Principles and applications of diffusion-weighted imaging in cancer detection, staging, and treatment follow-up

Diffusion-weighted imaging relies on the detection of the random microscopic motion of free water molecules known as Brownian movement. With the development of new magnetic resonance (MR) imaging technologies and stronger diffusion gradients, recent applications of diffusion-weighted imaging in whole-body imaging have attracted considerable attention, especially in the field of oncology. Diffusion-weighted imaging is being established as a pivotal aspect of MR imaging in the evaluation of specific organs, including the breast, liver, kidney, and those in the pelvis. When used in conjunction with apparent diffusion coefficient mapping, diffusion-weighted imaging provides information about the functional environment of water in tissues, thereby augmenting the morphologic information provided by conventional MR imaging. Detected changes include shifts of water from extracellular to intracellular spaces, restriction of cellular membrane permeability, increased cellular density, and disruption of cellular membrane depolarization. These findings are commonly associated with malignancies; therefore, diffusion-weighted imaging has many applications in oncologic imaging and can aid in tumor detection and characterization and in the prediction and assessment of response to therapy.     

H7 avian influenza virus vaccines protect chickens against challenge with antigenically diverse isolates

Vaccination has been a critical tool in the control of some avian influenza viruses (AIV) and has been used routinely in Pakistan to help control sporadic outbreaks of highly pathogenic (HP) H7 AIV since 1995. During that time, several AIV isolates were utilized as inactivated vaccines with varying degrees of success. In order to evaluate which H7 AIV strains may serve as optimal vaccines for diverse H7 AIVs from Pakistan we conducted vaccination-challenge studies with five H7 vaccines against challenge with two HPAIVs: A/chicken/Murree/NARC-1/1995 H7N3 and A/chicken/Karachi/SPVC-4/2004 H7N3. To further characterize the isolates antigenic cartography was used to visually demonstrate the antigenic relationships among the isolates. All vaccines provided similar protection against mortality, morbidity and shedding of challenge virus from the respiratory tract. However, some minor (not statistically significant) differences were observed and correlated with antibody levels induced by the vaccine prior to challenge.     

Persistence of an activating N-RAS oncogene mutation in clonogenic progenitor cells from an acute myeloid leukaemia patient in remission

Summary A patient with acute myeloid leukaemia (AML) with an activating N- RAS oncogene mutation was studied in a haemopoietic clonogenic progenitor cell assay. Individual colonies and clusters were analysed by polymerase chain reaction and oligonucleotide hybridization for the original mutation. The mutation was detected in a majority of leukaemic clusters, but also in almost half of the differentiated colonies. After chemotherapy the patient entered clinical remission. However, the mutation could still be detected in the bone marrow. Only differentiated colonies and no leukaemic clusters were grown from the remission bone marrow, but the original mutation was still detectable in almost half of the colonies.     

Genomic Analysis of Shiga Toxin-Producing E. coli O157 Cattle and Clinical Isolates from Alberta,Canada

Shiga toxin (stx) is the principal virulence factor of the foodborne pathogen, Shiga toxin-producing Escherichia coli (STEC) O157:H7 and is associated with various lambdoid bacterio (phages). A comparative genomic analysis was performed on STEC O157 isolates from cattle (n = 125) and clinical (n = 127) samples to characterize virulence genes, stx-phage insertion sites and antimicrobial resistance genes that may segregate strains circulating in the same geographic region. In silico analyses revealed that O157 isolates harboured the toxin subtypes stx1a and stx2a. Most cattle (76.0%) and clinical (76.4%) isolates carried the virulence gene combination of stx1, stx2, eae and hlyA. Characterization of stx1 and stx2-carrying phages in assembled contigs revealed that they were associated with mlrA and wrbA insertion sites, respectively. In cattle isolates, mlrA and wrbA insertion sites were occupied more often (77% and 79% isolates respectively) than in clinical isolates (38% and 1.6% isolates, respectively). Profiling of antimicrobial resistance genes (ARGs) in the assembled contigs revealed that 8.8% of cattle (11/125) and 8.7% of clinical (11/127) isolates harboured ARGs. Eight antimicrobial resistance genes cassettes (ARCs) were identified in 14 isolates (cattle, n = 8 and clinical, n = 6) with streptomycin (aadA1, aadA2, ant(3’’)-Ia and aph(3’’)-Ib) being the most prevalent gene in ARCs. The profound disparity between the cattle and clinical strains in occupancy of the wrbA locus suggests that this trait may serve to differentiate cattle from human clinical STEC O157:H7. These findings are important for stx screening and stx-phage insertion site genotyping as well as monitoring ARGs in isolates from cattle and clinical samples.     

Magnetic phase transition from paramagnetic in Nb2AlC-MAX to superconductivity-like diamagnetic in Nb2C-MXene: an experimental and computational analysis

Transition metal carbides (TMCs) have recently emerged as competent members among the family of two-dimensional (2D) materials, owing to their promising applications. There are many promising applications of MXenes; however, their magnetic properties lack a wide margin, both experimentally as well as theoretically, which needs to be investigated for potential use in spintronics. In this study, we carried out a comprehensive etching process via selective extraction of Al layers from Nb₂AlC-MAX using a wet electrochemical route under well-optimized conditions to obtain fine 2D-Nb₂C MXene sheets. Structural analysis using X-ray diffraction (XRD) confirms the effective removal of Al followed by confirmation of a 2D layered structure from morphological analysis using scanning electron microscopy (SEM). Zero-field-cooled (ZFC) and field-cooled (FC) measurements of MAX and MXene at different field strengths were performed using a superconducting quantum interference device (SQUID). Magnetic measurements reveal the paramagnetic nature of Nb₂AlC-MAX measured under 5 mT; however, this changes to a clear superconductor-like diamagnetic behavior with a shift of the magnetization from positive to negative values at low temperatures when measured under 5 mT and 10 mT for Nb₂C MXene. The diamagnetism, however, is changed to paramagnetism at 100 mT, which shows the existence of critical fields known typically for a type-II superconductor. To gain an insight into this unusual behavior in MXene, density functional theory (DFT) first-principles calculation was also performed in Wein2K software using spin-polarized generalized gradient approximation (sp-GGA). The magnetic moment of the compound is calculated to be negative, which corresponds well with the experimental finding and suggests that the negative magnetic moment originated from the d-orbital of Nb₂C. The present report provides a pathway to deeply understanding the existence of superconductivity-like diamagnetic behavior in Nb₂C MXene, which is useful for future magnetic applications.

Transition metal carbides (TMCs) have recently emerged as competent members among the family of two-dimensional (2D) materials, owing to their promising applications.

In two-dimensional (2D) materials, magnetism at the nanoscale is at the forefront of many cutting-edge technological applications, such as spintronic devices. Naguib et al. have synthesized a new class of two-dimensional materials, known as MXenes (M_nX_n+1), discovered in 2011, giving a possibility of magnetism in such 2D materials and their promising uses in spintronic devices.¹ These 2D layer structured early transition metal carbides and/or nitrides are known as MXenes, so named to indicate their structural similarities with graphene.² MXenes are derived from 3D MAX phases (space group P6₃/mmc) in which “M” is an early transition metal, e.g., Ti, Ta, V, etc.; “A” is mainly a group 13 or group 14 element (group III-A or IV-A), e.g., Si, Al; “X” is a carbide, nitride or can be both; and n = 1, 2, 3 represents the number of layers, forming 211, 312 and 413 phases.^3–5 Over the past decade, this new material has gained enormous attention, thus developing an entirely new research field to disclose the properties of the 2D state of this material. The materials in the 2D regime own a cluster of astonishing physical properties as compared to the 3D nature, but intrinsic two-dimensional magnetism has proved to be challenging. As 2D semiconductors have revamped the field of electronics, similarly, magnetism in 2D materials could remodel spintronic devices that can employ a spin degree of freedom.^6,7Nb₂C MXene was first synthesized by Naguib et al., but they just reported its electrochemical activity as a promising electrode material.⁴ Further work has been reported in Nb₂C with various biomedical applications, energy storage, supercapacitors, and nanoelectronics.^9–19 As far as the magnetism in such 2D MXenes is concerned, it remains less investigated, and this research void needs to be filled. Recently, Babar et al. reported the observation of superconductivity in as-prepared powdered Nb₂C for the first time, with the highest onset transition temperature T_c,onset = 12.5 K among the MXene family. However, the authors did not discuss the magnetic nature of the parent Nb₂AlC MAX itself and did not reason for the presence of unusual magnetic effects in MXene.⁸ MXenes are favorable members of 2D magnetism, and different magnetic natures are computationally predicted in various carbide and nitride MXenes.^7,20 The existence of novel room-temperature ferromagnetic order in doped MXene and the coexistence of different magnetic phases in MXene, along with experimental evidence, indicate its potential of hosting diverse magnetic natures.^21,22 Considerable research has been focused on these 2D structures due to their importance and favorable applications, such as spintronics. MXene could provide a vast platform for exploring the magnetic properties and is one of the best candidates that can host superconductivity as compared to other members of the 2D family. Experimental studies are generally dependent upon numerous variables, thus affecting the research pace. However, density functional theory-based first principles calculation and theoretical simulations are a successful way to examine and foresee the properties of low-dimensional materials. This provoked us to theoretically explore superconductivity in Nb₂C and their validation through superconductivity measurements of experimentally synthesized Nb₂C MXene. In this work, we report a systematic etching mechanism of Nb₂C MXene to obtain fine 2D sheets via a chemical etching route using hydrofluoric (HF) acid. Structural and morphological studies using the X-ray diffraction technique (XRD), scanning electron microscopy (SEM) and elemental analysis by energy-dispersive X-ray spectroscopy (EDX) show the effective removal of Al from the parent 3D-Nb₂AlC MAX, thus revealing an accordion-like sheet structure. Optical analysis indicates a significant reduction in bandgap after chemical etching. Magnetic properties were carried out to observe the signatures of superconductivity (a perfect diamagnetic state, negative magnetic moment) and its magnetic nature at room temperature. To study the magnetic nature of as-prepared powder-form Nb₂C, density functional theory (DFT) first principles calculation was carried out through Wein2K using spin-polarized generalized gradient approximation (sp-GGA). The magnetic moment of the compound is calculated to be −0.00485, which although but small is important, as the value is negative, which is an indication of the presence of diamagnetism in Nb₂C. Here, the detailed chemical etching process, magnetic properties of Nb₂AlC MAX and its effect on magnetic phase of Nb₂C MXene, and the density functional theory calculation are reported, which were not discussed by Babar et al. in ref. 8.     

Potential of adenovirus and baculovirus vectors for the delivery of shRNA against morbilliviruses

Morbilliviruses are important pathogens of humans, ruminants, carnivores and marine mammals. Although good vaccines inducing long-term immunity are available, recurrent outbreaks of measles, canine distemper and peste des petits ruminants (PPR) are observed. In control strategies, antivirals thus could be useful to confine virus spread and application of interfering RNAs is a promising approach, provided they can be delivered efficiently into the host cells. We have constructed recombinant adenovirus and baculovirus vectors expressing short hairpin RNAs (shRNAs) against the PPR virus (PPRV) and compared them in vitro. It was found that both recombinant viruses inhibited PPRV replication with the baculovirus vector, which inhibited generation of infectious progeny by more than 2 log10 and the nucleoprotein expression of PPRV by 73%, being the more efficient. The results show that baculoviral shRNA-expressing vectors have the potential for therapeutic use against morbillivirus infections.     

Bridging two translation gaps: a new informatics research agenda for telemonitoring of chronic disease

Objective

To propose a research agenda that addresses technological and other knowledge gaps in developing telemonitoring solutions for patients with chronic diseases, with particular focus on detecting deterioration early enough to intervene effectively.

Design

A mixed methods approach incorporating literature review, key informant, and focus group interviews to gain an in-depth, multidisciplinary understanding of current approaches, and a roadmapping process to synthesise a research agenda.

Results

Counter to intuition, the research agenda for early detection of deterioration in patients with chronic diseases is not only primarily about advances in sensor technology but also much more about the problems of clinical specification, translation, and interfacing. The ultimate aim of telemonitoring is not fully agreed between the actors (patients, clinicians, technologists, and service providers). This leads to unresolved issues such as: (1) How are sensors used by patients as part of daily routines? (2) What are the indicators of early deterioration and how might they be used to trigger alerts? (3) How should alerts lead to appropriate levels of responses across different agencies and sectors?

Conclusion

Attempts to use telemonitoring to improve the care of patients with chronic diseases over the last two decades have so far failed to lead to systems that are embedded in routine clinical practice. Attempts at implementation have paid insufficient attention to understanding patient and clinical needs and the complex dynamics and accountabilities that arise at the level of service models. A suggested way ahead is to co-design technology and services collaboratively with all stakeholders.