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Comparison of gene expression profiles between white and brown adipose tissues of rat by microarray analysis
Authors:Unami Akira  Shinohara Yasuo  Kajimoto Kazuaki  Baba Yoshinobu
Institution:Faculty of Pharmaceutical Sciences, The University of Tokushima, Japan. akira_unami@po.fujisawa.co.jp
Abstract:To characterize the energy metabolism in brown adipose tissue (BAT), the differences in gene expression profiles between BAT and white adipose tissue (WAT) were analyzed using a high-density cDNA microarray. RNAs isolated from two adipose tissues were hybridized to an Agilent rat cDNA Microarray that contained about 14,500 cDNA probe sets. The expression levels of 499 cDNA/ESTs were found to be at least 5-fold higher or lower in BAT than in WAT. Consistent with our previous findings, high expression levels of genes encoding uncoupling protein 1, muscle-type carnitine palmitoyltransferase and some other proteins involved in energy metabolism in BAT were found. Most of the genes encoding mitochondrial proteins, such as subunits of ATP synthase, cytochrome c oxidase, and NADH dehydrogenase, were highly expressed, reflecting possible differences in the cellular content of mitochondria between BAT and WAT. However, the expression levels of several genes encoding mitochondrial protein, such as liver mitochondrial aldehyde dehydrogenase and dicarboxylate carrier, were remarkably lower in BAT. These results may give important clues to understand the unique energy metabolism in BAT.
Keywords:ACC  acetyl-CoA carboxylase  BAT  brown adipose tissue  CC  carnitine carrier  Cy3 and Cy5  cyanine 3 and cyanine 5  DIC  dicarboxylate carrier  EST  expressed sequence tag  ICDH  isocitrate dehydrogenase  LCAD  long-chain acyl-CoA dehydrogenase  LMADH  liver mitochondrial aldehyde dehydrogenase  LPL  lipoprotein lipase  MCAD  medium-chain acyl-CoA dehydrogenase  M- and L-CPTI  muscle- and liver-type carnitine palmitoyltransferase  NADH-U  NADH dehydrogenase  UCP  uncoupling protein  WAT  white adipose tissue
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