Conservation of a Hairpin Ribozyme Sequence in HIV-1 Is Required for Efficient Viral Replication |
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Authors: | OSAMU YAMADA, GÜ NTER KRAUS, BRUNO SARGUEIL, QIAO YU, JOHN M. BURKE,FLOSSIE WONG-STAAL |
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Affiliation: | aDepartment of Medicine, University of California at San Diego, La Jolla, California, 92093-0665;cDepartment of Microbiology and Molecular Genetics, University of Vermont, Burlington, Vermont, 05405;bDepartment of Microbiology and Immunology, University of Miami, Miami, Florida, 33124 |
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Abstract: | We have previously described a hairpin ribozyme that targets a highly conserved sequence in the U5 region of HIV-1. To determine if escape mutations would compromise virus replication, we introduced critical mutations into the ribozyme target site of an infectious molecular clone of HIV-1MN. HIV-1 MNAhas a substitution of A for G immediately 3′ to the cleavage site and HIV-1 MNGChas two substitutions in the flanking sequences that are complementary to the ribozyme.In vitrostudies confirmed that neither the MNA- nor the MNGC-mutated target sequence was cleaved by the ribozyme, and furthermore, the MNGC-mutated target sequence failed to bind the ribozyme. Compensatory GC substitutions in the substrate recognition domain of the ribozyme resulted in a switch of binding and cleavage specificity. Replication of both the MNAand MNGCmutant viruses was initially two to three logs lower than that of wild-type virus, but after 3 weeks, virus production rose sharply in both cultures. Nucleotide sequence of RT-PCR-amplified viral sequences obtained from virus produced at later time points revealed complete reversion of MNAor partial reversion of MNGCto wild-type genotypes. No additional mutations within the ribozyme target sequence were observed. These results indicate that mutations in this conserved ribozyme target sequence led to significant attenuation of HIV-1MN. |
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