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Artificial intelligence solution to classify pulmonary nodules on CT
Affiliation:1. QuantaCell, IRMB, Hôpital Saint-Eloi, 34090 Montpellier, France;2. Department of Radiology, Neuroradiology unit, Assistance Publique-Hôpitaux de Paris, Hôpital Bichat Claude Bernard, 75018 Paris, France;3. Université de Paris, 75010, Paris, France;4. >IBM Cognitive Systems Lab, 34000 Montpellier, France;5. IBM Cognitive Systems France, 92270 Bois-Colombes, France;6. Department of Radiology and Medical Imaging, CHU Nîmes, University Montpellier, EA2415, 30029 Nîmes, France;7. Department of Radiology, Hôpital Universitaire Pontchaillou, 35000 Rennes, France;8. Department of thoracic and cardiovascular Imaging, Respiratory Diseases Service, Respiratory Functional Exploration Service, Hôpital universitaire de Bordeaux, CIC 1401, 33600 Pessac, France;9. Department of Radiology, Hôpital Cochin, Assistance Publique-Hôpitaux de Paris, 75014, Paris, France & Université de Paris, 75006 Paris, France;10. Department of Radiology and Medical Imaging, CHU Grenoble Alpes, 38700 Grenoble, France;11. Department of Radiology, Hôpital Universitaire Pasteur, Nice, France;12. Inserm UMR 1272, Université Sorbonne Paris Nord, Assistance Publique-Hôpitaux de Paris, Department of Radiology, Hôpital Avicenne, 93430 Bobigny, France;13. Department of radiology B, CHU Gabriel Montpied, 63003 Clermont-Ferrand, France;14. Department of Radiology, Institut Gustave Roussy, 94800 Villejuif, France;15. Department of Neuroradiology, Hôpital Gui-de-Chauliac, CHRU de Montpellier, 34000 Montpellier, France;p. Department of Radiology, CH Douai, 59507 Douai, France;q. Department of Radiology, Nouvel Hôpital Civil, 67000 Strasbourg, France;r. Department of Radiology, CHRU de Jean-Minjoz Besançon, 25030 Besançon, France;s. Clinical Research Unit, Clinical Research and Innovation Delegation, Centre de Lutte contre le Cancer, Centre Jean Perrin, 63011 Clermont-Ferrand Cedex 1, France;t. Université Clermont Auvergne,INSERM, U1240 Imagerie Moléculaire et Stratégies Théranostiques, Centre Jean Perrin, 63011 Clermont-Ferrand, France;u. Clinical Investigation Center, UMR501, 63011 Clermont-Ferrand, France;v. Department of Medical Oncology, Centre Jean Perrin, 63011 Clermont-Ferrand, France;w. Digital Transformation and Information Systems Division, Gustave Roussy, 94800 Villejuif, France;x. Multimodal Biomedical Imaging Laboratory Paris-Saclay, BIOMAPS, UMR 1281, Université Paris-Saclay, Inserm, CNRS, CEA, Department of Radiology, Institut Gustave Roussy, 94800, Villejuif, France;y. Department of Radiology, Centre Jean Perrin, 63011 Clermont-Ferrand, France
Abstract:PurposeThe purpose of this study was to create an algorithm to detect and classify pulmonary nodules in two categories based on their volume greater than 100 mm3 or not, using machine learning and deep learning techniques.Materials and methodThe dataset used to train the model was provided by the organization team of the SFR (French Radiological Society) Data Challenge 2019. An asynchronous and parallel 3-stages pipeline was developed to process all the data (a data “pre-processing” stage; a “nodule detection” stage; a “classifier” stage). Lung segmentation was achieved using 3D U-NET algorithm; nodule detection was done using 3D Retina-UNET and classifier stage with a support vector machine algorithm on selected features. Performances were assessed using area under receiver operating characteristics curve (AUROC).ResultsThe pipeline showed good performance for pathological nodule detection and patient diagnosis. With the preparation dataset, an AUROC of 0.9058 (95% confidence interval [CI]: 0.8746–0.9362) was obtained, 87% yielding accuracy (95% CI: 84.83%–91.03%) for the “nodule detection” stage, corresponding to 86% specificity (95% CI: 82%–92%) and 89% sensitivity (95% CI: 84.83%–91.03%).ConclusionA fully functional pipeline using 3D U-NET, 3D Retina-UNET and classifier stage with a support vector machine algorithm was developed, resulting in high capabilities for pulmonary nodule classification.
Keywords:Lung cancer  Pulmonary nodule  Support vector machine  Deep learning  Machine learning.  2D"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  kw0035"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  two-dimensional  3D"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  kw0045"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  Three-dimensional  AI"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  kw0055"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  Artificial intelligence  AUC"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  kw0065"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  Area under the curve  AUROC"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  kw0075"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  Area under receiver operating characteristics curve  CAD"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  kw0085"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  Computer-aided diagnostic  CNN"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  kw0095"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  Convolutional neural network  CPU"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  kw0105"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  Central processing units  CT"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  kw0115"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  Computed tomography  FN"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  kw0125"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  False negative  FP"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  kw0135"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  False positive  GPU"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  kw0145"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  Graphics processing units  HU"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  kw0155"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  Hounsfield unit  LIDC"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  kw0165"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  Lung Image Database Consortium  R-CNN"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  kw0175"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  Region-based convolutional neural network  RFE"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  kw0185"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  Recursive feature elimination  ROC"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  kw0195"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  Receiver operating characteristics  SVM"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  kw0205"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  Support vector machine
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