Conformation of O6-alkylguanosines: molecular mechanism of mutagenesis

The O⁶-alkylation of guanine residues in DNA treated with alkylatingagents induce mutations due to mis-pairing resulting from thedeprotonation of N1. In addition to the deprotonation of N1,the conformation of the O⁶-alkyl group with respect to N7 ofguanine is very important. Here, we present X-ray crystallographicevidence that shows that the methyl group in O⁶-methylguanosinehas a preference for the distal conformation, blocking the Watson-Cricksites. This distal conformation persists in the solid statefor several analogs of O⁶-alkylguanosine also. This preferredconformation agrees with the result that poly(O⁶-methyl GMP)does not form any stable complex with poly(U). However, themispairing of O⁶-methylguanine with thymine and the resultantGA transition is known from in vitro studies. The above twoopposite results strongly indicate that the conformation ofthe O⁶-alkyl group and the base pairing properties of O⁶-alkylguanineat the monomer and polymer levels must be different from thesituation when the modified base is embedded with a small frequencyin a duplex. It is interesting to note that the sterical blockingof the Watson-Crick site at the monomer level and the alteredbase pairing properties when present as occasional bases ina duplex emerge as a common property for several mutagenic baseslike O⁶-alkylguanmes, O⁴ -methyluracil and N⁴-hydroxycytosine.