Analysis of pulsed field gel electrophoresis profiles using multiple enzymes for predicting potential source reservoirs for strains of Salmonella Enteritidis and Salmonella Typhimurium isolated from humans |
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| Institution: | 1. Center for Food Safety & Applied Nutrition, US Food & Drug Administration, College Park, MD 20740, USA;2. Center for Veterinary Medicine, US Food & Drug Administration, Laurel, MD 20708, USA;3. Department of Nutrition and Food Science, University of Maryland, College Park, MD 20742, USA;1. Key Laboratory of Environment Correlative Dietology (Huazhong Agricultural University), Ministry of Education, Wuhan 430070, China;2. National Research and Development Center for Egg Processing, Huazhong Agriculture University, Wuhan 430070, China;1. Dipartimento di Scienze AgroAlimentari, Ambientali e Animali, University of Udine, via Sondrio 2/A, 33100, Udine, Italy;2. The Avram and Stella Goldstein-Goren Department of Biotechnology Engineering, Ben-Gurion University of the Negev, Beer-Sheva, Israel;3. National Institute for Biotechnology in the Negev, Ben-Gurion University of the Negev, Beer-Sheva, 84105, Israel;4. The Ilse Katz Center for Meso and Nanoscale Science and Technology, Ben-Gurion University of the Negev, Beer-Sheva, 84105, Israel;5. School of Material Science and Engineering, Nanyang Technology University, Nanyang Avenue, 639798, Singapore;1. Department of Nutrition and Food Science, Texas A&M University, College Station, TX 77843-2253, USA;2. Department of Animal Science, Texas A&M AgriLife Research, College Station, TX 77843-2471, USA;3. Department of Animal Science, Texas A&M AgriLife Extension, College Station, TX 77843-2471, USA;4. Department of Statistics, University of Nebraska, Lincoln, NE 68588, USA;1. UMR 9190 MARBEC, IRD-Ifremer-CNRS-UM2, Université de Montpellier, CC 93, Place Eugène Bataillon, 34095 Montpellier Cedex 5, France;2. Instituto de Ecología, Pesquerías y Oceanografía de Golfo de México (EPOMEX), Universidad Autónoma de Campeche, Av. Héroe de Nacozari #480, C. P. 24029, Campeche, Mexico |
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| Abstract: | We reported previously on a highly discriminatory pulsed field gel electrophoresis-based (PFGE) subtyping scheme for Salmonella enterica serovar Enteritidis (SE) and Salmonella Typhimurium (ST) that relies on combined cluster analysis of up to six restriction enzymes. This approach allowed for the high-resolution separation of numerous poultry-derived SE and ST isolates into several distinct clusters that sorted along several geographical and host-linked boundaries. In this study, 101 SE and 151 ST strains isolated from poultry, swine, beef, mouse, and produce origins were combined with 62 human SE and ST isolates of unknown sources. PFGE profiles were generated across six restriction enzymes (XbaI, BlnI, SpeI, SfiI, PacI, and NotI) for human SE and ST isolates. The combined six-enzyme UPGMA trees of SE and ST revealed six separate origins of North American human SE isolates including one association with a “cosmopolitan” cluster of SEs from poultry originating in Scotland, Mexico, and China. In the case of ST, human isolates assorted readily along host lines rather than geographical partitions with the majority of human STs clustering in a larger group of STs of potential porcine origin. Such observations may underscore the ecological importance of poultry and pork reservoirs for SE and ST transmission to humans, respectively. In an examination of the relationship between enzyme diversity and congruence among enzymes, pairwise genetic diversity ranged from 6.5% to 9.7% for SE isolates and, more widely, from 17.5% to 27.4% for ST isolates. Phylogenetic congruence measures singled out XbaI, BlnI, and SfiI as most concordant for SE while XbaI and SfiI were most concordant among ST strains. Thus, these data provide the first proof of principal for concatenated PFGE, when coupled with sufficient enzyme numbers and combinations, as one effective means for predicting geographical and food source reservoirs for human isolates of these two highly prevalent Salmonella serovars. |
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