Gene expression profiling of diffuse large B-cell lymphoma supervised by CD21 expression |
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Authors: | Miyazaki Kana Yamaguchi Motoko Suguro Miyuki Choi Woonyoung Ji Yuan Xiao Lianchun Zhang Wei Ogawa Shoko Katayama Naoyuki Shiku Hiroshi Kobayashi Tohru |
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Affiliation: | Department of Haematology and Oncology, Mie University Graduate School of Medicine, Tsu, Japan;, Department of Cancer Biology, The University of Texas M. D. Anderson Cancer Center;, Department of Bioinformatics and Computational Biology, The University of Texas M. D. Anderson Cancer Center;, Department of Biostatistics, The University of Texas M. D. Anderson Cancer Center;, Department of Pathology, Cancer Genomics Core Laboratory, The University of Texas M. D. Anderson Cancer Center, Houston, TX, USA;, and Department of Cancer Vaccine and Immuno-Gene Therapy, Mie University Graduate School of Medicine, Tsu, Japan |
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Abstract: | This study investigated the gene expression profiles of 40 cases of diffuse large B-cell lymphoma (DLBCL) according to CD21 expression, a favourable prognostic factor in DLBCL. Signature genes were analysed by Gene Ontology Tree Machine, and genes concerned with the immune system and related categories were significantly upregulated in CD21− DLBCLs. Of 40 DLBCLs, four were germinal centre B cell-like (GCB) and 36 non-GCB. Of the 36 non-GCB DLBCLs, 14 CD21+ DLBCLs showed significantly better overall survival than the 22 CD21− DLBCLs ( P = 0·036). Hierarchical cluster analysis of signature genes related to CD21 was applied to previously published data sets, resulting in two groups for each data set, CD21+ type DLBCLs and CD21− type DLBCLs. Survival of CD21+ type DLBCLs was significantly better than that of CD21– type ( P = 0·006 and P = 0·004, respectively). In both data sets, CD21+ type DLBCLs predominantly included GCB DLBCLs compared with CD21− type. The top classifier gene of CD21 expression was IGHM, and the five of nine Gene Ontology categories significant in CD21– DLBCLs included IGHM . Immunohistochemical analysis of 216 DLBCLs confirmed that overall survival of surface (s) IgM+ DLBCLs was significantly poorer than that of sIgM- DLBCLs ( P = 0·013). |
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Keywords: | CD21 diffuse large B-cell lymphoma gene expression profiling immunoglobulin M Gene Ontology |
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