEAS), Islamabad, Pakistan;13. Center for Human Disease Modeling, Duke University Medical Center, Durham, North Carolina, USA

Duke Precision Medicine Program, Department of Medicine, Division of General Internal Medicine, Duke University Medical Center, Durham, NC, USA;14. Pakistan Science Foundation (PSF), Islamabad, Pakistan

Department of Biological and Biomedical Sciences, Agha Khan University Karachi, Karachi, Pakistan;15. University of Medicine and Pharmacy “Carol Davila”, Bucharest, Romania

Department of Pediatrics and Pediatric Nephrology, Emergency Clinical Hospital for Children “Maria Skłodowska Curie”, Bucharest, Romania;16. Stanley Manne Children's Research Institute, Ann & Robert H. Lurie Children's Hospital of Chicago, Chicago, Illinois, USA

Abstract:Bardet-Biedl syndrome (BBS), is an emblematic ciliopathy hallmarked by pleiotropy, phenotype variability, and extensive genetic heterogeneity. BBS is a rare (~1/140,000 to ~1/160,000 in Europe) autosomal recessive pediatric disorder characterized by retinal degeneration, truncal obesity, polydactyly, cognitive impairment, renal dysfunction, and hypogonadism. Twenty-eight genes involved in ciliary structure or function have been implicated in BBS, and explain the molecular basis for ~75%–80% of individuals. To investigate the mutational spectrum of BBS in Romania, we ascertained a cohort of 24 individuals in 23 families. Following informed consent, we performed proband exome sequencing (ES). We detected 17 different putative disease-causing single nucleotide variants or small insertion–deletions and two pathogenic exon disruptive copy number variants in known BBS genes in 17 pedigrees. The most frequently impacted genes were BBS12 (35%), followed by BBS4, BBS7, and BBS10 (9% each) and BBS1, BBS2, and BBS5 (4% each). Homozygous BBS12 p.Arg355* variants were present in seven pedigrees of both Eastern European and Romani origin. Our data show that although the diagnostic rate of BBS in Romania is likely consistent with other worldwide cohorts (74%), we observed a unique distribution of causal BBS genes, including overrepresentation of BBS12 due to a recurrent nonsense variant, that has implications for regional diagnostics.
Keywords:ciliopathy  pleiotropy  polydactyly  retinal dystrophy  second-site modifiers  urogenital malformations
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