Switching genes in Schizosaccharomyces pombe: their influence on cell viability and recombination

Summary In Schizosaccharomyces pombe, mutations in 10 swi genes are known which reduce but not abolish mating-type (MT) switching in homothallic (h ⁹⁰) strains. Three classes (Ia, Ib, and II) of swi genes are distinguished. Three swi1 alleles are nonsense mutations. In strains with mutations in two or three swi genes, a cumulative reduction of MT switching only occurs if the genes belong to different classes. The class 1a combinations swi1 swi7 and swi3 swi7 are lethal. Besides its influence on MT switching, swi5 also reduces the frequencies of meiotic intragenic recombination and gene conversion in the ade6 locus.We dedicate this paper to Professor Kaudewitz on the occasion of his retirement     

Switching genes in Schizosaccharomyces pombe

Summary In homothallic (h ⁹⁰) Schizosaccharomyces pombe strains mutants occur which exhibit reduced frequencies of mating-type switching. The colonies of such mutants show a mottled iodine reaction. The underlying mutations map either in a switching signal at matl or in switching (swi) genes which are not linked to the mating-type region. Forty-nine swi mutants were examined. They map in ten different swi genes, swi1 to swi10. Seven swi genes were assigned to chromosomes I and II, respectively. Two classes of swi genes can be distinguished: when plated, class I mutants yield only mottled colonies, whereas class Il mutants yield mottled and iodine-negative colonies (most of the latter are h ¹).     

Mating configurations in Schizosaccharomyces pombe strains of different geographical origins

In genetic research with Schizosaccharomyces pombe the strains used are almost exclusively descendants of the clones originally isolated by Leupold. In the standard homothallic (h ⁹⁰) strain three closely linked mating-type (MT) genes are present in the MT region: the actual MT locus, mat1, and two silent cassettes, mat2 and mat3, respectively. Various rearrangements are known in the MT region, e.g., heterothallic h ⁺ or h ^- strains arise by duplications or deletions. In the present paper we analysed the mating behavior and the configurations of the MT regions of 19 S. pombe isolates from different parts of the world. In comparison with the Leupold strains several new MT configurations were found.     

Some of the swi genes of Schizosaccharomyces pombe also have a function in the repair of radiation damage

Summary In Schizosaccharomyces pombe the frequency of mating-type (MT) switching is reduced by mutations in the swi genes. The ten hitherto known swi genes can be subdivided into three classes: Ia, Ib and II. Strains having swi5 (class Ib), swi9 (class II) and swi10 (class II) mutations do not only show reduced MT switching, but also exhibit an increased sensitivity to UV- and -rays. For that reason, 19 previously described rad genes were tested for their effect on MT switching. We found that swi9, rad10, rad16 and rad20 are allelic with each other indicating that the former allocation of these rad mutations to three different genes must have been erroneous. Among the remaining 16 rad genes examined, rad22 seems to be a new class II swi gene. The double mutants swi5 swi9 and swi5 swi10, but not swi9 swi10, are much more sensitive to radiation than the respective single mutants. Thus a cumulative increase in sensitivity occurs only if the mutants belong to different classes; previously the same correlation was found with regard to cumulative effects in MT switching.     

Effective long range mapping in Schizosaccharomyces pombe with the help of swi5

The switching gene swi5 has a function in mating-type switching. In addition, the swi5 mutation causes an increased radiation sensitivity and reduces meiotic recombination about ten-fold. Based on the latter property, an experimental protocol was developed for using swi5 in long-range mapping in S. pombe. It is suitable for a speedy mapping of any new gene which has not yet been cloned. The procedure was used to clarify the map positions of some genes.     

Rescue of lethal mutations in the mating-type region of Schizosaccharomyces pombe by an extrachromosomal element

Summary In Schizosaccharomyces pombe spontaneous deletions occur in the mating-type (MT) region; the latter comprises closely linked mat loci and intervening L and K regions. The loss of L is lethal; such deletions (e.g., h ^+L ) can only be maintained in diploid strains. In tetrads of h ^+L /h ^-S strains we found some viable h ^+L spores yielding colonies with a weak iodine reaction. These wipI clones contain mat2:1° (M) plasmids derived from h ^-S . The L region of the plasmid can compensate the chromosomal h ^+L deletion. The episomal M cassette is also expressed. Furthermore, MT switching takes place in this cassette. The plasmids can integrate into the chromosomal MT region giving rise to h ⁹⁰ , h ^+R and some other configurations.     

Sterile mutants of Schizosaccharomyces pombe: Analysis by somatic hybridization

Summary Sixteen sterile mutants of Schizosaccharomyces pombe, isolated from homothallic h ⁹⁰strains, were examined. It was found that they are blocked either in copulation and meiosis or in copulation alone.Protoplasts of the sterile strains were fused with protoplasts of h^+N, h^–S or h ⁹⁰strains. In these somatic crosses, eight of the sterile strains yielded hybrids which were able to form azygotic asci. Tetrad analyses revealed that seven of these sterile strains contain a single mutation; the mutations represent at least five sterility genes (ste2, ste3, ste4, ste5, ste6). One sterile strain contains two unlinked mutations which do not represent sterility genes, but genes the interaction of which results in a sterile phenotype.     

Construction of an h +Sstrain of Schizosaccharomyces pombe

Summary By spontaneous in vivo integration of a mat2:1° plasmid, containing a Plus (P) cassette, into an h ^-LMT region of Schizosaccharomyces pombe an h ⁺ strain was obtained which neither mutates to h ^- nor to h ⁹⁰. Southern blotting showed that it possesses the same mating-type (MT) configuration as h ^-S except that P information resides in both cassettes. Therefore the strain was called h ^+S. By crossing h ^+S with the h ^- strain LK42 of Engelke et al. (1987) it was possible to obtain h ^- recombinants with the MT configuration mat1:1(M)smt-o-L-mat2:3(P). Because of the totally defective smt signal (smt-o) in these recombinants no MT switching occurs, so that M information is conserved in mat1:1; furthermore the cassette mat2:3(P) is not expressed like in strains with a K region. This proves that the K region does not cause the silencing of mat2:3(P).     

Conversion of homothallic yeast to heterothallism through HO gene disruption

A simple method was developed for the conversion of homothallic Saccharomyces cerevisiae yeast strains to heterothallism through HO gene disruption. An integrative ho::neo disrupted allele was constructed by cloning a dominant selectable marker, the bacterial neo gene, within the HO gene. Transformation of a homothallic diploid S. cerevisiae strain with plasmid DNA containing the ho::neo allele yielded G418-resistant yeast transformants in which one of the HO alleles was replaced by the disrupted ho::neo allele. Meiotic tetrad analysis of four-spored asci from these G418-resistant transformants gave rise to haploid heterothallic and diploid homothallic tetrad progeny. The presence of the ho::neo and HO alleles in the heterothallic and homothallic progeny was confirmed by Souther-blot analysis.     

Homo- and heterothallic sexual types in Schizosaccharomyces pombe var. malidevorans

Summary Although some differences are remarkable, the sexual system of Schizosaccharomyces pombe var. malidevorans is, in principle, compatible with that of Schizosaccharomyces pombe var. pombe. It has two heterothallic types analogous to Leupold's h ⁺ h^–, and a homothallic type, called spotty, which resembles h ⁹⁰. In addition, pseudoheterothallic types (pseudo-h ^– and pseudo-h ⁺) similar to certain mutants of S.p.v. pombe defective in conjugation were also found, as well as a homothallic type (grey) which has not been described in S. p. v. pombe. Genetic analysis of various hybrids constructed by mating and protoplast fusion revealed the probable genetic determination of the sexual types. Assuming a mating-type region similar to that of S.p.v. pombe, a five-gene-system can be supposed. The mat-locus is the residence of the expressible mating type information (either plus or minus), one gene determines whether the clone is homo- or heterothallic, another one regulates the intensity of mating and sporulation, and two are responsible for accomplishing certain mating-type dependent conjugation functions.     

Characterization of a partially fertile ras1-like ste10-UGA nonsense mutant of fission yeast

Summary Mutants which carry a leaky UGA nonsense mutation in the fertility gene ste10 are characterized by a deformed cell morphology which resembles that described in the literature for sterile ras1 ^- (ste5) and ral1 to ral4 mutant cells. Although frequent conjugation attempts are observed in combinations of two ste10 mutant strains of opposite heterothallic mating type, zygotes and asci are formed only rarely and the fertility of such crosses remains low (not more than 1% of the fertility of comparable crosses of two ste ⁺ wild-type strains). The fertility is considerably increased, however, in combinations of the ste10 mutant with ste ⁺ wild-type strains (up to 10% if the h ^– partner, and more than 30% if the h ⁺ partner, carries the ste10 mutation).     

Molecular characterization of h − mutants of Schizosaccharomyces pombe

Summary Meade and Gutz (1976) have described mat2:2 mutants of Schizosaccharomyces pombe having various defects in the Plus (P) function; four different classes were distinguished. Of special interest are the class II mutants in which none of the P mating-type functions is expressed. We made Southern analyses of 23 class II strains. In most of these, the P cassette and the K region are deleted as in h ^–s strains, however, some distinct differences were found as to the intensity of the bands in the blots (classes Ila, Ilb 1, and IIb2). The class Ilb mutants have strong bands characteristic of lethal deletions (h ^–L) and mat2:1 ⁰ plasmids. Two class II mutants turned out to have a typical h⁹⁰ mating-type region with an intact P cassette, but they seem to have a completely defective switching signal at matl:1 (new class V). Mutants of classes I, III, and IV yielded band patterns identical to those of an h ⁹⁰ strain; they obviously have point mutations in the P cassette.     

Mating-type differentiation and mate selection in the homothallic Chlamydomonas monoica

By using combinations of phenotypically-distinct — but sexually-compatible — mutant strains of C. monoica (zym-1, zym-27, and nit-2) and assaying for zygote genotypes in genetically-mixed mating populations (where gametes of the two parental homothallic strains were present at similar frequencies), we have found that matings occur preferentially between cells of the same genotype. Additional support for an hypothesis of non-random mate selection was provided by using an easily-selectable genetic marker (sup-1) to verify the frequent occurrence of matings between cells of identical genotype in populations where the selectable genotype was present at very low relative frequency (10^-2 or 10^-3) in a mixed mating population. Direct evidence for non-random mate selection was obtained by presenting nitrogen-starved cells with limiting nitrate to synchronize gametic differentiation in wild-type strains. Under these conditions, the four, eight, or 16 mitotic daughters released from the same mother sporangium often immediately established mating pairs within the group. Thus successive mitotic divisions of a single mother cell yielded progeny of opposite expressed mating-type.     

Localization of thein vivoexpression of P and F1 fimbriae in chickens experimentally inoculated with pathogenicEscherichia coli

Escherichia colicausing septicemia in poultry often possess F1 (type 1) and/or P fimbriae which may be involved in bacterial colonization and infection. To investigate the expression of these fimbriaein vivo, two pathogenicE. colistrains with different fimbrial profiles, TK3 (fim⁺/pap⁺) and MT78 (fim⁺/pap⁻), were administered to 2-week-old chickens by either the intratracheal or caudal thoracic air sac inoculation route. Antibodies specific for native F1 fimbriae were detected by ELISA and immunodot in the serum of chickens inoculated with either strain MT78 or strain TK3, irrespective of the route of inoculation. Antibodies specific for P fimbriae of serotype F11 were detected by ELISA and immunoblotting in the serum of chickens inoculated by either route with strain TK3. F1, but not P fimbriae, were expressed by bacteria colonizing the trachea of chickens inoculated by the air sac route with strain MT78 or TK3, as demonstrated by examination of frozen tissue sections using immunofluorescence. F1 fimbriae were also expressed by bacteria colonizing the air sacs and lungs, but not by bacteria in the blood or other internal organs, of chickens inoculated with either strain. P fimbriae were expressed by bacteria colonizing the air sacs, lungs, kidney, blood, and pericardial fluid, but not by bacteria colonizing the trachea, of chickens inoculated with strain TK3. Fimbriae-like structures were observed by electron microscopy on bacteria adhering to the epithelial cells of the air sacs of chickens inoculated with strain TK3. These results demonstrate that both strains MT78 and TK3 undergoin vivophase variation with respect to their fimbrial profiles and site of bacterial colonization in different organs of infected chickens and suggest that F1 fimbriae are important for initial bacterial colonization of the upper respiratory tract whereas P fimbriae are important for later stages of the infection.     

Control of the expression of the ADE2 gene of the yeast Saccharomyces cerevisiae

The ADE2 gene encodes AIR-carboxylase which catalyzes the sixth step of the purine biosynthetic pathway in Saccharomyces cerevisiae. We have analyzed the effect of deletions in the promoter region of this gene on the expression of the enzyme using a fusion of the ADE2 gene promoter to the bacterial lacZ gene. Adenine added to the growth medium repressed the expression of the fusion at the level of mRNA. The ADE2-lacZ fusion expression can be slightly activated in response to amino-acid starvation, but only in Gcn4 ⁺ strains and in an adenine-supplemented medium. In the absence of adenine in the medium ADE2 gene expression is derepressed, and neither starvation for histidine nor a gcd1 general control regulatory mutation leads to additional derepression. Our experiments indicate that the ADE2 gene of the purine biosynthetic pathway is under both specific adenine control and the general amino-acid control system. The cis-acting promoter elements mediating both modes of regulation overlap each other and are located around the proximal TGACTC sequence.     

A chloroplast DNA mutational hotspot and gene conversion in a noncoding region near rbcL in the grass family (Poaceae)

The noncoding DNA region of the chloroplast genome, flanked by the genes rbcL and psaI (ORF36), has been sequenced for seven species of the grass family (Poaceae). This region had previously been observed as a hotspot area for length mutations. Sequence comparison reveals that short duplications, probably resulting from slipped-strand mispairing, account for many small length differences between sequences but that major mutational hotspots are localized in three small areas, two of which show potential secondary structure. Mutation in one of these hotspots appears to be a result of more complex recombination events. All seven species contain a pseudogene for rpl23 and evidence is presented that this pseudogene is being maintained by gene conversion with the functional gene. Different transition/transversion biases and AT contents between the pseudogene and the surrounding noncoding sequences are noted. In the subfamily Panicoideae there is a deletion in which almost 1 kb of ancestral sequence, including the 3 end of the rpl23 pseudogene, has been replaced by a non-homologous 60-base sequence of unknown origin. Two other deletions of almost the same region have occurred in the grass family. The deleted noncoding region has mutational and compositional properties similar to the rbcL coding sequence and the rpl23 pseudogene. The three independent deletions, as well as the pattern of mutation in the localized hotspots, indicate that such noncoding DNA may be misleading for studies of phylogenetic inference.     

Loss of <Emphasis Type="Italic">p16</Emphasis><Superscript><Emphasis Type="Italic">INK4A</Emphasis></Superscript> expression is associated with allelic imbalance/loss of heterozygosity of chromosome 9p21 in microdissected synovial sarcomas

Deletions of the short arm of chromosome 9 have been observed in many tumours and cell lines. This chromosomal region is frequently targeted during malignant transformation because it contains at least two known tumour suppressor genes: p16 ^INK4 and p15 ^INK4B . p16 ^INK4A acts as a negative cell cycle regulator by inhibiting G₁ cyclin-dependent kinases that phosphorylate the retinoblastoma protein and therefore block the progression of the cell cycle from G₁ to S phase. The role of p16 ^INK4A in the development of synovial sarcoma has not been comprehensively investigated. Ten samples of synovial sarcomas were examined for allelic imbalance/loss of heterozygosity (AI/LOH) of the 9p region and p16 protein expression. DNA was isolated from microdissected sections of normal and tumour cells, amplified by polymerase chain reaction and analysed for AI/LOH by using six microsatellite markers that map to the 9p region. Immunohistochemistry for p16 expression was done. AI/LOH with at least one microsatellite marker on 9p21 was detected in six of ten samples. The most frequent allelic deletions were observed within the coding sequence of p16 ^INK4A . Loss of p16 immunoreactivity was detected in eight samples, six of which showed evidence of alterations at 9p21 region. These findings suggest a possible role of loss of p16 ^INK4A in the development of synovial sarcoma.     

Gene activation by copy transposition in mating-type switching of a homothallic fission yeast

Summary Mating-type switching in homothallic clones of the fission yeast, Schizosaccharomyces pombe, appears to follow the same route as previously found for mutations from homothallism to heterothallic strains. A copy of mat2-P is transposed to and inserted at mat1, where it functionally replaces the mat1-M allele, and only the mat1 segment is expressed (!) to determine the actual mating type: mat1-M(!) mat2-P = = mat1-P(!) mat2-P. This phenomenon has hitherto been concealed by the high switch-back rate from to observed in homothallic wild-type strains. It only becomes apparent in the presence of mutant switching genes, which retard the rates of mating-type interconversion and temporarily freeze one or the other state of gene activation at the mat1 segment. Mutations to lowered rates of switching are found to map both inside and outside the mating-type locus. While the internal mutations of this kind exert their effect autonomously in the cis-configuration, the unlinked mutations are recessive to their wild-type alleles.We dedicate this paper to Carsten Bresch. The authors first met in the most stimulating scientific environment C. B. had created at the Southwest Center for Advanced Studies.     

Alteration of the cytochrome c oxidase subunit 2 gene in the [exn-5] mutant of Neurospora crassa

Summary The maternally inherited [exn-5] mutant of Neurospora crassa is characterized by its slow-growth rate and deficiency of cytochrome aa ₃ relative to wildtype strains. We have determined the DNA sequence of the COXI and COXII genes of the mutant, which encode subunits 1 and 2 of cytochrome c oxidase, respectively. No changes in the DNA sequence of the COXI gene relative to the corresponding wild-type gene were found. In the region of the COXII gene we found two alterations, one a C to T transition eight base pairs upstream of the coding sequence and the second within the coding sequence for subunit 2 affecting amino acid 27 of the precursor polypeptide (amino acid 15 of the mature polypeptide). The altered codon in [exn-5] specifies an isoleucine residue rather than the wild-type threonine residue. The corresponding position in subunit 2 sequences of all other organisms examined is conserved either as a threonine or a serine residue. Thus, we consider it likely that the mutation directly affecting the coding sequence of the polypeptide is responsible for the [exn-5] phenotype. Analysis of serially passaged heterokaryons constructed between wild-type and [exn-5] shows that both mutations segregate with the [exn-5] phenotype. Examination of mitochondrial translation products in [exn-5] revealed a deficiency of subunit 2, as well as the presence of a polypeptide that corresponds to a previously described precursor of subunit 1 that accumulates in a COXI mutant of N. crassa, [mi-3]. We propose possible relationships between [exn-5], [mi-3], and the nuclear su-1 ^[mi-3] allele, which suppresses both mutations.     

Structure of a Gelasinospora linear plasmid closely related to the kalilo plasmid of Neurospora intermedia

We have determined the complete nucleotide sequence of a linear mitochondrial plasmid from a natural isolate of a homothallic species ofGelasinospora. The plasmid genome is 8231 by long. It carries terminal inverted repeats of 1137 bp. Extending inwards from the terminal repeats are two long open reading frames coding for putative proteins with similarity to DNA and RNA polymerases. These are separated by a short intergenic region. The plasmid sequence shows remarkable similarity to that of theNeurospora intermedia senescence-plasmid kalilo. Overall the two plasmids have a similar genetic organization and are clearly homologous at the sequence level. The main differences are in the intergenic region and in the terminal repeats.