Mutation of POC1B in a Severe Syndromic Retinal Ciliopathy

We describe a consanguineous Iraqi family with Leber congenital amaurosis (LCA), Joubert syndrome (JBTS), and polycystic kidney disease (PKD). Targeted next‐generation sequencing for excluding mutations in known LCA and JBTS genes, homozygosity mapping, and whole‐exome sequencing identified a homozygous missense variant, c.317G>C (p.Arg106Pro), in POC1B, a gene essential for ciliogenesis, basal body, and centrosome integrity. In silico modeling suggested a requirement of p.Arg106 for the formation of the third WD40 repeat and a protein interaction interface. In human and mouse retina, POC1B localized to the basal body and centriole adjacent to the connecting cilium of photoreceptors and in synapses of the outer plexiform layer. Knockdown of Poc1b in zebrafish caused cystic kidneys and retinal degeneration with shortened and reduced photoreceptor connecting cilia, compatible with the human syndromic ciliopathy. A recent study describes homozygosity for p.Arg106Pro_POC1B in a family with nonsyndromic cone‐rod dystrophy. The phenotype associated with homozygous p.Arg106Pro_POC1B may thus be highly variable, analogous to homozygous p.Leu710Ser in WDR19 causing either isolated retinitis pigmentosa or Jeune syndrome. Our study indicates that POC1B is required for retinal integrity, and we propose POC1B mutations as a probable cause for JBTS with severe PKD.     

Enhanced HIV-1 neutralization by antibody heteroligation

Passive transfer of broadly neutralizing human antibodies against HIV-1 protects macaques against infection. However, HIV-1 uses several strategies to escape antibody neutralization, including mutation of the gp160 viral surface spike, a glycan shield to block antibody access to the spike, and expression of a limited number of viral surface spikes, which interferes with bivalent antibody binding. The latter is thought to decrease antibody apparent affinity or avidity, thereby interfering with neutralizing activity. To test the idea that increasing apparent affinity might enhance neutralizing activity, we engineered bispecific anti-HIV-1 antibodies (BiAbs) that can bind bivalently by virtue of one scFv arm that binds to gp120 and a second arm to the gp41 subunit of gp160. The individual arms of the BiAbs preserved the binding specificities of the original anti-HIV IgG antibodies and together bound simultaneously to gp120 and gp41. Heterotypic bivalent binding enhanced neutralization compared with the parental antibodies. We conclude that antibody recognition and viral neutralization of HIV can be improved by heteroligation.     

Solvent-assisted linker exchange as a tool for the design of mixed-linker MIL-140D structured MOFs for highly selective detection of gaseous H2S

A MIL-140D-sdc framework has been used as a highly stable backbone for the introduction of 4,4′-azobenzene dicarboxylic acid (H₂abdc) via solvent-assisted ligand exchange (SALE). The implemented azo groups can serve as coordination sites for copper ions. These can exchange ligands with different gases, but show a high selectivity against H₂S, which makes this material promising for potential sensor applications.

Solvent-assisted linker exchange was used as tool to modify a MIL-140D-sdc (sdc = 4,4′-stilbenedicarboxylate) MOF with azostilbene dicarboxylic acid. The azo groups can act as coordination sites for copper ions and allow the use of this material as sensor for gaseous H₂S.

Hydrogen sulfide (H₂S) is a toxic gas with harmful effects on human health and is responsible for different diseases, like liver cirrhosis.¹ At concentrations above just 50 ppm, irritation of the respiratory tract can occur.² For the detection of H₂S, chemical sensors containing semiconducting metal oxides are widely used. Although these exhibit high sensitivities, they also have some disadvantages due to their high working temperatures and a lack of selectivity.³Especially in the areas of selectivity and cross-sensitivity, metal–organic frameworks (MOFs) can overcome the limits that plague many other sensors. Due to their modular design built up by metal nodes and organic linker molecules, they can be tailored to the desired application.⁴ Functionalities attached to the linkers of MOFs are often required in order to be able to use these materials for sensor applications.⁵Many MOFs are described for the detection of H₂S. Apart from one example of a capacitive sensor,⁶ the detection is almost always based on a fluorescence turn-on probe. Here functional groups of the MOF (–N₃ or –NO₂) are reduced by H₂S to amino groups resulting in turning on the fluorescence of the linker. However, in these investigations the MOFs are dispersed in buffered aqueous or ethanolic solutions.⁷ In addition, no gaseous H₂S is used, but sulfides-containing sodium salts such as Na₂S, that dissociate in solution to HS⁻, which is required for the reaction.⁸ To the best of our knowledge, only one example is described in literature where a MOF is used for a luminescent-based detection of gaseous H₂S.⁹Azo components have the special ability to coordinate metal ions. This has already been investigated in detail with individual azo compounds and metal salts of palladium¹⁰ or copper.^11,12 Until now, a transfer of this reaction behaviour into a MOF is rare and not yet described for copper species but for palladium species.¹³ Nevertheless, these copper-azo complexes can be used for the colourimetric detection of both aqueous HS⁻ and gaseous H₂S.¹⁴ The sensor principle is based on a displacement reaction. The coordinated copper ions react with gaseous H₂S to CuS as already shown with CuO-loaded metal oxide semiconductors.¹⁵ Considering copper-based MOFs such as the HKUST-1, they show a lack of stability under normal conditions, making them unsuitable for use in sensor technology. Nevertheless, a reaction between H₂S and the metal centres is still possible, however, this leads to the formation of CuS and the complete breakdown of the framework.¹⁶With the UiO family, a isoreticular series of Zr-based MOFs was reported.¹⁷ Particularly, the UiO-66 and its derivatives exhibit an exceptional thermal and chemical stability. By the use of the same precursors but higher synthesis temperatures, Guillerm et al. presented highly stable Zr-MOFs, the so-called MIL-140 series.¹⁸ In MIL-140 frameworks, there are one-dimensional chains of zirconium oxide (c.n. 7) as inorganic building units (IBUs) orientated parallel to the c-axis of the structures. Each chain is connected via linker molecules to six other chains resulting in a one-dimensional pore system (see ESI Fig. S1^†). Especially those MOFs with longer linker molecules exhibit an improved stability in comparison to their UiO analogues. This can be explained with the different structures of these compounds.^18,19By using post-synthetic modifications (PSM) further functionalized MOF materials can be obtained.²⁰ In case of exchanging an unfunctionalized linker molecule with a functionalized, the solvent-assisted ligand exchange (SALE) is an attractive possibility to adjust the properties of an already synthesized MOF and enhance the tunability.²¹We recently reported a low-temperature synthesis of MIL-140 frameworks and a new MIL-140-structured MOF, based on 4,4′-stilbenedicarboxylic acid (H₂sdc), the MIL-140D-sdc (see Table S1 and ESI Fig. S1^†).²² This MOF shows a high thermal and chemical stability which can be compared to the former reported MIL-140 MOFs.¹⁸ A synthesis for an azo-based MIL-140D-H with H₂abdc as linker is also described in literature (see ESI Table S1^†).²³ However, the resulting framework is instable under ambient conditions and a transition to a unknown nearly nonporous phase occurs after only a few days.²³ These are unfavourable properties for a stable sensor material.In this work, we demonstrate the efficiency of the SALE to produce MOFs that combine high stability and high functionality. Therefore, we use the MIL-140D-sdc framework as stable backbone. For the preparation of the mixed-linker MOF (MIL-140D-sdc/abdc), we substitute sdc²⁻ with abdc²⁻via SALE by immersing the MIL-140D-sdc in a DMF solution of H₂abdc and storing it at 120 °C for 24 h (up to 1 eq. H₂abdc with respect to the Zr cations in the framework, see ESI Table S2^†).For verifying the successful SALE, the exchanged MOF samples were disassembled and analysed with ¹H-NMR spectroscopy (ESI Fig. S2 and S3^†). The evaluation has shown that the level of conversion rises with an increasing amount of provided linkers (H₂abdc). The maximum exchange rate is slightly below 50%.Powder X-ray diffraction (PXRD) is used to check the stability of the compounds after each reaction step. After exchanging the MIL-140D-sdc with abdc²⁻ at 120 °C, the solids exhibit the same diffraction pattern, but the colour has changed from white to reddish (Fig. 1a).Open in a separate windowFig. 1Presentation of the conducted modification, incorporation and gas exposure with MIL-140D-sdc structured MOFs. (a) Powder XRD pattern of the samples prepared with a SALE starting from MIL-140D-sdc and the resulting colour change with different amounts of H₂abdc. (b) Powder XRD pattern after the incorporation of increasing amounts of Cu²⁺ into the MIL-140D-sdc/abdc framework and the observed colour change and (c) powder XRD pattern and pictures of the same materials after the exposure to 100 ppm H₂S.The advantage of MIL-140 structured MOFs results from the stacking of the linkers and the resulting short distance between the azo groups. This arrangement should be promising for the coordination of copper ions, since in literature the molecules either have additional functional groups for the coordination or the metal ions are located between two azo groups.²⁴ Subsequently, copper ions are incorporated into the framework. For this purpose, the linker-exchanged MOF is dispersed in DMF and stirred for 1 hour at room temperature while adding copper chloride. The amount of copper chloride used is identical to the previously used amount of added linker H₂abdc (see ESI Table S3^†). After the copper ions were integrated into the framework, the colour of the MOF changed from red to green (Fig. 1b). Although the samples still show the same diffraction pattern, a closer look reveals differences. Thus, the 200-reflection (at 5° 2Θ) shifts slightly to smaller angles and in the range of 10° 2Θ the intensity of two reflections increase (ESI Fig. S4^†). Neither the shifted reflection nor the colour change can be observed during the treatment of UiO-abdc and MIL-140D-H with copper chloride. Additionally, pure MIL-140D-H appears not to be stable during this reaction (ESI Fig. S5 and S6^†).Nitrogen physisorption measurements verified that there is no significant quantity of linker molecules in the tunnel-like pores after the SALE (ESI Fig. S12 and Table S5^†). In order to demonstrate that the integrated copper ions do not inhibit the accessibility of the pores, N₂ physisorption measurements have been repeated (ESI Fig. S13^†). Indeed, the experimental BET areas barely change and are only about 100 m² g⁻¹ lower (ESI Table S6^†). It can therefore be assumed that the copper ions are coordinated at the azo groups of the linkers and thus hardly contribute to a loss of surface area.For further simplification, at this point the focus is on the samples with the highest exchanged amount of linker and highest stored quantity of Cu²⁺ (1 eq. each). For a more detailed evaluation of the pore size and thus the location of the incorporated copper ions, argon physisorption measurements were carried out. Compared to the originally used sample MIL-140D-sdc, the BET areas are only slightly reduced and also the calculated pore size distributions for all samples show a good correlation (Fig. S15, S16 and Table S8^†). Both measurements indicate a coordination of the copper ions at the azo groups of the linkers. Furthermore, this result contradicts an excessive adsorption of the copper ions in the tunnel-like pores.The amount of copper coordinated in the MOF is estimated by EDX spectroscopy. For this purpose, the MOF was offered two different quantities of copper salt (0.5 and 1.0 eq.) for complexation. In comparison to the SALE sample, the EDX measurements show the same copper content of 0.4 copper atoms per sum formula, regardless of whether 0.5 or 1.0 eq. copper salt was added (see ESI Fig. S17–S19 and Table S9^†). The similar value is due to the fact that only half of the linkers are exchanged during the SALE and again suggests the coordination of the copper ions at the azo groups.The thermogravimetric data are a further indication for the successful storage of Cu²⁺ in the framework. The sample obtained after the SALE shows a similar thermal decomposition as the starting material MIL-140D-sdc. Both materials have a thermal stability of about 350 °C, but the residual mass is lower than calculated in case of the SALE sample (ESI Fig. S21 and Table S10^†). After incorporation, the residual mass increases by approximately 4.5m%, which is equivalent to a copper amount of approximately 0.45 per sum formula and in good agreement with the EDX spectroscopy. The reflections of the powder diffraction pattern of the residue can be accurately assigned to ZrO₂ and CuO (see ESI Fig. S7^†). In addition, the percentage of guests in the framework is increasing drastically. This could be an indication that the copper ions act as Lewis acidic sites where solvent molecules preferentially coordinate. In order to estimate the Lewis acidity of a MOF, the shift of the acetone absorption band can be considered.²⁵ In the presence of strongly Lewis-acidic MOFs, the stretching vibration of the carbonyl group shifts to smaller wave numbers. In this case, the acetone vibration is located at 1690 cm⁻¹ and thus 25 cm⁻¹ lower than for uncoordinated acetone (see ESI Fig. S10^†).In the last step, the incorporated Cu²⁺ ions will be used for the detection of H₂S. With this approach it is possible to transfer the properties of the molecular complexes¹¹ into a solid state material, as we have already shown with a calixarene-based MOF for highly selective NO₂ detection.²⁶ It is generally assumed that the implicit chemical reaction is the formation of CuS.¹⁵ Upon this reaction, a fast and impressive colour change occurs from green to black which can be simply observed with the naked eye. Taking the diffraction patterns into account, it is noticeable that the above-mentioned shift of the 200-reflection is reversed upon H₂S exposure, indicating a change in the coordination of the copper ions (see Fig. 1c and ESI Fig. S4^†). After the exposure to H₂S, the BET area of all samples is drastically reduced (see ESI Fig. S14 and Table S7^†) which can be explained by pore blocking effects due to CuS formation.The formation of CuS can additionally be verified with Raman spectroscopy. Here, a weak CuS band can be found at 471 cm⁻¹ (see ESI Fig. S11^†). Again, this is an indication for the formation of CuS located inside the pore channels or on the surface of the MOFs as pore blocker. This is also an explanation for the decrease of the BET surfaces from the physisorption measurements. After the MOF has been exposed to H₂S, the acetone vibration disappears completely from the IR spectrum. This observation supports the thesis that the coordination of the copper ions at the azo groups and thus the Lewis acidic effect is no longer present after this step.Additionally, the experimental residue of the MOF is similar to the Cu²⁺ incorporated sample (see ESI Fig. S21 and Table S10^†) and is composed of ZrO₂ and CuO (see ESI Fig. S8^†). Moreover, the EDX measurement show a sulphur content in this sample which is comparable to the amount of copper and obviously CuS is formed (see ESI Fig. S20 and Table S9^†).The chemical reaction of the sensor response is the formation of CuS and the associated colour change from green to black. For the application as H₂S sensor material, the spectroscopic characteristics were determined. As already can be seen in the photographs in Fig. 1, the colouration becomes more pronounced with increasing amount of provided linker during the SALE and thus also of the amount of incorporated Cu²⁺. This observation is supported by the UV/Vis measurements. Here, the absorption also intensifies with increasing amounts of H₂abdc after the SALE in the range between 430 and 500 nm. The pure MIL-140D-sdc shows no absorption in this region at all (see ESI Fig. S22a^†). The integration of azo groups is essential for the incorporation of copper ions into the MOF and thus for the detection of H₂S. When a pure MIL-140D-sdc is immersed in a copper chloride solution it can be shown that no copper is coordinated by the MOFs by comparison of the UV/Vis spectra. The absorption does not change because no copper ions can be complexed by the sdc²⁻ linker of pure MIL-140D-sdc. When the copper treated MIL-140D-sdc was exposed for 30 minutes to 100 ppm H₂S no measurable difference in the spectra occurs (see Fig. S24^†). As a result, it can be concluded that no copper ions were deposited in the framework at all.After the incorporation of copper ions in the MIL-140D-sdc/abdc, a second absorption maximum at 730 nm is visible (see ESI Fig. S22b^†). As before, the maximum absorption increases with the amount of copper salt used. After exposure to H₂S, all samples immediately change their colour, whereby the highest absorption can be observed in the sample with the highest copper and abdc²⁻ content. At this point, the entire absorption in the visible range of the light spectrum increases (see ESI Fig. S22c and S23^†).During a 30 minute exposure to 100 ppm H₂S a cycled UV/Vis measurement was conducted to observe directly the change in the absorbance. Within less than 1 minute, an increase of the absorption between 550 and 600 nm is visible. After 30 minutes the saturation is reached and absorbance is approximately 450 percent higher compared to the starting material after the Cu²⁺ incorporation (see Fig. 2). For a more precise analysis, the sample was exposed to 100 ppm H₂S for 30 minutes and the absorbance at 580 nm was recorded every five seconds. Here the MOF exhibits almost no absorption after the incorporation of Cu²⁺. After the exposure to H₂S, the absorbance increases immediately and is again reaching a saturation point with an absorbance twice as high (see Fig. 3).Open in a separate windowFig. 2UV/Vis spectra of the MIL-140D-sdc/abdc after the SALE with H₂abdc (red), after the incorporation of Cu²⁺ (green) and after the exposure to 100 ppm H₂S with different time steps ranging from 1 to 30 minutes.Open in a separate windowFig. 3UV/Vis measurement of the Cu²⁺ incorporated sample (1 eq.) at 580 nm. Before the gas exposure (100 ppm H₂S) a baseline was measured under room conditions.The next step was to investigate the selectivity. For this purpose, the MOF was exposed to various gases such as CO₂ and CO (100 ppm), NO₂ (10 ppm) or stored in an NH₃ and diethyl ether (DEE) atmosphere for 30 minutes. In terms of stability, a partly decomposition occurs only in presence of CO due to its interaction with the azo group (see ESI Fig. S9^†).²⁷ Furthermore, the exposure to these gases results in a colour change for each sample, which can be explained by a ligand exchange at the coordinated copper ions (ESI Fig. S25^†).²⁸ Each sample was again investigated with UV/Vis spectroscopy and the main differences in the spectra are in the range of 400 to 550 and 650 to 800 nm (see ESI Fig. S26^†).The other examined gases cause only minor changes in the range of 580 nm. Only in the case of H₂S a significant change in the spectrum at this wavelength was observed, which should enable quantitative detection of this gas. The absorbances of the different samples at 580 nm are compared and set in relation to the original absorbance of the copper stored sample. The result is shown in Fig. 4, which demonstrates the high selectivity of this material for H₂S measured under these conditions.Open in a separate windowFig. 4Comparison of the differences in the absorbance of the sensor material in the presence of different gases (exposure time: 30 minutes). The measured values are all given in relation to the starting material whose absorbance was defined as 100%.In summary, it was demonstrated that through the post-synthetic step of the SALE a mixed-linker MOF has been obtained, the composition of which can be controlled by the amount of H₂abdc used in the SALE process. Furthermore, the new MIL-140D-sdc/abdc combines the stability of the MIL-140D-sdc framework and the functionality of the introduced azo groups. This again emphasizes the unique nature of the SALE for the production of differently functionalized frameworks and increases the tunability of manufactured materials. For the first time it was possible to use these linkers in a porous solid as coordination sites for copper ions. The porosity of the MOF is barely affected, making the coordinated metal ions accessible to guests. The guests can be different gases that coordinate under a ligand exchange with the copper ions. Nevertheless, this material has a high selectivity towards H₂S, which is expressed by the colour change from green to black, most likely due to the formation of CuS.The MIL-140D-sdc/abdc seems to be an interesting starting material for the coordination of various metals, due to the close arrangement of the linkers. Further, more elaborated, functional groups could help to optimize the sensing process or enhance the reversibility of the sensing reaction. This property can be used for further post-synthetic modifications of the linker and might also result in other attractive sensor materials.