基于网络药理学和分子对接技术的抗病毒颗粒治疗新型冠状病毒肺炎(COVID-19)的潜在物质基础研究

目的通过网络药理学及分子对接技术探寻抗病毒颗粒治疗新型冠状病毒肺炎(COVID-19)的潜在物质基础。方法借助TCMSP检索抗病毒颗粒中板蓝根、连翘、石膏、知母、芦根、地黄、广藿香、石菖蒲、郁金的化学成分和作用靶点。通过Uni Prot数据库查询靶点对应的基因,进而运用Cytoscape3.6.1构建药材-化合物-靶点(基因)网络,通过DAVID进行基因本体(GO)功能富集分析和KEGG通路富集分析,预测其作用机制,将药材-化合物-靶点网络中排名前15的成分与新型冠状病毒(SARS-Co V-2)3CL水解酶进行分子对接,同时将比枯枯灵、木犀草素、槲皮素与血管紧张素转化酶Ⅱ(ACE2)进行分子对接。结果药材-化合物-靶点(基因)网络包含药材8个、化合物75个、靶点255个。GO功能富集分析得到GO条目161个(P<0.05),其中生物过程(BP)条目65个,细胞组成(CC)条目36个,分子功能(MF)条目60个。KEGG通路富集筛选得到131条信号通路(P<0.05)。分子对接结果显示抗病毒颗粒中比枯枯灵、木犀草素、槲皮素等核心活性化合物与SARS-Co V-23CL水解酶的亲和力与临床推荐化学药相似。结论抗病毒颗粒中的活性化合物比枯枯灵、木犀草素、槲皮素等能通过与ACE2结合作用于PTGS2、HSP90AB1、PTGS1等靶点调节多条信号通路,从而可能发挥对COVID-19的治疗作用。

Potential material basis of Kangbingdu Granules for treatment of coronavirus disease 2019 (COVID-19) based on network pharmacology and molecular docking technology

Objective To explore the potential material basis of Kangbingdu Granules for the treatment of coronavirus disease 2019 (COVID-19) through network pharmacology and molecular docking technology. Methods The chemical constituents and action targets of Isatidis Radix, Forsythiae Fructus, Gypsum Fibrosum, Anemarrhenae Rhizoma, Phragmitis Rhizoma, Rehmanniae Radix Praeparata, Pogostemon cablin, Acoritataninowii Rhizoma and Curcumae Radix in Kangbingdu Granules were searched by TCMSP. The gene corresponding to the target was searched by UniProt database, and Cytoscape 3.6.1 was used to build a medicinal material-compound-target (gene) network. DAVID was used to perform gene ontology (GO) function enrichment analysis and KEGG pathway enrichment analysis to predict its mechanism. Molecular docking of the top 15 components was carried out in the medicinal material-compound-target network with SARS-CoV-2 3CL hydrolase, and molecular docking with bicuculline, luteolin, quercetin and angiotensin-converting enzyme II (ACE2) was performed. Results The medicinal material-compound-target (gene) network contained eight medicinal materials, 75 compounds and 255 targets. GO function enrichment analysis revealed 161 GO items (P<0.05), including 65 biological process (BP) items, 36 cell composition (CC) items, and 60 molecular function (MF) items. KEGG pathway enrichment screened 131 signaling pathways (P<0.05). The results of molecular docking showed that the core active compounds such as bicuculline, luteolin, and quercetin in the Kangbingdu Granules had similar affinities with those recommended by COVID-19. Conclusion The active compounds in Kangbingdu Granules can interact with angiotensin-converting enzyme II (ACE2) via targets PTGS2, HSP90AB1, and PTGS1 to regulate multiple signaling pathways, thereby exerting therapeutic effects on COVID-19.