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基于DNA条形码对凉山虫草及近缘物种和其混伪品的分子鉴定
引用本文:陈抒云,曹树萍,袁航,过立农,郑健,林羽,陈丹,林瑞超. 基于DNA条形码对凉山虫草及近缘物种和其混伪品的分子鉴定[J]. 世界科学技术-中医药现代化, 2014, 16(6): 1336-1346
作者姓名:陈抒云  曹树萍  袁航  过立农  郑健  林羽  陈丹  林瑞超
作者单位:福建中医药大学药学院 福州 350108;北京中医药大学中药学院 北京 100102;北京中医药大学中药学院 北京 100102;中国食品药品检定研究院中药民族药检定所 北京 100050;中国食品药品检定研究院中药民族药检定所 北京 100050;福建中医药大学药学院 福州 350108;福建中医药大学药学院 福州 350108;北京中医药大学中药学院 北京 100102
基金项目:国家自然科学基金委青年基金项目(81102767):虫草属真菌抗肺纤维化的活性成分及作用机制研究,负责人:郑健。
摘    要:目的:结合ITS基因和COI基因对《四川省中药材标准》收录的凉山虫草和近缘物种及当地市场上出现的混伪品进行分子鉴定,考察其方法的可行性。方法:对收集的28份样品通过DNA提取、PCR扩增,分别获得其ITS 序列和COI 序列。用Codon Code Aligner V3.7.1,Mega 5.0等软件进行比对分析,构建基于ITS 序列和COI 序列的样品的NJ 树,进行聚类分析。结果:凉山虫草和近缘物种及混伪品寄生真菌的ITS 序列种间最小K-2P距离大于各物种种内最大K-2P距离:种内变异小,种间差异较大,从而基于ITS序列的NJ 树能将凉山虫草与其他近缘物种及其混伪品很好地归属;凉山虫草和近缘物种及其混伪品寄主昆虫的COI序列种间最小K-2P距离大于各物种种内最大K-2P距离:种内变异小,种间差异较大,通过遗传距离及NJ树的分析能将凉山虫草与其他近缘物种其及其混伪品及其他近缘物种很好地区分。结论:结合ITS序列和COI序列的DNA条形码技术可以很好地鉴定凉山虫草与其近缘物种及其混伪品,并对虫草属的系统学和分类研究提供了技术支持。

关 键 词:凉山虫草 混伪品 ITS序列 COI序列DNA条形码
收稿时间:2014-01-06
修稿时间:2014-02-23

Molecular Identification of Metacordyceps Liangshanensis, Its Adulterants and Its Relative Species Based on DNA Barcode
Chen Shuyun,Cao Shuping,Yuan Hang,Guo Linong,Zheng Jian,Lin Yu,Chen Dan and Lin Ruichao. Molecular Identification of Metacordyceps Liangshanensis, Its Adulterants and Its Relative Species Based on DNA Barcode[J]. World Science and Technology—Modernization of Traditional Chinese Medicine and Materia Medica, 2014, 16(6): 1336-1346
Authors:Chen Shuyun  Cao Shuping  Yuan Hang  Guo Linong  Zheng Jian  Lin Yu  Chen Dan  Lin Ruichao
Affiliation:Pharmaceutical College, Fujian College of Traditional Chinese Medicine, Fuzhou 350108, China;School of Chinese Pharmacy, Beijing University of Chinese Medicine, Beijing 100102, China;Research and Inspection Center of Traditional Medicine and Ethnomedicine, National Institutes for Food and Drug Control, Beijing 100050, China
Abstract:This study was aimed to identify and distinguish Metacordyceps liangshanensis recorded by the Sichuan Province Traditional Chinese Medicine Standard from its adulterants and its relative species by combining ITS and COI barcode sequences in order to study the feasibility of this new method. After extracting DNA of 28 species of Cordyceps samples, DNA were amplified and sequenced. And then, ITS and COI sequences were received. CodonCode Aligner V3.7.1 and Mega 5.0 were used to analyze the variable site and construct the N-J tree. The results showed that the minimum ITS inter-specific K-2P distance was relatively higher than the maximum intra-specific K-2P distance. The inter-specific sequence divergence between M. liangshanensis and its adulterants exhibited high while intra-specific sequence divergence exhibited low. And COI one was the same case. N-J tree of both ITS and COI indicated that same genus belonged together and each species belonged to relatively independent branch. It was concluded that based on the ITS and COI gene, the technology of DNA barcode can be an excellent identification of M. liangshanensis, its adulterants and its relative species. It provided technical support for the further research on species molecular identification and phylogenetics of Cordyceps.
Keywords:Metacordyceps liangshanensis   adulterant   ITS sequences   COI sequences   DNA barcode
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