Experimental verification of SNR and parallel imaging improvements using composite arrays

Composite MRI arrays consist of triplets where two orthogonal upright loops are placed over the same imaging area as a standard surface coil. The optimal height of the upright coils is approximately half the width for the 7 cm coils used in this work. Resistive and magnetic coupling is shown to be negligible within each coil triplet. Experimental evaluation of imaging performance was carried out on a Philips 3 T Achieva scanner using an eight‐coil composite array consisting of three surface coils and five upright loops, as well as an array of eight surface coils for comparison. The composite array offers lower overall coupling than the traditional array. The sensitivities of upright coils are complementary to those of the surface coils and therefore provide SNR gains in regions where surface coil sensitivity is low, and additional spatial information for improved parallel imaging performance. Near the surface of the phantom the eight‐channel surface coil array provides higher overall SNR than the composite array, but this advantage disappears beyond a depth of approximately one coil diameter, where it is typically more challenging to improve SNR. Furthermore, parallel imaging performance is better with the composite array compared with the surface coil array, especially at high accelerations and in locations deep in the phantom. Composite arrays offer an attractive means of improving imaging performance and channel density without reducing the size, and therefore the loading regime, of surface coil elements. Additional advantages of composite arrays include minimal SNR loss using root‐sum‐of‐squares combination compared with optimal, and the ability to switch from high to low channel density by merely selecting only the surface elements, unlike surface coil arrays, which require additional hardware. Copyright © 2014 John Wiley & Sons, Ltd.     

Optimizing diffusion MRI acquisition efficiency of rodent brain using simultaneous multislice EPI

Diffusion tensor imaging (DTI) of the brain provides essential information on the white matter integrity and structural connectivity. However, it suffers from a low signal‐to‐noise ratio (SNR) and requires a long scan time to achieve high spatial and/or diffusion resolution and wide brain coverage. With recent advances in parallel and simultaneous multislice (multiband) imaging, the SNR efficiency has been improved by reducing the repetition time (T_R). However, due to the limited number of RF coil channels available on preclinical MRI scanners, simultaneous multislice acquisition has not been practical. In this study, we demonstrate the ability of multiband DTI to acquire high‐resolution data of the mouse brain with 84 slices covering the whole brain in 0.2 mm isotropic resolution without a coil array at 9.4 T. Hadamard‐encoding four‐band pulses were used to acquire four slices simultaneously, with the reduction in the T_R maximizing the SNR efficiency. To overcome shot‐to‐shot phase variations, Hadamard decoding with a self‐calibrated phase was developed. Compared with single‐band DTI acquired with the same scan time, the multiband DTI leads to significantly increased SNR by 40% in the white matter. This SNR gain resulted in reduced variations in fractional anisotropy, mean diffusivity, and eigenvector orientation. Furthermore, the cerebrospinal fluid signal was attenuated, leading to reduced free‐water contamination. Without the need for a high‐density coil array or parallel imaging, this technique enables highly efficient preclinical DTI that will facilitate connectome studies.     

Assessment of the systematic errors caused by diffusion gradient inhomogeneity in DTI‐computer simulations

Diffusion tensor imaging (DTI) is a powerful MRI modality that allows the investigation of the microstructure of tissues both in vivo and noninvasively. Its reliability is strictly dependent on the performance of diffusion‐sensitizing gradients, of which spatial nonuniformity is a known issue in the case of virtually all clinical MRI scanners. The influence of diffusion gradient inhomogeneity on the accuracy of the diffusion tensor imaging was investigated by means of computer simulations supported by an MRI experiment performed at the isocenter and 15 cm away. The DTI measurements of two diffusion phantoms were simulated assuming a nonuniform diffusion‐sensitizing gradient and various levels of noise. Thereafter, the tensors were calculated by two methods: (i) assuming a spatially constant b‐matrix (standard DTI) and (ii) applying the b‐matrix spatial distribution in the DTI (BSD‐DTI) technique, a method of indicating the b‐matrix for each voxel separately using an anisotropic phantom as a standard of diffusion. The average eigenvalues and fractional anisotropy across the homogeneous region of interest were calculated and compared with the expected values. Diffusion gradient inhomogeneity leads to overestimation of the largest eigenvalue, underestimation of the smallest one and thus overestimation of fractional anisotropy. The effect is similar to that caused by noise; however, it could not be corrected by increasing SNR. The MRI measurements, performed using a 3 T clinical scanner, revealed that the split of the eigenvalues measured 15 cm away from the isocenter is significant (up to 25%). The BSD‐DTI calibration allowed the reduction of the measured fractional anisotropy of the isotropic medium from 0.174 to 0.031, suggesting that gradient inhomogeneity was the main cause of this error. For the phantom measured at the isocenter, however, the split was almost not observed; the average eigenvalues were shifted from the expected value by ~ 5%.     

A 22‐channel receive array with Helmholtz transmit coil for anesthetized macaque MRI at 3 T

The macaque monkey is an important model for cognitive and sensory neuroscience that has been used extensively in behavioral, electrophysiological, molecular and, more recently, neuroimaging studies. However, macaque MRI has unique technical differences relative to human MRI, such as the geometry of highly parallel receive arrays, which must be addressed to optimize imaging performance. A 22‐channel receive coil array was constructed specifically for rapid high‐resolution anesthetized macaque monkey MRI at 3 T. A local Helmholtz transmit coil was used for excitation. Signal‐to‐noise ratios (SNRs) and noise amplification for parallel imaging were compared with those of single‐ and four‐channel receive coils routinely used for macaque MRI. The 22‐channel coil yielded significant improvements in SNR throughout the brain. Using this coil, the SNR in peripheral brain was 2.4 and 1.7 times greater than that obtained with single‐ or four‐channel coils, respectively. In the central brain, the SNR gain was 1.5 times that of both the single‐ and four‐channel coils. Finally, the performance of the array for functional, anatomical and diffusion‐weighted imaging was evaluated. For all three modalities, the use of the 22‐channel array allowed for high‐resolution and accelerated image acquisition. Copyright © 2013 John Wiley & Sons, Ltd.     

Tracing superior longitudinal fasciculus connectivity in the human brain using high resolution diffusion tensor tractography

The major language pathways such as superior longitudinal fasciculus (SLF) pathways have been outlined by experimental and diffusion tensor imaging (DTI) studies. The SLF I and some of the superior parietal lobule connections of the SLF pathways have not been depicted by prior DTI studies due to the lack of imaging sensitivity and adequate spatial resolution. In the current study, the trajectory of the SLF fibers has been delineated on five healthy human subjects using diffusion tensor tractography on a 3.0-T scanner at high spatial resolution. We also demonstrate for the first time the trajectory and connectivity of the SLF fibers in relation to other language pathways as well as the superior parietal lobule connections of the language circuit using high spatial resolution DTI in the healthy adult human brain.     

A dedicated eight‐channel receive RF coil array for monkey brain MRI at 9.4 T

The neuroimaging of nonhuman primates (NHPs) realised with magnetic resonance imaging (MRI) plays an important role in understanding brain structures and functions, as well as neurodegenerative diseases and pathological disorders. Theoretically, an ultrahigh field MRI (≥7 T) is capable of providing a higher signal‐to‐noise ratio (SNR) for better resolution; however, the lack of appropriate radiofrequency (RF) coils for 9.4 T monkey MRI undermines the benefits provided by a higher field strength. In particular, the standard volume birdcage coil at 9.4 T generates typical destructive interferences in the periphery of the brain, which reduces the SNR in the neuroscience‐focused cortex region. Also, the standard birdcage coil is not capable of performing parallel imaging. Consequently, extended scan durations may cause unnecessary damage due to overlong anaesthesia. In this work, assisted by numerical simulations, an eight‐channel receive RF coil array was specially designed and manufactured for imaging NHPs at 9.4 T. The structure and geometry of the proposed receive array was optimised with numerical simulations, so that the SNR enhancement region was particularly focused on monkey brain. Validated with rhesus monkey and cynomolgus monkey brain images acquired from a 9.4 T MRI scanner, the proposed receive array outperformed standard birdcage coil with higher SNR, mean diffusivity and fractional anisotropy values, as well as providing better capability for parallel imaging.     

Rat brain MRI at 16.4T using a capacitively tunable patch antenna in combination with a receive array

For MRI at 16.4T, with a proton Larmor frequency of 698 MHz, one of the principal RF engineering challenges is to generate a spatially homogeneous transmit field over a larger volume of interest for spin excitation. Constructing volume coils large enough to house a receive array along with the subject and to maintain the quadrature symmetry for different loading conditions is difficult at this frequency. This calls for new approaches to RF coil design for ultra‐high field MR systems. A remotely placed capacitively tunable patch antenna, which can easily be adjusted to different loading conditions, was used to generate a relatively homogeneous excitation field covering a large imaging volume with a transversal profile similar to that of a birdcage coil. Since it was placed in front of the animal, this created valuable free space in the narrow magnet bore around the subject for additional hardware. To enhance the reception sensitivity, the patch antenna was combined with an actively detunable 3‐channel receive coil array. In addition to increased SNR compared to a quadrature transceive surface coil, we were able to get high quality gradient echo and spin‐echo images covering the whole rat brain. Copyright © 2012 John Wiley & Sons, Ltd.     

应用DTI技术对人脑白质纤维束的初步研究

目的建立扩散张量纤维束成像对人脑白质纤维的显示方法,并应用中国数字化可视人体数据进行对照观察,验证扩散张量成像(DTI)方法的可靠性。方法选择5名健康志愿者进行DTI成像,采用DtiStudio软件进行分析处理,重建出部分各向异性(FA)图、容积比(VR)图、相对各向异性(RA)图、表面扩散系数(ADC)图以及二维彩色张量图。应用中国数字化可视人体数据集断面图像、FA图及彩色FA图进行对照观察,利用fibertracking纤维跟踪软件及3DMRI软件进行三维重建显示脑内主要白质纤维束,辨认脑内白质纤维束的位置、形态。结果应用DTI纤维束成像可以清晰准确地描绘脑白质内主要神经纤维束的解剖图谱,包括联络纤维如弓形纤维、钩束、扣带束、上纵束和下纵束,连合纤维如胼胝体、前连合和穹隆,投射纤维如锥体束、视放射、内侧丘系等。DTI纤维束成像结果与已知解剖知识、中国可视化人体断面图像具有很好的一致性。结论应用DTI纤维束成像可以清晰准确地描绘脑白质内主要神经纤维束的解剖图谱,其结果与中国可视化人体断面图像、已知解剖知识是一致的,应用DTI纤维束成像研究脑内纤维连通性是可靠的。     

DTI at long diffusion time improves fiber tracking

While diffusion‐tensor‐imaging tractography provides remarkable in vivo anatomical connectivity of the central nervous system, the majority of DTI studies to date are predominantly limited to tracking large white‐matter fibers. This study investigated DTI tractography using long diffusion time (t_diff) to improve tracking of thinner fibers in fixed rhesus monkey brains. Stimulated Echo Acquisition Mode (STEAM) sequence on a 3T Siemens TRIO was modified to include a diffusion module. DTI was acquired using STEAM with t_diff of 48 and 192 ms with matched signal‐to‐noise ratios (SNR). Comparisons were also made with the conventional double‐spin echo (DSE) at a short t_diff of 45 ms. Not only did the fractional anisotropy increase significantly with the use of long diffusion time, but directional entropy measures indicated that there was an increased coherence amongst neighboring tensors. Further, the magnitude of the major eigenvector was larger at the t_diff = 192 ms as compared to the short t_diff. Probabilistic connectivity maps at long t_diff showed larger areas of connectivity with the use of long diffusion time, which traversed deeper into areas of low anisotropy. With tractography, it was found that the length of the fibers, increased by almost 10% in the callosal fibers that branch into the paracentral gyrus, the precentral gyrus and the post central gyrus. A similar increase of about 20% was observed in the fibers of the internal capsule. These findings offer encouraging data that DTI at long diffusion time could improve tract tracing of small fibers in areas of low fractional anisotropy (FA), such as at the interfaces of white matter and grey matter. Copyright © 2010 John Wiley & Sons, Ltd.     

Group‐averaged anatomical connectivity mapping for improved human white matter pathway visualisation

Anatomical connectivity mapping (ACM) is a measure of anatomical connectivity obtained by initiating streamline diffusion tractography from all parenchymal voxels and then counting the number of streamlines passing through each voxel of the brain. ACM highlights WM structures that present multiple connections to the rest of the brain but not necessarily strong microstructural orientation coherence. In this study, ACM was used to develop an atlas of the human brain. The ACM template was constructed from 3 T diffusion‐weighted data from 19 healthy adults. To account for multiple diffusion directions in a voxel, a high angular resolution diffusion imaging (HARDI) technique, namely Q‐ball, was used to model diffusion. To bring data from different subjects into a common space, an algorithm for rotating and averaging the principal directions was implemented, which can be generalized to any application requiring algebraic operations on principal directions derived from any HARDI method. ACM from the average dataset was computed and several white matter connections of interest were identified and highlighted. Fractional anisotropy (FA) from standard diffusion tensor modelling was also derived and FA‐modulated colour coded images obtained from the mean tensor were also shown for comparison, highlighting differences and similarities. The ACM template can serve for educational purposes and as future reference for studies based on the evaluation of ACM in subjects affected by neurological and psychiatric disorders. Copyright © 2012 John Wiley & Sons, Ltd.     

Uncompromised MRI of knee cartilage while incorporating sensitive sodium MRI

Sodium imaging is able to assess changes in ion content, linked to glycosaminoglycan content, which is important to guide orthopeadic procedures such as articular cartilage repair. Sodium imaging is ideally performed using double tuned RF coils, to combine high resolution morphological imaging with biochemical information from sodium imaging to assess ion content. The proton image quality of such coils is often harshly degraded, with up to 50% of SNR or severe acceleration loss as compared to single tuned coils. Reasons are that the number of proton receive channels often severely reduced and double tuning will degrade the intrinsic sensitivity of the RF coil on at least one of the nuclei. However, the aim of this work was to implement a double‐tuned sodium/proton knee coil setup without deterioration of the proton signal whilst being able to achieve acquisition of high SNR sodium images. A double‐tuned knee coil was constructed as a shielded birdcage optimized for sodium and compromised for proton. To exclude any compromise, the proton part of the birdcage is used for transmit only and interfaced to RF amplifiers that can fully mitigate the reduced efficiency. In addition, a 15 channel single tuned proton receiver coil was embedded within the double‐resonant birdcage to maintain optimal SNR and acceleration for proton imaging. To validate the efficiency of our coil, the designed coil was compared with the state‐of‐the‐art single‐tuned alternative at 7 T. B1+ corrected SNR maps were used to compare both coils on proton performance and g‐factor maps were used to compare both coils on acceleration possibilities. The newly constructed double‐tuned coil was shown to have comparable proton quality and acceleration possibilities to the single‐tuned alternative while also being able to acquire high SNR sodium images.     

Reduced structural connectivity in Insomnia Disorder

Insomnia Disorder is the most prevalent sleep disorder, and it involves both sleep difficulties and daytime complaints. The neural underpinnings of Insomnia Disorder are poorly understood. Several existing neuroimaging studies focused on local measures and specific regions of interests, which makes it difficult to judge their whole‐brain significance. We therefore here applied a data‐driven approach to assess differences in whole‐brain structural connectivity between adults with Insomnia Disorder and matched controls without sleep complaints. We used diffusion tensor imaging and probabilistic tractography to assess whole‐brain structural connectivity, and examined group differences using network‐based statistics. The results revealed a significant difference in the structural connectivity of the two groups (p = .014). Participants with Insomnia Disorder showed reduced connectivity in a sub‐network that included mainly fronto‐subcortical connections with the insula as a key region. By taking a whole‐brain network perspective, our study enables the integration of previous inconsistent findings. Our results reveal that reduced structural connectivity of the left insula and the connections between frontal and subcortical regions are central neurobiological features of Insomnia Disorder. The importance of these areas for interoception, emotional processing, stress responses and the generation of slow‐wave sleep may help guide the development of neurobiology‐based models of the prevalent condition of Insomnia Disorder.     

Non-invasive mapping of connections between human thalamus and cortex using diffusion imaging

Evidence concerning anatomical connectivities in the human brain is sparse and based largely on limited post-mortem observations. Diffusion tensor imaging has previously been used to define large white-matter tracts in the living human brain, but this technique has had limited success in tracing pathways into gray matter. Here we identified specific connections between human thalamus and cortex using a novel probabilistic tractography algorithm with diffusion imaging data. Classification of thalamic gray matter based on cortical connectivity patterns revealed distinct subregions whose locations correspond to nuclei described previously in histological studies. The connections that we found between thalamus and cortex were similar to those reported for non-human primates and were reproducible between individuals. Our results provide the first quantitative demonstration of reliable inference of anatomical connectivity between human gray matter structures using diffusion data and the first connectivity-based segmentation of gray matter.     

Leading non‐Gaussian corrections for diffusion orientation distribution function

An analytical representation of the leading non‐Gaussian corrections for a class of diffusion orientation distribution functions (dODFs) is presented. This formula is constructed from the diffusion and diffusional kurtosis tensors, both of which may be estimated with diffusional kurtosis imaging (DKI). By incorporating model‐independent non‐Gaussian diffusion effects, it improves on the Gaussian approximation used in diffusion tensor imaging (DTI). This analytical representation therefore provides a natural foundation for DKI‐based white matter fiber tractography, which has potential advantages over conventional DTI‐based fiber tractography in generating more accurate predictions for the orientations of fiber bundles and in being able to directly resolve intra‐voxel fiber crossings. The formula is illustrated with numerical simulations for a two‐compartment model of fiber crossings and for human brain data. These results indicate that the inclusion of the leading non‐Gaussian corrections can significantly affect fiber tractography in white matter regions, such as the centrum semiovale, where fiber crossings are common. Copyright © 2013 John Wiley & Sons, Ltd.     

Noise performance of surface coils for magnetic resonance imaging at 1.5 T

In this paper we analyze the signal-to-noise ratio (SNR) for surface coil magnetic resonance imaging at 1.5 T. We have applied the treatment of Hoult and Lauterbur to determine the factors that most affect coil performance. We have imaged lossy phantoms with 8-, 10-, and 14-cm-diam circular surface coils and compared the results to body and head coil images. Surface coils can improve SNR by a factor of 4 or more for regions close to the surface. Surface coils are effective for regions up to 6 cm deep in the head and about 12 cm deep in the body. Nonuniformity of image intensity is a necessary requirement for improved SNR in surface coils. Coil losses make only a small contribution to image noise compared to tissue losses at 1.5 T. Surface coils need not be placed in close contact with the patient at 1.5 T.     

纤维跟踪技术在模拟显示人脑联络纤维中的应用

目的：应用弥散张量（DTI）纤维跟踪技术来模拟显示脑的联络纤维，探讨结果与经典解剖学知识的一致性。方法：对1个志愿者行单次激发回波平面弥散张量成像，利用纤维跟踪技术来模拟显示其联络纤维，并观察与经典解剖学知识的一致性。结果：通过选择恰当的感兴趣区，各向异性阈值、角度阈值、步长和体素内采样数目等参数，利用弥散张量纤维跟踪技术可模拟显示扣带、上枕额束、下枕额束、钩束、下纵束等联络纤维。结论：利用弥散张量纤维跟踪技术可模拟显示人脑联络纤维，且与经典解剖学有高度一致性，是在活体中研究人脑联络纤维的一种新方法。     

Mapping of the mouse olfactory system with manganese-enhanced magnetic resonance imaging and diffusion tensor imaging

As the power of studying mouse genetics and behavior advances, research tools to examine systems level connectivity in the mouse are critically needed. In this study, we compared statistical mapping of the olfactory system in adult mice using manganese-enhanced MRI (MEMRI) and diffusion tensor imaging (DTI) with probabilistic tractography. The primary goal was to determine whether these complementary techniques can determine mouse olfactory bulb (OB) connectivity consistent with known anatomical connections. For MEMRI, 3D T1-weighted images were acquired before and after bilateral nasal administration of MnCl₂ solution. Concomitantly, high-resolution diffusion-tensor images were obtained ex vivo from a second group of mice and processed with a probabilistic tractography algorithm originating in the OB. Incidence maps were created by co-registering and overlaying data from the two scan modalities. The resulting maps clearly show pathways between the OB and amygdala, piriform cortex, caudate putamen, and olfactory cortex in both the DTI and MEMRI techniques that are consistent with the known anatomical connections. These data demonstrate that MEMRI and DTI are complementary, high-resolution neuroimaging tools that can be applied to mouse genetic models of olfactory and limbic system connectivity.     

Fast low‐angle shot diffusion tensor imaging with stimulated echo encoding in the muscle of rabbit shank

In the past, spin‐echo (SE) echo planar imaging(EPI)‐based diffusion tensor imaging (DTI) has been widely used to study the fiber structure of skeletal muscles in vivo. However, this sequence has several shortcomings when measuring restricted diffusion in small animals, such as its sensitivity to susceptibility‐related distortions and a relatively short applicable diffusion time. To address these limitations, in the current work, a stimulated echo acquisition mode (STEAM) MRI technique, in combination with fast low‐angle shot (FLASH) readout (turbo‐STEAM MRI), was implemented and adjusted for DTI in skeletal muscles. Signal preparation using stimulated echoes enables longer effective diffusion times, and thus the detection of restricted diffusion within muscular tissue with intracellular distances up to 100 µm. Furthermore, it has a reduced penalty for fast T₂ muscle signal decay, but at the expense of 50% signal loss compared with a SE preparation. Turbo‐STEAM MRI facilitates high‐resolution DTI of skeletal muscle without introducing susceptibility‐related distortions. To demonstrate its applicability, we carried out rabbit in vivo measurements on a human whole‐body 3 T scanner. DTI parameters of the shank muscles were extracted, including the apparent diffusion coefficient, fractional anisotropy, eigenvalues and eigenvectors. Eigenvectors were used to calculate maps of structural parameters, such as the planar index and the polar coordinates θ and ? of the largest eigenvector. These parameters were compared between three muscles. θ and ? showed clear differences between the three muscles, reflecting different pennation angles of the underlying fiber structures. Fiber tractography was performed to visualize and analyze the architecture of skeletal pennate muscles. Optimization of tracking parameters and utilization of T₂‐weighted images for improved muscle boundary detection enabled the determination of additional parameters, such as the mean fiber length. The presented results support the applicability of turbo‐STEAM MRI as a promising method for quantitative DTI analysis and fiber tractography in skeletal muscles. Copyright © 2013 John Wiley & Sons, Ltd.     

DTI of human skeletal muscle: the effects of diffusion encoding parameters,signal‐to‐noise ratio and T2 on tensor indices and fiber tracts

In this study, we have performed simulations to address the effects of diffusion encoding parameters, signal‐to‐noise ratio (SNR) and T₂ on skeletal muscle diffusion tensor indices and fiber tracts. Where appropriate, simulations were corroborated and validated by in vivo diffusion tensor imaging (DTI) of human skeletal muscle. Specifically, we have addressed: (i) the accuracy and precision of the diffusion parameters and eigenvectors at different SNR levels; (ii) the effects of the diffusion gradient direction encoding scheme; (iii) the optimal b value for diffusion tensor estimation; (iv) the effects of changes in skeletal muscle T₂; and, finally, the influence of SNR on fiber tractography and derived (v) fiber lengths, (vi) pennation angles and (vii) fiber curvatures. We conclude that accurate DTI of skeletal muscle requires an SNR of at least 25, a b value of between 400 and 500 s/mm², and data acquired with at least 12 diffusion gradient directions homogeneously distributed on half a sphere. Furthermore, for DTI studies focusing on skeletal muscle injury or pathology, apparent changes in the diffusion parameters need to be interpreted with great care in view of the confounding effects of T₂, particularly for moderate to low SNR values. Copyright © 2013 John Wiley & Sons, Ltd.     

联合应用VBM方法和DTI技术对精神分裂症小脑结构的研究

目的分别应用磁共振扩散张量成像技术(DTI)和基于体素的形态分析法(VBM)对精神分裂症患者小脑中脚和上脚白质纤维情况与小脑的灰白质密度进行初步探究。方法应用GESigna3.0TMRI扫描仪,分别对按照精神分裂症诊断标准确诊的14例患者及14名健康对照者行DTI和三维快速扰相梯度翻转恢复(3D-SPGR)序列扫描,检测双侧小脑中脚和上脚感兴趣区的各向异性分数值(FA)及小脑灰白质密度,应用成组t检验对病例组和正常对照组的以上数据进行比较。结果精神分裂症病例组左侧小脑上脚的FA值较正常对照组显著降低(<0.05),小脑局部脑区的灰质密度与正常组相比发生了显著改变,差异区域主要位于小脑前叶(<0.05),小脑的白质密度与正常组相比未发现显著改变脑区。结论 DTI技术和VBM方法的联合应用对精神分裂症患者的研究有着重要的应用价值。