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Gene expression profiling of diffuse large B-cell lymphoma supervised by CD21 expression
Authors:Miyazaki Kana  Yamaguchi Motoko  Suguro Miyuki  Choi Woonyoung  Ji Yuan  Xiao Lianchun  Zhang Wei  Ogawa Shoko  Katayama Naoyuki  Shiku Hiroshi  Kobayashi Tohru
Affiliation:Department of Haematology and Oncology, Mie University Graduate School of Medicine, Tsu, Japan;, Department of Cancer Biology, The University of Texas M. D. Anderson Cancer Center;, Department of Bioinformatics and Computational Biology, The University of Texas M. D. Anderson Cancer Center;, Department of Biostatistics, The University of Texas M. D. Anderson Cancer Center;, Department of Pathology, Cancer Genomics Core Laboratory, The University of Texas M. D. Anderson Cancer Center, Houston, TX, USA;, and Department of Cancer Vaccine and Immuno-Gene Therapy, Mie University Graduate School of Medicine, Tsu, Japan
Abstract:This study investigated the gene expression profiles of 40 cases of diffuse large B-cell lymphoma (DLBCL) according to CD21 expression, a favourable prognostic factor in DLBCL. Signature genes were analysed by Gene Ontology Tree Machine, and genes concerned with the immune system and related categories were significantly upregulated in CD21 DLBCLs. Of 40 DLBCLs, four were germinal centre B cell-like (GCB) and 36 non-GCB. Of the 36 non-GCB DLBCLs, 14 CD21+ DLBCLs showed significantly better overall survival than the 22 CD21 DLBCLs ( P  =   0·036). Hierarchical cluster analysis of signature genes related to CD21 was applied to previously published data sets, resulting in two groups for each data set, CD21+ type DLBCLs and CD21 type DLBCLs. Survival of CD21+ type DLBCLs was significantly better than that of CD21 type ( P  =   0·006 and P  =   0·004, respectively). In both data sets, CD21+ type DLBCLs predominantly included GCB DLBCLs compared with CD21 type. The top classifier gene of CD21 expression was IGHM, and the five of nine Gene Ontology categories significant in CD21 DLBCLs included IGHM . Immunohistochemical analysis of 216 DLBCLs confirmed that overall survival of surface (s) IgM+ DLBCLs was significantly poorer than that of sIgM- DLBCLs ( P  =   0·013).
Keywords:CD21    diffuse large B-cell lymphoma    gene expression profiling    immunoglobulin M    Gene Ontology
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