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1.
The tripeptide, L-valyl-glycyl-glycine (C9H17N3O4, molecular weight = 231), crystallizes in the monoclinic space group C2, with a = 24.058(3)Å, b = 4.801(1), c = 10.623(2), β = 110.02(1)° and Z = 4. The structure was determined by direct methods and refined to a final R-index of 0.043 for 830 reflections (sinθ/Λ ≤ 0.53 A-1) with I> 1.0s?. The molecule exists as a zwitterion. The peptide units are trans and one of them shows significant deviations from planarity (Δω2 = 9.3°). The peptide chain repeat distance, 1Cα-3Cα, is 7.23Å and the molecule displays a highly extended conformation with backbone torsion angles of ψ1 = 123.1°, ω1 = - 179.4°, ø2 = - 155.1°, ψ;2 = 154.7°, ω2 = 170.7°, ø3 = - 146.6° and ψ3 = 180.0°. For the valyl side chain, χ11 = - 52.5°, χ12 = 174.2°. The packing involves hydrogen-bonded interactions between successive molecules related by the β-translation of the lattice, giving rise to the familiar parallel β-sheet structure which appears to be the most extended one observed to date.  相似文献   

2.
The crystal structure of t-Boc-glycyl-L-phenylalanine (C14H22N2O5, molecular weight = 298) has been determined. Crystals are monoclinic, space group P21, with a = 7.599(1)Å, b = 9.576(2), c = 12.841(2), β = 97.21(1)°, Z = 2, Dm = 1.149, D° = 1.168 g · cm-3. Trial structure was obtained by direct methods and refined to a final R-index of 0.064 for 1465 reflections with I> 1s?. The peptide unit is trans planar and is nearly perpendicular to the plane containing the urethane moiety. The plane of the carboxyl group makes a dihedral angle of 16.0° with the peptide unit. The backbone torison angles are ω0 = - 176.9°, ø1 = - 88.0°, ψ1 = - 14.5°, ω1 = 176.4°, ø2 = - 164.7° and ψ2 = 170.3°. The phenylalanine side chain conformation is represented by the torsion angles χ1 = 52.0°, χ2 = 85.8°.  相似文献   

3.
The crystal structure of a tripeptide, glycyl-glycyl-L-phenylalanine HCl (C13H18N3O4 ± HCl, molecular weight = 316.5) has been determined. The crystals are orthorhombic, space group P212121, with a = 4.877 (2) Å, b = 9.956(3), c = 32.690(5) and Z = 4. The final R-index is 0.043 for 1325 reflections (sinØ/Λ ± 0.55 Å-1) with I > 2.0 s? (I). The N-terminal of the molecule is protonated and the C-terminal exists in an un-ionised state. The peptide units are trans and one of them shows significant deviations from planarity (¶Δω1¶ = 11.3°). The peptide backbone is folded with torsion angles of: ø1 = 165.5°, ω1 = — 168.7°, ø2 = 63.6°, ø2 = — 153.6°, ω2 = 176.5°, ø3 = — 72.2° and Φ3 = 166.5°. For the side chain of phenylalanine, X1 = — 79.5° and X2 = 86.8°. An intramolecular water bridge links the two ends of the molecule.  相似文献   

4.
The crystal structure of the tripeptide t-Boc-L-Pro-D-Ala-D-Ala-NHCH3, monohydrate, (C17H30N4O5·H2O, molecular weight = 404.44) has been determined by single crystal X-ray diffraction. The crystals are mono-clinic, space group P21, a = 9.2585(4), b = 9.3541(5). c = 12.4529(4) Å, β= 96.449(3)°, Z = 2. The peptide units are in the trans and the tBoc-Pro bond in the cis orientation. The first and third peptide units show significant deviations from planarity (Δω=5.2° and Δω=3.7°, respectively). The backbone torsion angles are: φ1, = -60°, ψ1/= 143.3°, ω1= -174.8°, φ2= 148.4°, ψ2= -143.1°, ω2= -179.7°, φ3= 151.4°, ψ3= -151.9°, ω3= -176.3°. The pyrrolidine ring of the proline residue adopts the C2— Cγ conformation. The molecular packing gives rise to an antiparallel β-sheet structure formed of dimeric repeating units of the peptide. The surface of the dimeric β-sheet is hydrophobic. Water molecules are found systematically at the edges of the sheets interacting with the urethane oxygen and terminal amino groups. Surface catalysis of an L-Ala to D-Ala epimerization process by water molecules adsorbed on to an incipient β-sheet is suggested as a mechanism whereby crystals of the title peptide were obtained from a solution of tBoc-Pro-D-Ala-Ala-NHCH3.  相似文献   

5.
The crystal structure analysis of the cyclic biscystine peptide [Boc-Cys1-Ala2-Cys3-NHCH3]2 with two disulfide bridges confirms the antiparallel β-sheet conformation for the molecule as proposed for the conformation in solution. The molecule has exact twofold rotation symmetry. The 22-membered ring contains two transannular NH ? OC hydrogen bonds and two additional NH ? OC bonds are formed at both ends of the molecule between the terminal (CH3)3COCO and NHCH3 groups. The antiparallel peptide strands are distorted from a regularly pleated sheet, caused mainly by the L-Ala residue in which φ=– 155° and ψ= 162°. In the disulfide bridge Cα (1)-Cβ (1)-S(1)-(3′)-Cβ(3′)-Cα(3′), S—S = 2.030 Å, angles Cβ SS = 107° and 105°, and the torsional angles are –49, –104, +99, –81, –61°, respectively. The biscystine peptide crystallizes in space group C2 with a = 14.555(2) Å, b = 10.854(2) Å, c = 16.512(2)Å, and β= 101.34(1) with one-half formula unit of C30H52N8O10S4· 2(CH3)2SO per asymmetric unit. Least-squares refinement of 1375 reflections observed with |F| > 3σ(F) yielded an R factor of 7.2%.  相似文献   

6.
The crystal structure of a tripeptide, tryptophanyl-glycyl-glycine dihydrate (C15H18N4O4·2H2O, molecular weight = 354) has been determined. The crystals are orthorhombic, space group P212121 with a= 7.875 (1) A,b= 9.009(1), c= 24.307(1) and Z = 4. The final R-index is 0.058 for 1488 reflections ((sin θ/λ≤ 0.6 A?1) with I < 2σ(I). The molecule exists as a zwitterion, with terminal NH+3 and COO? groups. The peptide units are trans and nearly perpendicular to the plane of the carboxyl group. The backbone torsion angles are: ψ1= 132.7°, ω1= 174.2°, φ2 88.2°, ψ= 8.6°, ω2 - 179.8°, φ= - 85.2°, ψ31, = - 178.1°, ψ32 5.0°. For the sidechain of tryptophan, χ1= - 171.6°, χ2 101.0°.  相似文献   

7.
The dipeptide, l -tyrosyl-l -phenylalanine (C18H20N2O4, molecular weight = 346) crystallizes as a monohydrate in the orthorhombic system, space group P212121 with a = 5.744(2), b = 8.284(2), c = 35.518(6)Å, Z = 4. The structure was solved by direct methods and refined to a final R-index of 0.060. The peptide unit is trans and planar, and makes a dihedral angle of 93° with the plane of the carboxyl group. The backbone torsion angles are given by: ø1 = 164.7°, ω1 = 177.0°, φ2 = – 70.1°, ø2 = 146.6°. The values of the side-chain torsion angles (χ1, χ2) are (47.3°, 79.9°) for tyrosine and (– 75.1°, 75.9°) for phenylalanine. The planes of the two (side-chain) aromatic rings make a dihedral angle of 142.6° and their centres are separated by 9.3 Å.  相似文献   

8.
The crystal structure of a dipeptide tert-butyloxycarbonyl-l -alanylglycine monohydrate (C10H18N2O5·H2O), molecular weight 264, has been determined. The crystals are monoclinic, space group P21, with a= 10.767(1), b= 6.317(1), c= 10.981(2) Å, β= 109.15(2)°, and Z= 2, Dc= 1.24 g cm?3. The structure was solved by direct methods and refined to 3 final R-index of 0.045 for 856 reflections (sin θ/λ < 0.55 Å?1) with I > 2 σ. The N-terminus of the molecule blocked with the t-Boc group is uncharged and the C-terminus exists in an unionized state. The peptide unit is trans and shows slight deviations from planarity. (Δω= 3.1°). The peptide backbone is folded, with torsion angles of φ1= -76.0(5), ψ1= 164.3(4), ω1= 176.9(5), φ2= 116.1(5), ψ21= - 2.8(7) and ψ22= 177.8(4)°. The conformation about the urethane bond (C5–N1) is trans. The urethane group is essentially planar. The conformation of the boc group is trans–trans.  相似文献   

9.
The dehydro-peptide Boc-L-Val-δPhe-L-Ile-OCH3 was synthesized by the azlactone method in the solution phase. The peptide crystallized from a methanol/dimethyl sulfoxide (95:5) mixture in space group P61, with a=b= 15.312(1), c= 22.164(5) Å. The structure was determined by direct methods and refined to an R value of 0.098 for 1589 observed reflections [I≥ 1.5 σ(I)]. The peptide adopts an S-shaped conformation with torsion angles: ø1=-127(1), ψ1= -44(1), ø2, = 67(1), ψ2, = 37(1), ø3,=-82(1)°. The side-chain torsion angles in δPhe of X12= 1(2), X2.12= 7(2) and X2.22 = 177(1)° indicate that the δPhe residue is essentially planar. In valyl residue the two side-chain torsion angles are X11= -65(1) and X21= 177(1), whereas the torsion angles in Ile are X1,13= 72(2), X1,23= -159(2), X23= 150(2)°. This is the first peptide which does not adopt a folded conformation for a sequence with a δPhe at the (i+ 2) position. The molecular packing in the crystals is stabilized by several hydrogen bonds: N1-H1?O1’= 2.77(1) Å, N2-H2?O1’= 2.95(1) Å, N3-H3?O2=2.85(1) Å and a possible weak interaction N2-H2?O1’3.29(1) Å- within the columns of molecules along the c-axis and van der Waals forces between the columns. © Munksgaard 1996.  相似文献   

10.
Crystals of N-formyl-l -alanyl-l -aspartic acid (C8H11N2O6) grown from aqueous methanol solution are orthorhombic, space group, P212121 with cell parameters at 294 K of a = 13.619(2), b = 8.567(2), c = 9.583(3)Å, V = 1118.1Å3, M.W. = 232.2, Z = 4, Dm= 1.38g/cm3 and Dx= 1.378g/cm3. The crystal structure was solved by the application of direct methods and refined to an R value of 0.075 for 1244 reflections with I ≥ 3σ collected on a CAD-4 diffractometer. The structure contains two short inter-molecular hydrogen bonds: (i) between the C-terminal carboxyl OH and the N-acyl oxygen (2.624(3)Å), a characteristic feature found in many N-acyl peptides and (ii) between the aspartic carboxyl OH and the peptide oxygen OP1 (2.623(3)Å). The peptide is nonplanar (ω= 165.5(6)°). The molecule takes up a folded conformation in contrast to N-formyl peptides which form extended β-sheets; the values of ø1, Ψ1, ø2, Ψ12, and Ψ22 are, respectively –65.7(6), 152.0(5), –107.2(5), 30.9(5), and –150.3(6). The aspartic acid side chain conformation is g? with χ1= 73.1(5). The formyl group, as expected, is transplanar [OF-CF-N1-CA1 = -4.0(8)°]. The presence of the short O–H … O hydrogen bond emerges as a structural feature common to this peptide and several other N-formyl peptides. There are no C-H … O hydrogen bonds in this structure.  相似文献   

11.
A solid-state and solution conformation analyses of the cyclopentapeptide cyclo(Phe-Phe-Aib-Leu-Pro) has been carried out by X-ray diffraction and nuclear magnetic resonance techniques. The structure of the hexagonal crystals, grown from a methanol solution [a=b= 16.530(4) Å, c= 21.356(9) Å, space group P65, Z = 6], shows the presence of one intramolecular N-H?O=C hydrogen bond with the formation of a γ-turn (C7). The Aib3 residue, at the center of the γ-turn, presents unexpected values of the torsion angles [φ= 70.5° and ψ= -73.8°], which have been observed only once before for this helicogenic residue. A cis peptide bond occurs between Leu4 and Pro5; all other peptide bonds are trans. The overall conformation for the cyclopentapeptide with one cis-peptide bond on one side and an intramolecular γ-turn on the opposite side results in an equatorial topology of the side-chains of the Phe1, Phe2 and Leu4 residues. Indeed, the Cα-Cβand Cβ-Cγ bonds of these residues lie approximately in the mean plane of the cyclic ring system. The structure is compared with data in the literature on cyclic pentapeptides. In addition the Pro-Phe-Phe moiety shows a conformation similar to that observed in other larger cyclic bioactive peptides, which indicates a reduced number of conformations for this sequence. The solution study was carried out in three different solvent systems: chloroform, acetonitrile and methanol in the temperature interval 220–300 K. In all three solvents the room temperature spectra show that the peptide is conformationally nonhomogeneous. In acetonitrile at low temperatures it is possible to reduce the conformational equilibrium to two predominant conformers which differ for the cis-trans isomerism of the Leu4-Pro5 peptide bond.  相似文献   

12.
l -Valyl-l -lysine hydrochloride, C11N3O3H23 HCl, crystallizes in the monoclinic space group P2, with a = 5.438(5), b = 14.188(5), c = 9.521(5) Å, β= 95.38(2)° and Z = 2. The crystal structure, solved by direct methods, refined to R = 0.036, using full matrix least-squares method. The peptide exists in a zwitterionic form, with the N atom of the lysine side-chain protonated. The two γ-carbons of the valine side-chain have positional disorder, giving rise to two conformations, χ111= -67.3 and 65.9°, one of which (65.9°) is sterically less favourable and has been found to be less popular amongst residues branching at β-C. The lysine side-chain has the geometry of g? tgt, not seen in crystal structures of the dipeptides reported so far. Interestingly, χ32 (63.6°) of lysine side-chain has a gauche+ conformation unlike in most of the other structures, where it is trans. The neighbouring peptide molecules are hydrogen bonded in a head-to-tail fashion, a rather uncommon interaction in lysine peptide structures. The structure shows considerable similarity with that of l -Lys-l -Val HO in conformational angles and H-bond interactions [4].  相似文献   

13.
The peptide N-Boc-L-Pro-dehydro-Leu-NHCH3 was synthesized to examine the nature of β-bend as a result of dehydro-Leu in the sequence. The peptide crystallizes from methanol-water mixture at 4° in orthorhombic space group P22121 with a = 5.726(1)Å, b = 14.989(4) Å, c = 24.131(9) Å, V = 2071(1) Å3, Z = 4, dm = 1.064(5)gcm-3 and dc = 1.0886(5)gcm-3. The structure was solved by direct methods using SHELXS 86 and it was refined by full-matrix least-squares procedure to an R value of 0.059 for 957 observed reflections. The peptide is found to adopt a β-bend type II conformation with φ1=– 51(1)°, ψ1= 133(1)°, φ2= 74(2)° and ψ2= 8(2)°. The β-bend is stabilized by an intra-chain hydrogen bond between the carbonyl oxygen of ith residue and the NH of (i + 3)th residue. The five-membered pyrrolidine ring of Pro-residue adopts an ideal Cγ-exo conformation with torsion angles of χ11=– 25(1)°, χ12= 38(1)°, χ2=– 34(1)°, χ14= 20(1)° and χ10= 2(1)°. The side chain conformation angles of dehydro-Leu residue are χ2= 12(2)°, χ22.1=– 112(2)° and χ22.2= 136(2)°. The crystal structure is stabilized by a network of hydrogen bonds and van der Waals interactions.  相似文献   

14.
The conformation of the peptide Boc-L-Met-Aib-L-Phe-OMe has been studied in the solid state and solution by X-ray diffraction and 1H n.m.r., respectively. The peptide differs only in the N-terminal protecting group from the biologically active chemotactic peptide analog formyl-L-Met-Aib-L-Phe-OMe. The molecules adopt a type-II ß-turn in the solid state with Met and Aib as the corner residues (øMet =- 51.8o, øMet = 139.5o, øAib = 58.1o, øAib = 37.0o). A single, weak 4 -> 1 intramolecular hydrogen bond is observed between the Boc CO and Phe NH groups (N—O 3.25 Å, N-H—O 128.4o). 1Hn.m.r. studies, using solvent and temperature dependencies of NH chemical shifts and paramagneti radical induced line broadening of NH resonances, suggest that the Phe NH is solvent shielded in CDCI3 and (CD3)2SO. Nuclear Overhauser effects observed between Met Cα H and Aib NH protons provide evidence of the occurrence of Met-Aib type-II ß-turns in these solvents.  相似文献   

15.
The crystal structure of Boc-Pro-Val-Gly-NH2 has been determined: monoclinic; P21; a = 9.331 (3) Å, b = 9.532 (4), c = 23.080 (9), β= 91.33 (3)R, Z = 4; R = 0.053 for 3400 reflections with ˙Fo˙,>α(Fo). There are two independent but very similar molecules in the crystal. The peptide main chains are in an extended form, and packed in two kinds of antiparallel β sheets, the (φ, Φ) angles of the central Val residues are (-156°, 146°) and (-139°, 155°), and the mean length of the N- H . 0 hydrogen bonds in the sheets is 2.965 Å. A detailed study of the conformations of the Val residues in oligopeptide crystals shows that the preferred conformation of Val in peptides is: the (φ, Φ) angles close to those of the antiparallel β sheet, and Cγ1 and Cγ2, against N with respect to the Cα– Cβ bond, at either (trans, gauche) or (-gauche, gauche). The mean π(NCαC') angle of such Val residues is 107.9(9)°. A twisting in the β sheets is also discussed.  相似文献   

16.
L-tyrosyl-L-tyrosine crystallizes as a dihydrate in the orthorhombic system, space group C2221, with a = 12.105(2), b = 12.789(2), c = 24.492(3) Å, Z = 8. The structure was solved by direct methods and refined to a final R-value of 0.059 for 1740 observed reflections. The molecule exists as a zwitterion, the peptide unit is trans planar, and the backbone torsion angles correspond to an extended conformation, with e1 = 149.4°, e2 = - 161.2°, e2 = 158.3°. The values of the side-chain torsion angles (χ1, χ2) are (- 58.8°, - 63.1°) for the first tyrosine and (- 171.7°, - 116.5°) for the second. The planes of the aromatic rings are nearly parallel (dihedral angle of 6.1°), and their centers are separated by 10.9 Å. The carboxyl plane forms a dihedral angle of 23.8° with the plane of the peptide bond.  相似文献   

17.
The structure of a dihydrated form of glycyl-L-tyrosyl-L-alanine (GYA) has been determined as part of a series of peptide structural investigations and development of microscale vapor diffusion experiments for peptide crystal growth. Crystals were grown by the hanging-drop method against sodium acetate. The tripeptide is a zwitterion in the crystal, adopting an extended conformation through glycine, a nearly perpendicular bend attyrosine and a reverse turn for the C-terminal carboxylate. Principal backbone torsion angles are ψ1 175(1)°, ω2 173(1)°, φ2 -119(1)°, ψ2 120(1)°, ω33 172(1)°, φ3 -73(1)°,ψ31 -9(1)°, ψ32 171(1)°. The tyrosyl side chain adopts an unusual orientation (χ1/2= -86(1)°). The relationship of the GYA.2H2O structure to GYA sequences in proteins is examined, particularly as regards its helix-forming potential. Crystal data: C14H19N3O4.2H2O, Mr = 345.36, orthorhombic, P212121, a = 4.810 (4), b= 11.400(7), c = 30.162(23)Å, V=1653.8(24)Å?3, Z = 4, Dx= 1.387 Mgm?3, λ(CuKα?)= 1.540 Åμ= 9.053 mm?1, F(000) = 736, T = 199K, R = 0.041 for 1458 observations with I ≥ 3σ(I).  相似文献   

18.
The crystal structure of the dipeptide L-prolyl-L-glutamic acid dihydrate, L-Pro-L-Glu · 2H2O, C10H20O7N2, has been determined from three-dimensional X-ray diffractometer data. The dipeptide crystallizes in the space group P21 of the monoclinic system with two formula units in a cell of dimensions a= 5.629(2), b= 11.832(5), c= 10.485(4)Å, and β= 103.06(3)°. The structure was solved by direct methods and refined by least squares techniques to a final value of the conventional R-factor (on F) of 0.039 based on 1798 independent intensities with I ≥ 3s?(I). The dipeptide occurs as a zwitterion in the crystal with the pyrrolidine nitrogen atom protonated and the main chain carboxyl group deprotonated. The conformation of the peptide linkage is trans, the ω torsional angle being 173.7°. The pyrrolidine ring adopts the Cs-Cβ endo conformation and the conformation of the glutamyl side chain is fully extended. There is considerable intermolecular hydrogen bonding in the crystals.  相似文献   

19.
The crystal structure of N-α-acetyl-l -arginine ethylamide perchlorate (molecular formula: C10H21N5O2 ± HClO4) has been determined from X-ray diffraction data. This arginine derivative has the two charged ends substituted by peptide units and thus becomes representative of an arginyl residue in a protein. The crystals are orthorhombic, space group P21,21,21, a = 7.485 (2), b = 28.623 (5), c = 7.261 (3) Å, Z = 4. The structure was solved by direct methods and refined by full matrix least-squares using 559 reflections to an R = 0.052. The molecule shows two planar peptide units with φ and ø values in the β pleated sheet region. The side chain torsion angles are in trans conformation, except the χ1, angle which is in the gauche(-) region. This observation further illustrates that this is one of the favoured side chain conformations of arginine, together with the all-trans conformation. Symmetric double hydrogen bonds are observed between the guanidinium group and perchlorate anions. The H(N) and oxygen atoms of the amide groups also form hydrogen bonds.  相似文献   

20.
Crystals of the tripeptide, glycyl-glycyl-sarcosine (C7H13N3O4) from aqueous methanol are orthorhombic, space group Pbcn with cell parameters at 294 K of a = 8.279(1), b = 9.229(4), c = 24.447(5) Å, V = 1868.0 Å3, M.W. = 203.2, and Z = 8. The crystal structure was solved and refined using CAD-4 data (1171 reflections ≥ 3σ) to a final R-value of 0.053. The first peptide linkage is trans and planar whereas the second peptide link between Gly and sarcosine is cis and appreciably non-planar (w = 7.4°). The peptide backbone has an extended conformation at the N-terminal part but adopts a polyglycine-II type of conformation at the C-terminal part. The backbone torsion angles are: Ψ1, =? 173.9, w1=? 177.8, (φ, Ψ2) = (-178.8, -170.8), w2= 7.4, (φ3, Ψ3) = (-81.6, 165.6°).  相似文献   

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