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Unrestricted principal components analysis of brain electrical activity: Issues of data dimensionality,artifact, and utility
Authors:Frank H. Duffy  Kenneth Jones  Peter Bartels  Gloria McAnulty  Marilyn Albert
Affiliation:(1) Department of Neurology, Childrens Hospital and Harvard Medical School, 300 Longwood Avenue, 02115 Boston, MA, USA;(2) Florence Heller Graduate School for Advanced Studies in Social Welfare, Brandeis University, Waltham, MA, USA;(3) Optical Sciences Center, University of Arizona, Tuscon, AZ, USA;(4) Departments of Neurology and Psychiatry, Massachusetts General Hospital and Harvard Medical School, Boston, MA, USA
Abstract:Summary Principal components analysis (PCA) was performed on the 1536 spectral and 2944 evoked potential (EP) variables generated by neurophysiologic paradigms including flash VER, click AER, and eyes open and closed spectral EEG from 202 healthy subjects aged 30 to 80. In each case data dimensionality of 1500 to 3000 was substantially reduced using PCA by magnitudes of 20 to over 200. Just 20 PCA factors accounted for 70% to 85% of the variance. Visual inspection of the topographic distribution of factor loading scores revealed complex loadings across multiple data dimensions (time-space and frequency-space). Forty-two non-artifactual factors were successful in classifying age, gender, and a separate group of 60 demented patients by linear discriminant analysis. Discrimination of age and gender primarily involved EP derived factors, whereas dementia primarily involved EEG derived factors. Thirty-eight artifactual factors were identified which, alone, could not discriminate age but were relatively successful in discriminating gender and dementia. The need to parsimoniously develop real neurophysiologic measures and to objectively exclude artifact are discussed. Unrestricted PCA is suggested as a step in this direction.Acknowledgements: This work was supported in part by NIA program project PO1AG049853 to M. Albert and the Mental Retardation Program Project P30HD18655 to J.J. Volpe. We thank our qEEG technologists Adele Mirabella, Susan Katz, Ellen Belles, and Marianne McGaffigan as well as our research secretaries for their unflagging support.
Keywords:Spectral analysis  Evoked potentials  Principal components analysis  Singular value decomposition  Discriminant function analysis  Artifact  Dimensionality  Aging  Dementia
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