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1.
Gold surface-bound hyperbranched polyethyleneimine (PEI) films decorated with palladium nanoparticles have been used as efficient catalysts for a series of Suzuki reactions. This thin film-format demonstrated good catalytic efficiency (TON up to 3.4 × 103) and stability. Incorporation into a quartz crystal microbalance (QCM) instrument illustrated the potential for using this approach in lab-on-a-chip-based synthesis applications.

Gold surface-bound hyperbranched polyethyleneimine (PEI) films decorated with palladium nanoparticles have been used as efficient catalysts for a series of Suzuki reactions in a lab-on-a-chip format.

Metal and metal-oxide nanostructures and nanoparticles are often key features in materials used in separation technology, biomedical devices, and catalysis.1,2 Poor mechanical strength and a tendency to aggregate, thus reducing the surface to volume ratio, both limit their use in real-time applications.3,4 To overcome these shortcomings, nanoparticles are often dispersed in a matrix, such as sol–gel, biopolymers, and carbon-based materials without disturbing their innate properties at nano-scale level.5,6 Functionalized polymers have been explored extensively in this regard due to their robustness, low cost, ease of handling, and their amenability for chemical modification.7–9Recently, we have demonstrated the immobilization of hyperbranched polyethyleneimine (PEI) hydrogels on metallic surfaces for use as antifouling surfaces.10 Owing to their hydrogelation properties, polymers of this type have proven useful in therapeutic applications, for e.g. bio-mineralization, and the formation of nanostructures.11,12 PEI is a hyperbranched polymer containing very high densities of primary, secondary and tertiary amines, in a 1 : 2 : 1 ratio, and are capable of coordination with transition metals to form nanostructures.13,14 Recent reports on amine functionalized polymer-supported heterogeneous catalysts for C–C coupling reactions (Table 1-SI) prompted us to deploy PEI as a matrix for synthesizing surface-bound palladium nanoparticles for use as catalysts of C–C coupling reactions. For catalytic applications, a miniaturized microfluidic setup, such as a lab-on-a-chip device, can significantly reduce the consumption of chemicals, catalysts, process time and be beneficial for on-site analysis.15,16In this study, we demonstrate the use of the PEI surface-supported nanoparticles for as a support for catalysis of the Suzuki reaction the possibility for using of these Pd-nanoparticle immobilized PEI-derivatized gold surfaces for performing Suzuki reactions in a microfluidics device. Catalytic surface fabrication (Scheme 1) was performed using gold sputtered quartz surfaces (Au/quartz) that were functionalized with 11-mercaptoundecanoic acid (MuDA), and then activated and derivatization with PEI. The polymer attachment was carried out at high ionic strength (150 mM NaCl), which has been found to enhance the thickness and growth of PEI brush-like structures.10 Optimization of the Pd nanoparticle synthesis procedure was performed by varying incubation times and Pd(OAc)2 concentrations (Table 1-SI). A quartz crystal microbalance (QCM) was used to monitor the amount of Pd deposited on the PEI coated Au/quartz resonators.Open in a separate windowScheme 1Palladium immobilization on polyethyleneimine coated Au/quartz surfaces.The energy dispersive X-ray (EDX) spectrum confirmed the presence of Pd in the PEI film with a distinct band at 2.8 keV (Fig. 1A). XPS spectra of the Pd-bound PEI surfaces revealed the presence of the anticipated proleptic elements (C1s, N1s, O1s, Pd3d and Au4f) (Fig. 1A-SI). Deconvoluted peaks differentiated the amine N of PEI (399.8 eV) from that of the amide N (–*N–C Created by potrace 1.16, written by Peter Selinger 2001-2019 O–, 400.8 eV) (Fig. 1B-SI).17,18 Bands around 335 and 340 eV in the survey spectra correspond to the 3d5/2 and 3d3/2 states of the surface bound Pd.19 The deconvoluted bands at 335.3 and 338.2 demonstrated the presence of Pd(0) and Pd(ii), respectively (Fig. 1B). Importantly, peak integration showed the immobilized Pd to be predominantly in the Pd(0) state, with less than 5% present as Pd(ii).19Open in a separate windowFig. 1(A) Energy dispersive X-ray (EDX) analysis and (B) X-ray photoelectron spectra (XPS) of the palladium nanoparticle immobilized PEI coated Au/quartz surface.RAIR spectra confirmed the presence of the PEI on the gold surface based on the discernible vibrational bands of the –N–H–, –CH– and –CN– bending modes of the adsorbed PEI film (Fig. 2). Subtle differences can be observed in the RAIR spectra of the PEI before and after Pd immobilization. The band corresponding to –N–H– bending mode has been significantly red shifted emphasizing the interaction of the Pd particles with the amine moieties of the PEI film (Fig. 2, inset). This, together with the XPS data, provides evidence for the reduction of Pd(ii) to Pd(0) and its incorporation as nanoparticles into the PEI brush layer.Open in a separate windowFig. 2RAIR spectra of PEI coated Au/quartz surface before and after Pd immobilization.SEM images (Fig. 3) showed uniform long-range coating of the palladium nanoparticles on the PEI immobilized surface (PEI/Pd). The crystallinity of the Pd coated PEI surface was evaluated with powder diffraction measurements which showed characteristic peaks for Pd(111), Pd(200) and Pd(220) with Miller indices of 40, 47.2 and 68.3° (JCPDS No. 98-004-7386), respectively, again confirming the presence of Pd nanoparticles in the (0) oxidation state (curve a, Fig. 2-SI).Open in a separate windowFig. 3Scanning electron micrographs of (A) gold surface, (B) polyethyleneimine (PEI) film and (C) PEI-supported palladium particles fabricated on Au/quartz surfaces.The possibility of using these surfaces for catalysis of the Suzuki reaction was explored using a series of phenylboronic acids and substituted aryl halides (). The amount of catalytic nanopalladium loaded was determined by QCM. Au/quartz surfaces coated with PEI/Pd were immersed in the reaction mixtures at 55 °C for 12 h (Section 1.7-SI). Reactions of aryl halides with a series of arylboronic acids offered the corresponding products in good to excellent yield (). This negligible effect on Pd catalyst poisoning confirms the nature of the catalytic Pd exists predominantly in the (0) oxidation state.20 No biphenyl product has been observed when the Suzuki reaction was performed in presence of unmodified Au/quartz surface (without PEI and Pd).Suzuki cross-coupling reactions of aryl halides with arylboronic acids using PEI/Pd as catalystsa
EntryR1XR2Isolated yieldTON × 103
1HIH93%3.1 × 103
2HBrH95%3.4 × 103
3HI2-CH382%2.2 × 103
4HI3-OCH357%1.5 × 103
5HI4-OCH384%2.4 × 103
6HI2-CN15%0.4 × 103
7HI4-CN95%2.8 × 103
84-CH3BrH88%1.5 × 103
94-OCH3BrH95%1.2 × 103
10HI3-NH2n.r.
11HClH94%10.0 × 103
124-OCH3ClH80%5.3 × 103
134-COCH3ClHn.r.
Open in a separate windowaGeneral procedure: 1.0 mmol of aryl halide, 1.2 mmol of arylboronic acid, 2.0 mmol of K2CO3, in H2O/EtOH. Turnover number TON = mol product/mol Pd. n.r. = no reaction.The Suzuki reaction of phenyl iodide and phenyl boronic acid was also performed using shorter reaction times (6 h and 2 h), with the shorter time providing the product in an acceptable 84% and 78% yield respectively (Tables 2 and 3-SI).To assess the stability of the surfaces and the potential for their reuse, the surfaces were removed from the reaction mixtures and the amount of residual Pd was determined by QCM. XPS measurements revealed no significant change on the nature of the immobilized Pd (335.26 and 340.58 eV) (Fig. 3-SI), and as reflected in the ratio of the Pd3d and Au4f bands measured before (0.45) and after (0.44) the reaction () with peaks for Pd(111), Pd(200) and Pd(220) comparable to those before reaction. The SEM and EDX measurements revealed that the nanopalladium had remained immobilized on the PEI matrix (Fig. 4-SI). The amount of residual Pd was again determined by QCM after use of the surfaces in a series of reactions (
EntryRunConc. of Pd, μgIsolated yieldTON
11st±2.393%4.2 × 103
22nd±2.2289%4.1 × 103
33rd±2.2285%4.0 × 103
44th±2.1580%3.8 × 103
Open in a separate windowaGeneral procedure: 1.0 mmol of aryl halide, 1.2 mmol of arylboronic acid, 2.0 mmol of K2CO3, in H2O/EtOH. TON = mol product/mol.The long-term stability of the catalyst surfaces was studied by storing freshly prepared surfaces in water (Milli-Q grade water, 18.2 MΩ, UHP grade N2) for three months after which catalytic activity was determined (93%).We then explored the use of these surfaces in a lab-on-a-chip format by using them in a QCM instrument fitted with a microfluidics liquid delivery system, where the Suzuki reaction of phenyl iodide and phenylboronic acid was examined under flow injection analysis conditions. The reactants were introduced into the 2 μL volume microreactor using the instrument''s peristaltic pump, and the temperature of the reaction was maintained at 40 °C. Formation of the biphenyl product was confirmed by HPLC analysis of the effluent (Fig. 5-SI).In comparison with other reported heterogeneous catalysts for the Suzuki reaction (Table 4-SI), the Pd/PEI surfaces presented here have significantly lower Pd loadings (>0.001 mol%) though comparable performance, highlighting the role of the PEI matrix for facilitating mass transfer of substrates and products to and from the catalytic centers, and for avoiding aggregation of the Pd.  相似文献   
2.
Acute stroke due to left atrial myxoma     
Subramanian M  Jeganathan M  Suriyanarayanan P  Tilak AR 《Indian pediatrics》1999,36(3):323-324
  相似文献   
3.
Spectrum of small-bowel mucosal abnormalities identified by capsule endoscopy in patients with portal hypertension of varied etiology     
T. S. Chandrasekar  Gokul Bollu Janakan  Viveksandeep Thoguluva Chandrasekar  Raja Yogesh Kalamegam  Sathiamoorthy Suriyanarayanan  Prasad Menta Sanjeevaraya 《Indian journal of gastroenterology》2017,36(1):32-37

Background

Bleeding from small intestinal ectopic varices and persistent anemia caused by portal hypertensive enteropathy (PHE) can be very challenging. Capsule endoscopy (CE) is one of the best noninvasive modalities in identifying such lesions.

Aim

The aims of this study are to study the prevalence of small-bowel changes related to portal hypertension (PHT) and to correlate them with the observations related to the effects of portal hypertension in the esophagus, stomach, and colon.

Methods

Thirty-two patients with various etiologies of PHT with either anemia or gastrointestinal bleed were included along with age- and sex-matched controls without PHT. All patients underwent blood tests, gastroscopy, colonoscopy, and CE. The small-bowel findings by CE were categorized as inflammatory-like and vascular lesions. The small-bowel changes were analyzed to find out any association with various demographic, clinical, and endoscopic variables.

Results

Thirty-one out of 32 patients with PHT (96.8%) had PHE identified by CE. Of them, 31 (96.8%) had inflammatory-like appearance, 11 (34.4%) had vascular lesions, and 2 (6.2%) had small-bowel varices. Inflammatory-like appearance was noted in eight (25%) and angiodysplastic lesions in two (6.2%) controls. Findings compatible with PHE were detected in 96.8% of the patients and 25% of the controls (X 2 =34.72, p=0.000).The presence of PHE was not associated with any of the above-mentioned variables.

Conclusions

Small-bowel mucosal changes were seen in significantly higher number of patients with PHT with anemia.
  相似文献   
4.
A strong nonequilibrium bound for sorting of cross-linkers on growing biopolymers     
Yuqing Qiu  Michael Nguyen  Glen M. Hocky  Aaron R. Dinner  Suriyanarayanan Vaikuntanathan 《Proceedings of the National Academy of Sciences of the United States of America》2021,118(38)
  相似文献   
5.
Influence of heavy metals in Parkinson’s disease: an overview     
Vellingiri  Balachandar  Suriyanarayanan  Atchaya  Abraham  Kripa Susan  Venkatesan  Dhivya  Iyer  Mahalaxmi  Raj  Neethu  Gopalakrishnan  Abilash Valsala 《Journal of neurology》2022,269(11):5798-5811
Journal of Neurology - Parkinson’s disease (PD) is an ageing disorder with deterioration of dopamine neurons which leads to motor complications like tremor, stiffness, slow movement and...  相似文献   
6.
Potential in vitro antioxidant and protective effects of Gymnema montanum H. on alloxan-induced oxidative damage in pancreatic β-cells, HIT-T15     
Kunga Mohan Ramkumar  Chinnasamy Manjula  Lakshmanan Sankar  Sarvajayakesavalu Suriyanarayanan  Palanisamy Rajaguru 《Food and chemical toxicology》2009,47(9):2246-2256
The present study describes the antioxidant activities of ethanol extract from Gymnema montanum (GLEt) which is an endemic plant of India. Antioxidant activity of the GLEt was studied in vitro based on scavenging of hydroxyl radicals, superoxide anions, nitric oxide, hydrogen peroxide, peroxynitrite, reducing power and inhibition of lipid peroxidation estimated in terms of thiobarbituric acid reactive substances (TBARS). Further, we examined its protective effect against alloxan-induced oxidative stress in pancreatic β-cells, HIT-T15 by measuring the free radical generation, malonaldehyde formation and antioxidant levels such as CAT, GPx and GSH. Results showed that G. montanum leaves exhibited significant antioxidant activities measured by various in vitro model systems. The HIT-T15 cell line studies showed the tendency of GLEt to increase antioxidant levels meanwhile decrease the free radical formation and inhibit the lipid peroxidation. The antioxidant activity was found to be well correlated with the phenolic phytochemicals present in the extract. GC–MS analyses revealed the presence of few phenolic compounds in the extract. As this plant has already been demonstrated for a variety of medicinal properties from our laboratory, results of this study suggest that G. montanum is an interesting source for antioxidant compounds and useful for various therapeutic applications.  相似文献   
7.
Double-step invagination technique—A novel approach to retrieve embedded esophageal self-expanding metal stent     
T. S. Chandrasekar  Raja Yogesh Kalamegam  Gokul Bollu Janakan  Sathiamoorthy Suriyanarayanan  Prasad Sanjeevaraya Menta  Viveksandeep Thoguluva Chandrasekar 《Indian journal of gastroenterology》2017,36(5):424-428
Self-expanding metal stenting is an established treatment modality in the management of esophageal growth and stricture. Reactive tissue ingrowth at the uncovered portion of the self-expanding metal stent (SEMS) anchors it in position, preventing its migration. When removal of such an embedded SEMS is clinically indicated, the procedure of endoscopic retrieval is fraught with serious complications. Temporary deployment of a larger fully covered “rescue” SEMS within the embedded SEMS has been reported to be useful in the extraction of the embedded SEMS. When the regression of embedding tissue, is only partially achieved by such “rescue” fully covered SEMS, further extraction of the embedded SEMS can prove to be technically challenging. Here we report two cases where a novel technique, namely the “double-step invagination technique,” was useful in retrieving such embedded esophageal SEMS.  相似文献   
8.
Enantioselective hyperporous molecularly imprinted thin film polymers     
Sofia M. E. Nilsson  Subramanian Suriyanarayanan  Subban Kathiravan  Jari Yli-Kauhaluoma  Tapio Kotiaho  Ian A. Nicholls 《RSC advances》2019,9(58):33653
Significant enantioselective recognition has been achieved through the introduction of long range ordered and highly interconnected 300 nm diameter pores in molecularly imprinted polymer matrices.

Significant enantioselective recognition has been achieved through the introduction of long range ordered and highly interconnected 300 nm diameter pores in molecularly imprinted polymer matrices.

For applications such as heterogenous catalysis, separation and surface-based sensing, enhancing numbers of recognition sites and diffusion to and from these sites are factors critical for improving material performance.1–6 Examples include the incorporation of reactive or ligand-selective functionality in porous inorganic matrices, e.g. zeolites,7,8 super porous silica,9,10 anodized alumina,11,12 and synthetic polymers by chemical functionalization/grafting.13,14Ligand-selective recognition sites can be generated in a polymer matrix by molecular imprinting.15,16 The recognition properties of molecularly imprinted materials have led to them being used in a wide range of applications.17,18 With our long-term objective to develop lab-on-a-chip mini-reactors incorporating catalytic molecularly imprinted polymers (MIPs), where the issues of active site density and mass transfer are critical, we endeavored to explore the possibility of enhancing MIP catalytic functionality through combining the imprinting technique with the use of a sacrificial scaffold. MIPs capable of facilitating chemical reactions have been prepared using a strategy akin to that used in the development of catalytic antibodies,19,20 whereby a transition state analogue (TSA) is used as template during the MIP synthesis. MIPs have been developed for a wide range of chemical transformations,21 such as hydrolysis,22 oxidation,23 [2 + 2] photodimerization,24 cycloaddition25 and asymmetric hydrogenation.26 For many applications, including catalysis, numbers of high affinity sites and mass transfer are issues limiting performance.27,28 The synthesis of imprinted polymers with structural features that facilitate ligand access to recognition sites has been explored using polymer synthesized with sacrificial scaffolds, e.g. silica,29 anodized alumina,30 micelles31 and monodisperse (latex) polystyrene (PS) beads.32,33 These strategies have been successfully used to enhance the performance of surface-based sensing techniques, e.g. quartz crystal microbalance (QCM),32 and electrochemical methods.12For this study we selected a previously described MIP capable of catalyzing a transamination reaction,34 the physiologically important synthesis of an α-amino acid from the corresponding α-ketocarboxylic acid, in this case the reaction of phenylpyruvic acid and pyridoxamine to yield phenylalanine and pyridoxal34 (Scheme S1). The enantiomers of a TSA for this reaction were used as templates in the MIP synthesis, Fig. 1. Features of this polymer system include its enantioselectivity, whereby the choice of template chirality gave the resultant methacrylic acid (MAA)–ethylene glycol dimethacrylate (EGDMA) copolymer with the corresponding enantioselectivity, and catalytic functionality in aqueous media.Open in a separate windowFig. 1Structures of the (A) l- and (B) d-transition state analogues for the reaction of phenylpyruvic acid and pyridoxamine to yield phenylalanine and pyridoxal, as first proposed by Winkler et al.35The regular highly porous structures previously prepared using sacrificial self-assembled monodisperse polystyrene beads were perceived to offer good potential for enhancing diffusion and thus template binding site accessibility.32,33 However, the solubility of the polystyrene beads in the porogen previously used in the MIP synthesis, chloroform, necessitated an alternative solvent, that while not dissolving the polystyrene beads was still capable of solubilizing the polymerization reaction mixture components. The screening of solvents with dielectric constants below that of chloroform (4.8 at 293 K), led to the identification of n-heptane (1.9 at 293 K) as a solvent that could solubilize polymerization reaction components without increasing competition for electrostatic interactions between template and monomer and without dissolving the polystyrene beads, which are normally removed by dissolving in toluene (2.4 at 293 K).To ascertain the impact of the sacrificial scaffold on imprinted polymer recognition characteristics in a QCM microfluidics device, a series of polymer films was prepared on SiO2@Au-coated quartz crystal resonators (≈0.12 cm2 in area), Fig. 2. The investigated polymer systems were either prepared in the presence of n-heptane as solvent or without any solvent, with and without the presence of self-assembled monodisperse 300 nm PS beads, and either in the presence, or absence of the l-TSA template, The self-assembled beads showed long-range order, as seen in scanning electron microscopy (SEM) studies, Fig. 3D and S1. Interestingly, our initial studies to establish the chemistry used microscope slides (≈15 cm2 in area), highlighting the potential for producing these materials in larger formats.Open in a separate windowFig. 2Schematic representation of the strategy used for preparing hyperporous molecularly imprinted polymer films using sacrificial polystyrene (latex) beads on QCM resonators.Poly(MAA-co-EGDMA) systems synthesized and analyzed in this study
Polymer systemTemplateSacrificial scaffoldSolvent
P1PS beads n-Heptane
P2 n-Heptane
P3PS beads
P4 l-TSAPS beads n-Heptane
P5 l-TSA n-Heptane
P6 l-TSAPS beads
P7 d-TSAPS beads n-Heptane
P8
P9 l-TSA
Open in a separate windowOpen in a separate windowFig. 3SEM images of l-TSA imprinted polymer systems prepared in the presence and absence of polystyrene beads and n-heptane solvent, respectively. (A) P4, (B) P5 and (C) P6. (D) is the SEM image of self-assembled 300 nm diameter polystyrene beads drop coated on SiO2@Au-coated quartz crystal resonators.SEM studies of the polymers showed the presence of long-range ordered interconnected networks of pores (Fig. 3A and C) strongly reflecting the layers of sacrificial self-assembled latex beads (Fig. S2 and S3). Importantly, this indicates that the polymer bead assemblies remain largely intact throughout the polymerization process. Polymer film (P5) prepared in the absence of beads was devoid of macroporous structure (Fig. 3B). Upon comparison of the SEM images of P4, synthesized using n-heptane and sacrificial bead scaffold, and P6, using no porogen, the later produced a somewhat more regularly structured polymer network (S2B vs. S3B). This was concluded to arise from the more intimate interaction of monomers with the polystyrene beads. Studies (data not presented) using 100 nm diameter beads produced polymer films though with significantly less ordered pores.Importantly, Fourier-transform infrared spectroscopy (FTIR) for the polymer films prepared in the absence and presence of sacrificial bead layers display similar spectral properties (Fig. S4), in particular bands νC Created by potrace 1.16, written by Peter Selinger 2001-2019 O (1710 cm−1), δ(C–H) (1455 cm−1), νC–O (1145 and 1250 cm−1) and ρC–H (750 and 900 cm−1) arising from vibrational modes. This data also indicate that the presence and removal of the polymer beads has no apparent influence on the chemical composition of the resultant MIP films. Support for the effective removal of the beads is seen, where the strong bands at 696, 752, 1216, 1449, 1492, 1602, 2922 and 3025 cm−1, as well as overtones around 1800–2000 cm−1, arising from the polystyrene beads effectively disappear after treatment with toluene (Fig. S4A). The thickness of the films, 26–100 μm, was controlled by regulating the amounts of the polymerization mixture components used, including where relevant the polystyrene beads, and calculated as described in the ESI (S9).The recognition properties of the polymer-coated resonators were initially explored by flow injection analysis (FIA) using a QCM, and a 1 : 1 solution of methanol–aqueous sodium acetate (0.1 M, pH 7.0) as mobile phase, by determining the sensitivities of the polymer films to the templates; the l-TSA template and its enantiomer, d-TSA, Fig. 3 and S5. Comparison of the polymer films prepared in the presence of the sacrificial bead scaffold and either in the absence or presence of the l-TSA imprinted in n-heptane, P1 and P4, respectively, showed a clear selectivity for the l-TSA over its enantiomer in the case of P4. No significant enantioselectivity was observed in the case of the non-imprinted P1, with small observed differences in calculated sensitivities being within experimental error for these studies, ±0.04 Hz mM−1. The importance of the sacrificial bead scaffold, and even the presence of porogen, on the capacity and enantioselectivity of the polymers was evident upon comparison with the l-TSA imprinted and non-imprinted polymers prepared in the absence of the bead scaffold, P2 and P5, or the porogen, P3 and P6. In these cases, no significant template enantioselectivity was observed, which highlighted the importance of the collective impact of the porogen and sacrificial bead scaffold-induced interconnected pores on access to template-selective binding sites. To confirm this hypothesis, a polymer film was prepared using the l-TSA as template with n-heptane as porogen and the sacrificial bead scaffold, P7. This polymer demonstrated a selectivity for the d-TSA over l-TSA – the opposite to that seen for P4, thus substantiating the impact of the combination of beads and porogen on template selectivity. Polymer films prepared in the absence of both porogen and sacrificial beads (zero polymers P8 and P9) demonstrated low levels of binding and sensitivity for the TSAs compared to system P4, reflecting the anticipated lack of accessible sites.We then proceeded to investigate the broader selectivity of the polymer films towards the reactants and products for this transamination reaction (Scheme S1). The TSAs demonstrated superior binding in all cases. This was attributed to their greater number of functional groups and presence of two aromatic rings, which are able to contribute to both the TSA-selective and non-specific binding through a combination of electrostatic and hydrophobic binding interactions, Fig. 4 and S5. In all cases, the sensitivities of the other analytes (Scheme S1) were lower, reflecting less selective binding. This data is in general accordance with the selectivity profile of the previously reported bulk polymers synthesized using chloroform.34 It was interesting to note that the phenylpyruvic acid was better recognized by the hyperporous TSA-imprinted polymers, P4 and P7, than on the other polymers. This suggests that it accesses the binding domains derived from the TSA''s aromatic rings, a process favorable in the aqueous rebinding media.Open in a separate windowFig. 4Histogram of sensitivity of the polymer systems (P1, P4 and P7 from 相似文献   
9.
Oral microbiome-systemic link studies: perspectives on current limitations and future artificial intelligence-based approaches     
Chaminda Jayampath Seneviratne  Preethi Balan  Tanujaa Suriyanarayanan  Meiyappan Lakshmanan  Dong-Yup Lee  Mina Rho 《Critical reviews in microbiology》2020,46(3):288-299
Abstract

In the past decade, there has been a tremendous increase in studies on the link between oral microbiome and systemic diseases. However, variations in study design and confounding variables across studies often lead to inconsistent observations. In this narrative review, we have discussed the potential influence of study design and confounding variables on the current sequencing-based oral microbiome-systemic disease link studies. The current limitations of oral microbiome-systemic link studies on type 2 diabetes mellitus, rheumatoid arthritis, pregnancy, atherosclerosis, and pancreatic cancer are discussed in this review, followed by our perspective on how artificial intelligence (AI), particularly machine learning and deep learning approaches, can be employed for predicting systemic disease and host metadata from the oral microbiome. The application of AI for predicting systemic disease as well as host metadata requires the establishment of a global database repository with microbiome sequences and annotated host metadata. However, this task requires collective efforts from researchers working in the field of oral microbiome to establish more comprehensive datasets with appropriate host metadata. Development of AI-based models by incorporating consistent host metadata will allow prediction of systemic diseases with higher accuracies, bringing considerable clinical benefits.  相似文献   
10.
Influence of self‐assembling peptide nanofibre scaffolds on retinal differentiation potential of stem/progenitor cells derived from ciliary pigment epithelial cells          下载免费PDF全文
Saranya Suriyanarayanan  Subramanian Krishnakumar 《Journal of tissue engineering and regenerative medicine》2017,11(2):509-518
Aim of the study was to investigate the influence of the self‐assembling peptide nanofibre scaffolds (SAPNs) on the growth, proliferation and retinal neuronal differentiation of the stem/progenitor cells (SCs) derived from the ciliary pigment epithelium (CPE) of human cadaveric eye. Here SAPNs (RADA16‐I, PM), which is well described in previous studies, commercially available and xeno‐free. The CPE cells isolated were cultured in DMEM/F12 supplemented with N2 and growth factors such as basic fibroblast growth factor and epidermal growth factor, encapsulated in the scaffolds. The entrapped SCs actively expanded and formed clone‐like clusters in the scaffolds. Many cells in the cluster were proliferating, as revealed by 5‐bromo‐2‐deoxyuridine uptake and could be maintained for up to 6 days and expressed neural progenitor markers such as β‐III tubulin, Nestin, Pax6 and Musashi1. Upon differentiation of these cells in conditioned medium, the cells exhibited retinal neuronal markers such as s‐Opsin, rhodopsin and Recoverin. The RT2 profiler polymerase chain reaction array experiments showed selective gene expression, possibly involved in neural stem/progenitor cell adhesion and differentiation. These findings suggest the suitability of the three‐dimensional culture system for the proliferation and maintenance of CPE stem/progenitor cells (CPE‐NS) and for possible use in ex vivo studies of small molecules, drug deliveries for retinal diseases and for use in combination with directed stem/progenitor cell differentiation. and ultimately for tissue replacement therapies. Copyright © 2014 John Wiley & Sons, Ltd.  相似文献   
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