Detection of prostate cancer by integration of line-scan diffusion, T2-mapping and T2-weighted magnetic resonance imaging; a multichannel statistical classifier

A multichannel statistical classifier for detecting prostate cancer was developed and validated by combining information from three different magnetic resonance (MR) methodologies: T2-weighted, T2-mapping, and line scan diffusion imaging (LSDI). From these MR sequences, four different sets of image intensities were obtained: T2-weighted (T2W) from T2-weighted imaging, Apparent Diffusion Coefficient (ADC) from LSDI, and proton density (PD) and T2 (T2 Map) from T2-mapping imaging. Manually segmented tumor labels from a radiologist, which were validated by biopsy results, served as tumor "ground truth." Textural features were extracted from the images using co-occurrence matrix (CM) and discrete cosine transform (DCT). Anatomical location of voxels was described by a cylindrical coordinate system. A statistical jack-knife approach was used to evaluate our classifiers. Single-channel maximum likelihood (ML) classifiers were based on 1 of the 4 basic image intensities. Our multichannel classifiers: support vector machine (SVM) and Fisher linear discriminant (FLD), utilized five different sets of derived features. Each classifier generated a summary statistical map that indicated tumor likelihood in the peripheral zone (PZ) of the prostate gland. To assess classifier accuracy, the average areas under the receiver operator characteristic (ROC) curves over all subjects were compared. Our best FLD classifier achieved an average ROC area of 0.839(+/-0.064), and our best SVM classifier achieved an average ROC area of 0.761(+/-0.043). The T2W ML classifier, our best single-channel classifier, only achieved an average ROC area of 0.599(+/-0.146). Compared to the best single-channel ML classifier, our best multichannel FLD and SVM classifiers have statistically superior ROC performance (P=0.0003 and 0.0017, respectively) from pairwise two-sided t-test. By integrating the information from multiple images and capturing the textural and anatomical features in tumor areas, summary statistical maps can potentially aid in image-guided prostate biopsy and assist in guiding and controlling delivery of localized therapy under image guidance.     

根据磁共振T2加权影像特征预测乳腺癌组织学分级

组织学分级是乳腺癌的重要预后指标。探讨磁共振(MRI)T2加权影像特征与乳腺癌组织学分级的关联性, 可为术前预测乳腺癌组织学分级提供有意义的参考作用。回顾性分析167例术前行MRI检查并经病理诊断为浸润性乳腺癌患者, 其中组织学分级Ⅱ级和Ⅲ级的分别为72例和95例。利用计算机半自动方法, 分割患者乳腺磁共振T2加权影像的病灶区域, 并对其提取包括纹理特征和形态特征的40维影像特征。采用留一法交叉验证方法(LOOCV), 通过统计学方法分析比较影像特征在组织分级Ⅱ级和Ⅲ级组间的差异, 并设计多变量分类预测模型。绘制受试者工作特征曲线(ROC), 并计算对应曲线下的面积(AUC);计算敏感性、特异性、F1-Measure等指标, 对预测模型进行综合评估。对每一维特征进行单变量逻辑回归分析, 在低分级和高分级组间进行统计检验分析(t检验)。形态特征中最优单特征为病灶半径, AUC值为0.742(P<0.05);纹理特征中最优特征为大面积高灰度级增强, AUC值为0.742(P<0.05)。设计多元逻辑回归(MLR)、支持向量机(SVM)、多任务学习(MTL)等3种分类器, 预测乳腺癌组织学分级, 其AUC值分别为0.767±0.036、0.772±0.036和0.771±0.037, 对应特异性分别为0.667、0.653、0.708, 灵敏度分别为0.747、0.737、0.684。研究表明, 乳腺癌的T2加权影像特征在一定程度上反映其组织学分级, 对乳腺癌的预后判断具有潜在价值。     

基于定量影像组学的乳腺肿瘤良恶性诊断

乳腺癌是女性致死率最高的恶性肿瘤之一。为提高诊断效率,提供给医生更加客观和准确的诊断结果。借助影像组学的方法,利用公开数据集BreaKHis中82例患者的乳腺肿瘤病理图像,提取乳腺肿瘤病理图像的灰度特征、Haralick纹理特征、局部二值模式(LBP)特征和Gabor特征共139维影像组学特征,并用主成分分析(PCA)对影像组学特征进行降维,然后利用随机森林(RF)、极限学习机(ELM)、支持向量机(SVM)、k最近邻(kNN)等4种不同的分类器构建乳腺肿瘤良恶性的诊断模型,并对上述不同的特征集进行评估。结果表明,基于支持向量机的影像组学特征的分类效果最好,准确率能达到88.2%,灵敏性达到86.62%,特异性达到89.82%。影像组学方法可为乳腺肿瘤良恶性预测提供一种新型的检测手段,使乳腺肿瘤良恶性临床诊断的准确率得到很大提升。     

Brain volumetry: an active contour model-based segmentation followed by SVM-based classification

In this paper a novel automatic approach to identify brain structures in magnetic resonance imaging (MRI) is presented for volumetric measurements. The method is based on the idea of active contour models and support vector machine (SVM) classifiers. The main contributions of the presented method are effective modifications on brain images for active contour model and extracting simple and beneficial features for the SVM classifier. The segmentation process starts with a new generation of active contour models, i.e., vector field convolution (VFC) on modified brain images. VFC results are brain images with the least non-brain regions which are passed on to the SVM classification. The SVM features are selected according to the structure of brain tissues, gray matter (GM), white matter (WM), and cerebrospinal fluid (CSF). SVM classifiers are trained for each brain tissue based on the set of extracted features. Although selected features are very simple, they are both sufficient and tissue separately effective. Our method validation is done using the gold standard brain MRI data set. Comparison of the results with the existing algorithms is a good indication of our approach's success.     

Temporal Analysis of Tumor Heterogeneity and Volume for Cervical Cancer Treatment Outcome Prediction: Preliminary Evaluation

In this paper, we present a method of quantifying the heterogeneity of cervical cancer tumors for use in radiation treatment outcome prediction. Features based on the distribution of masked wavelet decomposition coefficients in the tumor region of interest (ROI) of temporal dynamic contrast-enhanced magnetic resonance imaging (DCE-MRI) studies were used along with the imaged tumor volume to assess the response of the tumors to treatment. The wavelet decomposition combined with ROI masking was used to extract local intensity variations in the tumor. The developed method was tested on a data set consisting of 23 patients with advanced cervical cancer who underwent radiation therapy; 18 of these patients had local control of the tumor, and five had local recurrence. Each patient participated in two DCE-MRI studies: one prior to treatment and another early into treatment (2–4 weeks). An outcome of local control or local recurrence of the tumor was assigned to each patient based on a posttherapy follow-up at least 2 years after the end of treatment. Three different supervised classifiers were trained on combinational subsets of the full wavelet and volume feature set. The best-performing linear discriminant analysis (LDA) and support vector machine (SVM) classifiers each had mean prediction accuracies of 95.7%, with the LDA classifier being more sensitive (100% vs. 80%) and the SVM classifier being more specific (100% vs. 94.4%) in those cases. The K-nearest neighbor classifier performed the best out of all three classifiers, having multiple feature sets that were used to achieve 100% prediction accuracy. The use of distribution measures of the masked wavelet coefficients as features resulted in much better predictive performance than those of previous approaches based on tumor intensity values and their distributions or tumor volume alone.     

Multiclass cancer classification by using fuzzy support vector machine and binary decision tree with gene selection

We investigate the problems of multiclass cancer classification with gene selection from gene expression data. Two different constructed multiclass classifiers with gene selection are proposed, which are fuzzy support vector machine (FSVM) with gene selection and binary classification tree based on SVM with gene selection. Using F test and recursive feature elimination based on SVM as gene selection methods, binary classification tree based on SVM with F test, binary classification tree based on SVM with recursive feature elimination based on SVM, and FSVM with recursive feature elimination based on SVM are tested in our experiments. To accelerate computation, preselecting the strongest genes is also used. The proposed techniques are applied to analyze breast cancer data, small round blue-cell tumors, and acute leukemia data. Compared to existing multiclass cancer classifiers and binary classification tree based on SVM with F test or binary classification tree based on SVM with recursive feature elimination based on SVM mentioned in this paper, FSVM based on recursive feature elimination based on SVM can find most important genes that affect certain types of cancer with high recognition accuracy.     

基于ABC-SVM的运动想象脑电信号模式分类

为了提高运动想象脑电信号分类的准确率,针对传统支持向量机（SVM）分类方法在脑电信号处理中存在寻优繁 琐、工作量大和分类正确率低等问题,本研究提出一种基于人工蜂群（ABC）算法优化SVM的分类识别方法。首先利用正 则化共空间模式对脑电信号进行特征提取,然后利用ABC算法优化SVM的惩罚因子和核参数,最后利用提取的右手和 右脚两类脑电信号样本特征对优化后的SVM进行训练和分类测试。实验结果表明ABC-SVM分类器提高了脑电信号分 类的准确率,比传统的SVM分类器准确率高出2.5%,证明该算法的可行性和较高准确性。     

Comparative evaluation of support vector machine classification for computer aided detection of breast masses in mammography

False positive (FP) marks represent an obstacle for effective use of computer-aided detection (CADe) of breast masses in mammography. Typically, the problem can be approached either by developing more discriminative features or by employing different classifier designs. In this paper, the usage of support vector machine (SVM) classification for FP reduction in CADe is investigated, presenting a systematic quantitative evaluation against neural networks, k-nearest neighbor classification, linear discriminant analysis and random forests. A large database of 2516 film mammography examinations and 73 input features was used to train the classifiers and evaluate for their performance on correctly diagnosed exams as well as false negatives. Further, classifier robustness was investigated using varying training data and feature sets as input. The evaluation was based on the mean exam sensitivity in 0.05-1 FPs on normals on the free-response receiver operating characteristic curve (FROC), incorporated into a tenfold cross validation framework. It was found that SVM classification using a Gaussian kernel offered significantly increased detection performance (P = 0.0002) compared to the reference methods. Varying training data and input features, SVMs showed improved exploitation of large feature sets. It is concluded that with the SVM-based CADe a significant reduction of FPs is possible outperforming other state-of-the-art approaches for breast mass CADe.     

Physical activities recognition from ambulatory ECG signals using neuro-fuzzy classifiers and support vector machines

Abstract

The use of wearable recorders for long-term monitoring of physiological parameters has increased in the last few years. The ambulatory electrocardiogram (A-ECG) signals of five healthy subjects with four body movements or physical activities (PA)—left arm up down, right arm up down, waist twisting and walking—have been recorded using a wearable ECG recorder. The classification of these four PAs has been performed using neuro-fuzzy classifier (NFC) and support vector machines (SVM). The PA classification is based on the distinct, time-frequency features of the extracted motion artifacts contained in recorded A-ECG signals. The motion artifacts in A-ECG signals have been separated first by the discrete wavelet transform (DWT) and the time–frequency features of these motion artifacts have then been extracted using the Gabor transform. The Gabor energy feature vectors have been fed to the NFC and SVM classifiers. Both the classifiers have achieved a PA classification accuracy of over 95% for all subjects.     

Fuzzy support vector machine for classification of EEG signals using wavelet-based features

Translation of electroencephalographic (EEG) recordings into control signals for brain–computer interface (BCI) systems needs to be based on a robust classification of the various types of information. EEG-based BCI features are often noisy and likely to contain outliers. This contribution describes the application of a fuzzy support vector machine (FSVM) with a radial basis function kernel for classifying motor imagery tasks, while the statistical features over the set of the wavelet coefficients were extracted to characterize the time–frequency distribution of EEG signals. In the proposed FSVM classifier, a low fraction of support vectors was used as a criterion for choosing the kernel parameter and the trade-off parameter, together with the membership parameter based solely on training data. FSVM and support vector machine (SVM) classifiers outperformed the winner of the BCI Competition 2003 and other similar studies on the same Graz dataset, in terms of the competition criterion of the mutual information (MI), while the FSVM classifier yielded a better performance than the SVM approach. FSVM and SVM classifiers perform much better than the winner of the BCI Competition 2005 on the same Graz dataset for the subject O3 according to the competition criterion of the maximal MI steepness, while the FSVM classifier outperforms the SVM method. The proposed FSVM model has potential in reducing the effects of noise or outliers in the online classification of EEG signals in BCIs.     

Computer aided diagnosis system for Alzheimer disease using brain diffusion tensor imaging features selected by Pearson's correlation

The aim of this paper is to obtain discriminant features from two scalar measures of Diffusion Tensor Imaging (DTI) data, Fractional Anisotropy (FA) and Mean Diffusivity (MD), and to train and test classifiers able to discriminate Alzheimer's Disease (AD) patients from controls on the basis of features extracted from the FA or MD volumes. In this study, support vector machine (SVM) classifier was trained and tested on FA and MD data. Feature selection is done computing the Pearson's correlation between FA or MD values at voxel site across subjects and the indicative variable specifying the subject class. Voxel sites with high absolute correlation are selected for feature extraction. Results are obtained over an on-going study in Hospital de Santiago Apostol collecting anatomical T1-weighted MRI volumes and DTI data from healthy control subjects and AD patients. FA features and a linear SVM classifier achieve perfect accuracy, sensitivity and specificity in several cross-validation studies, supporting the usefulness of DTI-derived features as an image-marker for AD and to the feasibility of building Computer Aided Diagnosis systems for AD based on them.     

Development of an Automatic Classification System for Differentiation of Obstructive Lung Disease using HRCT

The motivation is to introduce new shape features and optimize the classifier to improve performance of differentiating obstructive lung diseases, based on high-resolution computerized tomography (HRCT) images. Two hundred sixty-five HRCT images from 82 subjects were selected. On each image, two experienced radiologists selected regions of interest (ROIs) representing area of severe centrilobular emphysema, mild centrilobular emphysema, bronchiolitis obliterans, or normal lung. Besides 13 textural features, additional 11 shape features were employed to evaluate the contribution of shape features. To optimize the system, various ROI size (16 × 16, 32 × 32, and 64 × 64 pixels) and other classifier parameters were tested. For automated classification, the Bayesian classifier and support vector machine (SVM) were implemented. To assess cross-validation of the system, a five-folding method was used. In the comparison of methods employing only the textural features, adding shape features yielded the significant improvement of overall sensitivity (7.3%, 6.1%, and 4.1% in the Bayesian and 9.1%, 7.5%, and 6.4% in the SVM, in the ROI size 16 × 16, 32 × 32, 64 × 64 pixels, respectively; t test, P < 0.01). After feature selection, most of cluster shape features were survived ,and the feature selected set shows better performance of the overall sensitivity (93.5 ± 1.0% in the SVM in the ROI size 64 × 64 pixels; t test, P < 0.01). Adding shape features to conventional texture features is much useful to improve classification performance of obstructive lung diseases in both Bayesian and SVM classifiers. In addition, the shape features contribute more to overall sensitivity in smaller ROI.     

基于机器学习的心音识别分类研究

心音信号可反映心脏的病理信息,是诊断心脏健康的重要依据之一。本文首先从心音信号提取时频域、梅尔倒谱系数等145个特征作为机器学习的输入数据集,然后在随机森林、LightGBM、XGBoost、GBDT、SVM共5种分类器中选出效果最佳分类器与递归特征消除算法结合进行数据挖掘,找出重要特征集并对其分类效果做比较与分析,最后运用Stacking模型融合方法优化模型。数据挖掘特征子集比同数量特征子集在准确率、召回率、精确率、F1值上分别提高了33.51%、14.54%、20.61%、24.04%;采用LightGBM和SVM模型融合可将F1值提高至92.6%。本文提出了一种有效的心音识别分类方法,挖掘出心音最重要的8个特征,为临床诊断提供参考。     

基于磁共振影像组学特征分类胶质瘤和单发性脑转移瘤

目的 应用临床常规3T磁共振T1、T2和液体衰减反转恢复(FLAIR)成像分析胶质瘤和单发性脑转移瘤的影像组学特征差异,探讨肿瘤区域不同方向以不同角度构建的纹理特征对区别两种肿瘤的意义,寻找一种可行的胶质瘤和单发性脑转移瘤高精度分类方法。 方法 43例胶质瘤患者和年龄、性别匹配的45例单发性脑转移瘤患者,从肿瘤区域轴状面、冠状面和矢状面方向的每1层构建不同角度的影像组学灰度共生矩阵,计算相应的纹理空间关系特征（包括对比度、相关性、能量和同质性）;使用Wilcoxon秩和检验选择特征并降低冗余;所选特征经SVM线性核分类器分类,实现两种肿瘤的诊断。 结果 在分类胶质瘤和单发性脑转移瘤时,多模态多方向组合特征的精确性、召回率、F1分值和准确性分别是0.8857、0.9114、0.8944和0.8922;该组合特征在SVM线性核分类器下的受试者工作特征曲线下面积为0.9602;并将45例单发性脑转移瘤患者中的40例正确分类;43例胶质瘤患者中的39例正确分类。 结论 肿瘤区域的多模态多方向组合特征经SVM线性核分类器分类,可以鉴别胶质瘤和单发性脑转移瘤,这可作为第2意见,有效协助医生做出诊断。     

Classification of Breast Masses Using Selected Shape,Edge-sharpness,and Texture Features with Linear and Kernel-based Classifiers

Breast masses due to benign disease and malignant tumors related to breast cancer differ in terms of shape, edge-sharpness, and texture characteristics. In this study, we evaluate a set of 22 features including 5 shape factors, 3 edge-sharpness measures, and 14 texture features computed from 111 regions in mammograms, with 46 regions related to malignant tumors and 65 to benign masses. Feature selection is performed by a genetic algorithm based on several criteria, such as alignment of the kernel with the target function, class separability, and normalized distance. Fisher's linear discriminant analysis, the support vector machine (SVM), and our strict two-surface proximal (S2SP) classifier, as well as their corresponding kernel-based nonlinear versions, are used in the classification task with the selected features. The nonlinear classification performance of kernel Fisher's discriminant analysis, SVM, and S2SP, with the Gaussian kernel, reached 0.95 in terms of the area under the receiver operating characteristics curve. The results indicate that improvement in classification accuracy may be gained by using selected combinations of shape, edge-sharpness, and texture features.     

Spike sorting based on multi-class support vector machine with superposition resolution

A new spike sorting method based on the support vector machine (SVM) is proposed to resolve the superposition problem. The spike superposition is generally resolved by the template matching. Previous template matching methods separate the spikes through linear classifiers. The classification performance is severely influenced by the background noise included in spike trains. The nonlinear classifiers with high generation ability are required to deal with the task. A multi-class SVM classifier is therefore applied to separate the spikes, which contains several binary SVM classifiers. Every binary SVM classifier corresponding to one spike class is used to identify the single and superposition spikes. The superposition spikes are decomposed through template extraction. The experimental results on the simulated and real data demonstrate the utility of the proposed method.     

Machine learning approach for obstructive sleep apnea screening using brain diffusion tensor imaging

Patients with obstructive sleep apnea (OSA) show autonomic, mood, cognitive, and breathing dysfunctions that are linked to increased morbidity and mortality, which can be improved with early screening and intervention. The gold standard and other available methods for OSA diagnosis are complex, require whole-night data, and have significant wait periods that potentially delay intervention. Our aim was to examine whether using faster and less complicated machine learning models, including support vector machine (SVM) and random forest (RF), with brain diffusion tensor imaging (DTI) data can classify OSA from healthy controls. We collected two DTI series from 59 patients with OSA [age: 50.2 ± 9.9 years; body mass index (BMI): 31.5 ± 5.6 kg/m²; apnea-hypopnea index (AHI): 34.1 ± 21.2 events/h 23 female] and 96 controls (age: 51.8 ± 9.7 years; BMI: 26.2 ± 4.1 kg/m²; 51 female) using a 3.0-T magnetic resonance imaging scanner. Using DTI data, mean diffusivity maps were calculated from each series, realigned and averaged, normalised to a common space, and used to conduct cross-validation for model training and selection and to predict OSA. The RF model showed 0.73 OSA and controls classification accuracy and 0.85 area under the curve (AUC) value on the receiver-operator curve. Cross-validation showed the RF model with comparable fitting over SVM for OSA and control data (SVM; accuracy, 0.77; AUC, 0.84). The RF ML model performs similar to SVM, indicating the comparable statistical fitness to DTI data. The findings indicate that RF model has similar AUC and accuracy over SVM, and either model can be used as a faster OSA screening tool for subjects having brain DTI data.     

Automated recognition of patients with obstructive sleep apnoea using wavelet-based features of electrocardiogram recordings

Patients with obstructive sleep apnoea syndrome (OSAS) are at increased risk of developing hypertension and other cardiovascular diseases. This paper explores the use of support vector machines (SVMs) for automated recognition of patients with OSAS types (±) using features extracted from nocturnal ECG recordings, and compares its performance with other classifiers. Features extracted from wavelet decomposition of heart rate variability (HRV) and ECG-derived respiration (EDR) signals of whole records (30 learning sets from physionet) are presented as inputs to train the SVM classifier to recognize OSAS± subjects. The optimal SVM parameter set is then determined by using a leave-one-out procedure. Independent test results have shown that an SVM using a subset of a selected combination of HRV and EDR features correctly recognized 30/30 of physionet test sets. In comparison, classification performance of K-nearest neighbour, probabilistic neural network, and linear discriminant classifiers on test data was lower. These results, therefore, demonstrate considerable potential in applying SVM in ECG-based screening and can aid sleep specialists in the initial assessment of patients with suspected OSAS.     

EEG signals classification of epileptic patients via feature selection and voting criteria in intelligent method

Epileptic disease can be diagnosed by using intelligent methods on the Electroencephalograph (EEG) signals. In this paper, wavelet packet transform (WPT) was used in each of the frequency bands and wavelet coefficients were obtained, then the energy and entropy function was done on the wavelet coefficients and used as initial feature vectors. In the next step, eight and 15 features from 30 initial energy and entropy features were selected as the final features because their receiver operating characteristic (ROC) curve areas were higher than others. There were seven classifier inputs. These seven classifiers consisted of four artificial neural networks (ANN) with different structures, support vector machines (SVM), K-nearest neighbours (KNN) and a hybrid network. Each classifier was trained by 0.5, 0.8 and 0.9 EEG signals. After the training process, a fusion network based on a voting criteria was used to make the algorithm robust against the possible changes in each classifier and increase the classification accuracy. Finally, the algorithm was tested by other EEG signals. As a result, normal and epileptic classes were detected with total classification accuracy of 99–100%.