Six bovine cosmid-derived microsatellites mapping different syntenic groups are fluorescence in situ hybridization mapped to six river buffalo chromosomes

Six bovine cosmid-derived microsatellites (IDVGA53, BTA3/U6; IDVGA61, U13; IDVGA41, BTA12/U27; IDVGA32, BTA15/U19; IDVGA59, BTA26/U26 and IDVGA71, U8), previously assigned to cattle chromosomes, were FISH-mapped to river buffalo chromosomes (BBU) 6q15, 8q34, 13q15, 16q25, 23q22 and 24q13 respectively. Sequential FISH/RBA-banding allowed the precise identification of chromosomes and localization of probe-signals on chromosome bands. These localizations allowed us to assign indirectly, for the first time, six bovine syntenic groups to river buffalo chromosomes, thereby extending its physical map. The localization of IDVGA71 (bovine U8) to the marker BBU24 adds further information to resolve definitively cattle chromosome ambiguities involving cattle chromosomes 25, 27 and 29.This revised version was published online in November 2005 with corrections to the Cover Date.     

An extended river buffalo (Bubalus bubalis, 2n = 50) cytogenetic map: assignment of 68 autosomal loci by FISH-mapping and R-banding and comparison with human chromosomes

We report an extended river buffalo (Bubalus bubalis, 2n = 50; BBU) cytogenetic map including 388 loci, of which 68 have been FISH-mapped on autosomes in the present study. Ovine and caprine BAC clones containing both type I loci (known genes) and type II loci (simple sequence repeats (SRs), microsatellite marker, sequence-tagged sites (STSs)), previously assigned to sheep chromosomes, have been localized on R-banded river buffalo chromosomes (BBU), which expands the cytogenetic map of this important domestic species and increases our knowledge of the physical organization of its genome. The loci mapped in the present study correspond to loci already localized on homoeologous cattle (and sheep) chromosomes and chromosome bands, further confirming the high degree of chromosome homoeologies among bovids. The comparison of the integrated cytogenetic maps of BBU2p/BBU10 and BBU5p/BBU16 with those of human chromosomes (HSA) 6 and 11, respectively, identified, at least, nine conserved chromosome segments in each case and complex rearrangements differentiating river buffalo (and cattle) and human chromosomes.     

Comparative FISH-mapping of villin (VIL) gene in river buffalo, sheep and goat chromosomes

Two genomic clones of the villin (VIL) gene were independently hybridized on river buffalo (Bubalus bubalis, BBU), sheep (Ovis aries, OAR) and goat (Capra hircus, CHI) chromosomes by using sequential fluorescence in situ hybridization (FISH) and R-banding (RBP- and RBA-banding). Clear hybridization signals revealed that VIL is located in BBU 2q33, OAR 2q33 and CHI 2q33. These chromosomes and chromosome bands are believed to be homologous and the VIL locus is the same as that previously found on cattle chromosome 2q43. VIL localization in these three species allows us tentatively to assign all cattle U17 to BBU and CHI 2q and to extend the physical map to OAR 2q.This revised version was published online in November 2005 with corrections to the Cover Date.     

Isolation,characterization, and interaction of lignin-degrading bacteria from rumen of buffalo (Bubalus bubalis)

The purpose of this study was to isolate lignin-degrading bacteria from buffalo rumen and to explore their interactions further. Using lignin as the carbon source, three bacteria, B-04 (Ochrobactrum pseudintermedium), B-11 (Klebsiella pneumoniae), and B-45 (Bacillus sonorensis), which have shown lignin degradation potential, were successfully isolated and identified from the rumen fluid of buffalo by colony morphology, 16S ribosomal RNA gene sequencing, and biochemical and physiological analyses. The degradation rates of lignin were determined, and the maximum values were 4.86%, 11.1%, and 7.68% for B-04, B-11, and B-45, respectively. The maximum laccase activities were 0.65, 0.93, and 1.15 U/ml, while the maximum lignin peroxidase activities were 5.72, 8.29, and 18.69 U/ml, respectively. Pairwise interaction studies showed inhibitory interaction between B-04 and B-45, inhibitory interaction between B-04 and B-11, and symbiotic interaction between B-11 and B-45. This is the first report on the lignin degradation ability of bacteria isolated from the buffalo's rumen, which provides a new understanding for revealing the mechanism of roughage tolerance of buffalo.     

Onset and sequence of RBA-band replication on the inactive X-chromosomes of cattle (Bos taurus L.), river buffalo (Bubalus bubalis L.) and goat (Capra hircus L.)

This study was undertaken to provide cytogenetic information about onset and sequence of RBA-band replication on the inactive X-chromosomes of cattle, river buffalo and goat. Blood cultures were synchronized overnight with thymidine after 48 hours of growth. The cell block was released with fresh medium and the cells allowed to grow in the presence of BrdU and H33258 for 1, 2, 4, 6, 8, 10, 12 and 14 hours, including 20 minutes colcemide. Results show that: (a) the onset of RBA-banding replication was 12 hours before mitosis in cattle and river buffalo, 14 hours in the goat; (b) the replication process was still on in cattle and river buffalo one hour before mitosis, whereas it was off in the goat; consequently the length of the G2 phase was less than one hour in cattle and river buffalo and one hour or slightly longer in the goat; (c) the first band undergoing replication was identified as band Xq31 in cattle, homologous to band Xq34-36 in river buffalo and Xq24 in the goat; (d) the second replicating band was the Xp22 in cattle, homologous to band Xq21 in river buffalo and Xq34 in the goat, respectively; (e) the sequence of RBA-band replication was quite similar between cattle and river buffalo, but reversed in the goat, due to the wide chromosomal rearrangements which differentiated the X-chromosome of Caprinae from that of Bovinae.     

Localization of uridine monophosphate synthase (UMPS) gene to river buffalo chromosomes by FISH

Uridine monophosphate synthase plays an important role in pyrimidine synthesis, converting orotic acid to uridine 5 monophosphate. In cattle,UMPS deficiency is inherited as a monogenic autosomal recessive trait. While heterozygous carriers are phenotypically normal, homozygotes are lethalin utero (Shankset al. 1992).UMPS has been mapped to human chromosome 3q13 (Qumsiyehet al. 1989), sheep chromosome 1q (Burkinet al. 1993) and cattle chromosome 1q31 (Ryanet al. 1994). In the present study we used a cattle genomic probe to localizeUMPS to river buffalo chromosomes by fluorescencein situ hybridization.     

FISH mapping of bovine zinc finger protein 164 (U23) and X81804 (U9) genes to river buffalo chromosomes 17 and 18 respectively

There is not abstractThis revised version was published online in November 2005 with corrections to the Cover Date.