DesK is a bacterial thermosensor protein involved in maintaining membrane fluidity in response to changes in environmental temperature. Most likely, the protein is activated by changes in membrane thickness, but the molecular mechanism of sensing and signaling is still poorly understood. Here we aimed to elucidate the mode of action of DesK by studying the so-called “minimal sensor DesK” (MS-DesK), in which sensing and signaling are captured in a single transmembrane segment. This simplified version of the sensor allows investigation of membrane thickness-dependent protein–lipid interactions simply by using synthetic peptides, corresponding to the membrane-spanning parts of functional and nonfunctional mutants of MS-DesK incorporated in lipid bilayers with varying thicknesses. The lipid-dependent behavior of the peptides was investigated by circular dichroism, tryptophan fluorescence, and molecular modeling. These experiments were complemented with in vivo functional studies on MS-DesK mutants. Based on the results, we constructed a model that suggests a new mechanism for sensing in which the protein is present as a dimer and responds to an increase in bilayer thickness by membrane incorporation of a C-terminal hydrophilic motif. This results in exposure of three serines on the same side of the transmembrane helices of MS-DesK, triggering a switching of the dimerization interface to allow the formation of a serine zipper. The final result is activation of the kinase state of MS-DesK.All organisms have to be able to rapidly adapt to a vast variety of external stimuli to survive. In bacteria, two-component signal transduction systems are some of the most abundant mechanisms for sensing and adapting to changes in the extracellular environment. These systems mediate responses in chemotaxis and phototaxis, and regulate feedback to changes in osmolarity, redox state, and temperature (
1,
2). However, despite the evident importance of two-component systems for bacterial survival, the molecular mechanisms of signal transduction via these systems have barely begun to be untangled.The DesKR system is a two-component system first identified in the soil bacterium
Bacillus subtilis (
3). Together with other regulatory systems, it is involved in maintaining membrane fluidity when the environmental temperature changes. The DesKR system works as follows. The actual thermosensor—i.e., the protein that senses the temperature change—is DesK. This protein consists of five transmembrane helices and an intracellular catalytic domain (DesKC) and is believed to function as a dimer (
2,
4). In response to decreased environmental temperature, DesKC phosphorylates the response regulator DesR, which in turn controls the expression levels of the effector enzyme, a desaturase. This desaturase is inserted into the membrane, where it can introduce double bonds into preexisting lipids, allowing the recovery of membrane fluidity at this lower temperature (
3).In the present study, we focused on the first step of the signaling pathway, examining how the sensor is able to sense and transmit a temperature-dependent signal. This challenge was recently simplified by the discovery that both the sensing and the signal transduction properties of the membrane-spanning part of DesK can be captured into a single transmembrane segment by fusing the N-terminal part of the first transmembrane segment to the C-terminal part of the fifth transmembrane segment (
5). The resulting protein is called the minimal sensor DesK (MS-DesK).Importantly, MS-DesK shows a temperature-dependent switch in activity comparable to the full-length DesK not only in vivo, but also when reconstituted in protein-free lipid bilayers made from bacterial lipids (
5). Therefore, no other membrane proteins are involved in sensing or signal transduction. Furthermore, the activity of the catalytic domain DesKC itself, is not temperature-sensitive (
5,
6), and thus it must be the transmembrane segment of MS-DesK that somehow reacts to changes in temperature, most likely by sensing corresponding changes in the physical properties of the lipids.Which properties of the membrane could be sensed by DesK and MS-DesK? On a decrease in environmental temperature, membrane lipids become more ordered, and consequently the membrane becomes thicker (
7). Some evidence suggests that such changes in membrane thickness may be a key factor in the regulation of DesK sensing and signaling. First, an MS-DesK length mutant (4V) containing four extra valines in the C-terminal region of its transmembrane segment was found to be inactive and to remain locked in the phosphatase state on a decrease in temperature (
5). Second, reconstitution studies showed increasing activity of both DesK and MS-DesK with increasing acyl chain length of the lipids in which the protein is reconstituted (
5,
8). Third, increased incorporation of long-chain fatty acids into the membrane lipids was found to stimulate kinase activity of DesK in vivo, whereas increased levels of short-chain fatty acids result in loss of activity (
9).How can membrane thickness regulate the activity of DesK? It has been shown that the N terminus of MS-DesK at the exoplasmic side of the membrane contains a motif that may render the protein sensitive to membrane thickness and interfacial hydration. This motif contains two hydrophilic amino acids, K10 and N12, that are essential for activity (
5) and that presumably are located within the transmembrane region just below the lipid–water interface. Because their side chains can snorkel to the hydrophilic membrane–water interface, these amino acids were proposed to act as a buoy, stabilizing the position of the transmembrane segment. For this reason, this has been called the sunken-buoy (SB) motif (
5). In addition to the SB motif, a charged linker region at the intracellular membrane–water interface was found to be important for activity (
10). It has been proposed that both motifs act together as a molecular gauge that senses membrane thickness and thereby regulates the switching of activity of the intracellular catalytic domain of DesK (
10). The molecular details of the mode of action of this molecular gauge have remained elusive, however.Because the activity of MS-DesK is most likely regulated by direct interactions of its single transmembrane segment with surrounding lipids, as discussed above, this system is ideally suited for studies on relatively simple model membranes. In such model systems, the biological complexity of the host membrane is reduced to allow for systematic studies. Here, to gain insight into the molecular mode of action of the sensor, we studied the behavior of peptides mimicking the membrane-spanning parts of a functional mutant and a nonfunctional mutant of MS-DesK in synthetic lipid bilayers by spectroscopic techniques and molecular modeling. Combined with in vivo functional studies on MS-DesK mutants and cross-linking experiments, our results lead to a new model of thermosensing in which changes in bilayer thickness trigger a switch between distinct dimerization interfaces within the membrane, resulting in activation of the sensor.
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