A new locus for autosomal dominant congenital cataracts maps to chromosome 3

PURPOSE: To map a gene for cataracts in a family with congenital nuclear and sutural cataracts and to examine candidate genes in the linked region. METHODS: A large family with autosomal dominant congenital nuclear and sutural cataracts was identified and characterized. A genome-wide screen was conducted with a set of markers spaced at 10- to 15-cM intervals, and linkage was assessed using standard LOD score analysis. RESULT: Fifteen (15) affected individuals were identified. This form of congenital cataracts maps to a 12-cM region on chromosome 3q21.2-q22.3 between markers D3S3674 and D3S3612, with a maximum multipoint LOD score of 6.94 at D3S1273. The crystallin gene, CRYGS, was excluded as a candidate gene for this locus. CONCLUSIONS: There are now more than 12 different genetic loci that cause congenital cataracts. The most recent locus to be identified is on chromosome 3q21.2-q22.3, in a family with congenital nuclear and sutural cataracts.     

常染色体显性遗传性先天性白内障一家系致病基因的初步定位

目的 初步定位常染色体显性遗传性先天性白内障(ADCC)一家系的致病基因。方法 收集ADCC一家系资料,在已知先天性白内障致病基因和位点附近,选择合适的短串联重复序列多态性标记(STRP),对ADCC一家系进行连锁分析,使用Mlink软件采用对数优势记分法(LOD)计算LOD值。结果 在STRP中,D17S805、D17S1294及D17S1293与致病基因位点连锁的最大LOD值分别为2．03、2．49及2．22(重组率0=0)。结论 该ADCC家系的致病基因初步定位在第17对染色体上;CRYBA1基因为候选基因。（中华眼科杂志,2004,40：824-827)     

A novel locus for autosomal dominant nuclear cataract mapped to chromosome 2p12 in a Pakistani family

PURPOSE: To map the disease locus in a four-generation, consanguineous Pakistani family affected by autosomal dominant congenital nuclear cataract (adNCat). All affected individuals had early onset of bilateral nuclear cataract. METHODS: Genomic DNA from family members was typed for alleles at more than 300 known polymorphic genetic markers by polymerase chain reaction. The lod scores were calculated by using two-point linkage analysis of the genotyping data. RESULTS: The maximum lod score, 4.05, was obtained for the marker D2S2333. Proximal and distal crossovers were observed with markers D2S286 and D2S1790, respectively. These crossovers define the critical disease locus to an interval of approximately 9 centimorgans (cM). CONCLUSIONS: Linkage analysis identified a novel locus for adNCat on chromosome 2p12 in a Pakistani family. A genome database analysis of the target interval is being undertaken to identify candidate gene(s) for the disease.     

Genetic linkage analyses and Cx50 mutation detection in a large multiplex Chinese family with hereditary nuclear cataract

Purpose: The aim of the study was to characterize the underlying mutation in a large multiplex Chinese family with hereditary nuclear cataract.

Methods: A 6-generation Chinese family having hereditary nuclear cataract was recruited and clinically verified. Blood DNA samples were obtained from 53 available family members. Linkage analyses were performed on the known candidate regions for hereditary cataract with 36 polymorphic microsatellite markers. To identify mutations related to cataract, a direct sequencing approach was applied to a candidate gene residing in our linkage locus.

Results: A linkage locus was identified with a maximum 2-point LOD score of 4.31 (recombination fraction?=?0) at marker D1S498 and a maximum multipoint LOD score of 5.7 between markers D1S2344 and D1S498 on chromosome 1q21.1, where the candidate gene Cx50 is located. Direct sequencing of Cx50 showed a 139 G to A transition occurred in all affected family members. This transitional mutation resulted in a replacement of aspartic acid by asparagine at residue 47 (D47N) and led to a loss-of-function of the protein.

Conclusions: The D47N mutation of Cx50 causes the hereditary nuclear cataract in this family in an autosomal dominant mode of inheritance with incomplete penetrance.     

东北地区一遗传性白内障家系的临床遗传学及基因定位研究

目的:分析一先天性核型白内障家系的遗传方式及致病基因所在位置。方法:收集一个3代遗传性白内障家系成员的临床资料;提取家系成员外周血DNA,选取62个态性微卫星标记进行连锁分析。应用LINKAGE软件(version 5.2)中的MLINK程序计算两点连锁LOD值,并人工构建家系成员的单体型。结果:确定该家系为一常染色体显性遗传性白内障大家系,在微卫星标记D22S689可获得最大LOD值2.71(θ=0时),单体型提示该家系表型可能与染色体22q11.2-12.1区域连锁。该区域含有CRYBB1,CRYBB2,CRYBB3,CRYBA44个候选基因。结论:本研究先天性核型白内障家系符合常染色体显性遗传规律,其致病基因定位于22q11.2-12.1区域。     

Endothelial dystrophy,iris hypoplasia,congenital cataract,and stromal thinning (edict) syndrome maps to chromosome 15q22.1-q25.3

PURPOSE: To localize a gene causing a newly described autosomal dominant anterior segment dysgenesis characterized by corneal endothelial dystrophy, iris hypoplasia, congenital cataracts, and corneal stromal thinning (EDICT syndrome).DESIGN: Experimental study.METHODS: A set of microsatellite markers spanning the 22 human autosomes was used to perform linkage analysis on affected and unaffected individuals within a single family.RESULTS: Linkage analysis of the anterior segment dysgenesis endothelial dystrophy, iris hypoplasia, congenital cataract, and stromal thinning (EDICT) syndrome in this family revealed a logarithm of the odds (LOD) score of 2.71 on chromosome 15q22.1-25.3 between markers D15993 and D15S202. These results suggest a gene for EDICT syndrome lies in this chromosomal region.CONCLUSIONS: A LOD score of 2.71 suggests a novel locus associated with the newly described EDICT syndrome lies in a region of chromosome 15 between markers D15S993 and D15S202. Identification of the disease-causing gene in this region may yield insights into a broad range of disorders affecting the corneal stroma, endothelium, iris, and lens.     

*常染色体显性先天性缝合状白内障家系致病基因的定位

目的对我国一常染色体显性先天性缝合状白内障家系进行致病基因的定位。方法采集家系成员外周静脉血提取基因组DNA。选用美国Applied Biosystems公司提供的约400个遗传标记物进行基因扫描。数据经Linkage软件包进行连锁分析,初步确定致病基因所在染色体区域。在阳性区域内选取更高密度的荧光标记物进行精细扫描,用Cyrillic软件进行单体型分析。结果两点间连锁分析在D3S1279处获得最大对数优势记分（LOD）值Zmax=2．32（θmax=0．00）。通过精细扫描和单体型分析将致病基因定位于D3S1267和D3S1614之间约38．6厘摩（cM）区域内。结论先天性缝合状白内障家系的致病基因位于3号染色体3q21．1-q26．2约38．6cM区域内。（中华腥科杂志,2006,42：908—912）     

An early-onset autosomal dominant macular dystrophy (MCDR3) resembling North Carolina macular dystrophy maps to chromosome 5

PURPOSE: To characterize the phenotype of an autosomal dominant macular dystrophy and identify the chromosomal locus. METHODS: Thirteen members of a four-generation, nonconsanguineous British family were examined clinically and also underwent automated perimetry, fundus fluorescein angiography, and fundus autofluorescence imaging. After informed consent was obtained, blood samples were taken for DNA extraction, and genetic linkage analysis was performed. RESULTS: The retinal changes have an early age of onset and are confined to the macular region. The macular abnormalities vary from mild retinal pigment epithelium (RPE) pigmentary change to atrophy. Drusen-like deposits are present to various degrees and are characteristic of the phenotype. Subretinal neovascular membrane (SRNVM) is an established complication. Genetic linkage analysis established linkage to chromosome 5, region p13.1-p15.33 with a maximum LOD score of 3.61 at a recombination fraction of 0.00 for marker D5S630. The locus for this autosomal dominant macular dystrophy lies between flanking markers D5S1981 and D5S2031. CONCLUSIONS: A novel locus has been identified for early-onset autosomal dominant macular dystrophy on chromosome 5.     

The benign concentric annular macular dystrophy locus maps to 6p12.3-q16

PURPOSE: To describe the clinical findings and to identify the genetic locus in a Dutch family with autosomal dominant benign concentric annular macular dystrophy (BCAMD). METHODS: All family members underwent ophthalmic examination. Linkage analysis of candidate retinal dystrophy loci and a whole genome scan were performed. Five candidate genes from the linked locus were analyzed for mutations by direct sequencing. RESULTS: The BCAMD phenotype is initially characterized by parafoveal hypopigmentation and good visual acuity, but progresses to a retinitis pigmentosa-like phenotype. Linkage analysis established complete segregation of the BCAMD phenotype (maximum multipoint LOD score, 3.8) with DNA markers at chromosome 6, region p12.3-q16. Recombination events defined a critical interval spanning 30.7 cM at the long arm of chromosome 6 between markers D6S269 and D6S300. This interval encompasses several retinal dystrophy loci, including the ELOVL4 gene, mutated in autosomal dominant Stargardt disease, and the RIM1 gene, mutated in autosomal dominant cone-rod dystrophy, as well as the retinally expressed GABRR1 and -2 genes. Mutation screening of these four genes revealed no mutations. Sequence analysis of the interphotoreceptor matrix proteoglycan 1 gene IMPG1, also residing in the BCAMD locus, revealed a single base-pair change (T-->C) of nucleotide 1866 in exon 13, resulting in a Leu579Pro amino acid substitution. This mutation was absent in 190 control individuals. CONCLUSIONS: Significant linkage was found for the BCAMD defect with chromosomal 6, region p12.3-q16. A Leu579Pro mutation in the IMPG1 gene may play a causal role.     

常染色体显性先天性白内障一家系致病基因的连锁分析

背景先天性白内障约1／3的病例是由遗传所致,已发现遗传性白内障有着极为明显的遗传异质性,了解先天性白内障的致病基因对其基因治疗极为重要。目的分析一个具有常染色体显性遗传特点的先天性白内障家系的临床表型特征,进行已知致病基因的筛查定位。方法对遗传性先天性白内障一家系共16名成员眼部进行详细的临床检查,包括6例患者,确定为本家系白内障患者的临床表型。收集其中11名家系成员的血液样本提取DNA,包括3名正常家系成员及其配偶、5例患者。利用连锁分析进行排除定位,并采用Schuelke报道的新方法,只合成普通引物及一种荧光标记的通用引物M13,进行聚合酶链反应（PCR）,对连锁区域内的候选基因进行基因序列分析。结果本家系的白内障遗传方式符合常染色体显性遗传特征。基因连锁分析表明,在D22S315得到最高LOD值为1．20,在D16S3068得到LOD值为0．6。CRYBB2基因所有编码区及外显子与内含子交界处未发现基因序列突变。结论本家系初步排除了CRYBB2基因与此家系先天性白内障的相关性。对这个家系的基因定位需要更进一步的全基因组扫描,以发现致病基因在染色体上的可疑区间。连锁分析中进行微卫星位点的PCR扩增时,利用合成荧光标记的通用引物M13,可以显著降低成本,并取得同样的实验结果。     

A novel locus for Leber congenital amaurosis (LCA4) with anterior keratoconus mapping to chromosome 17p13

PURPOSE: A two-generation consanguineous Pakistani family with autosomal recessive Leber congenital amaurosis (LCA, MIM 204,000) and keratoconus was identified. All affected individuals have bilateral keratoconus and congenital pigmentary retinopathy. The goal of this study was to link the disease phenotype in this family. METHODS: Genomic DNA was amplified across the polymorphic microsatellite poly-CA regions identified by markers. Polymerase chain reaction (PCR) products were separated by nondenaturing polyacrylamide gel electrophoresis. Alleles were assigned to individuals, which allowed calculation of LOD scores using the Cyrillic and MLINK software program. The retinal guanylate cyclase (RETGC-1, GDB symbol GUC2D) and pigment epithelium-derived factor (PEDF) genes were analyzed by heteroduplex analysis and direct sequencing for mutations in diseased individuals. RESULTS: Based on a whole genome linkage analysis the first locus for this combined phenotype has been mapped to chromosome 17p13. Linkage analysis gave a two point LOD score of 3.21 for marker D17S829. Surrounding this marker is a region of homozygosity of 15.77 cM, between the markers D17S1866 and D17S960; however, the crossover for the marker D17S1529 refines the region to 10.77 cM within which the disease gene is predicted to lie. Mutation screening of the nearby RETGC-1 gene, which has been shown to be associated with LCA1, revealed no mutations in the affected individuals of this family. Similarly, another prime candidate in the region PEDF was also screened for mutations. The factor has been shown to be involved in the photoreceptor differentiation and neuronal survival. No mutations were found in this gene either. Furthermore, RETGC-1 was physically excluded from the critical disease region based on the existing physical map. CONCLUSIONS: It is therefore suggested that this combined phenotype maps to a new locus and is due to an as yet uncharacterized gene within the 17p13 chromosomal region.     

中国人常染色体遗传的病理性近视基因定位

目的在中国人群中进行病理性近视致病基因的定位。方法1个12人的病理性近视家系（患者7名）经过研究人员告知,同意参加本研究。从每个家系成员静脉血中提取DNA,选取覆盖全基因组的330对高度杂合的微卫星DNA引物,进行基因组扫描;以常染色体显性遗传为模式,基因频率0．0133和外显率100％的条件下,运用Linkage软件进行二点连锁分析,运用Genehunter软件进行多点连锁分析。标记位点之间的遗传距离根据Genethon连锁图谱来确定。基于最低重组率原则,用cyanic软件构建单倍型。结果二点连锁分析发现15号染色体长臂上存在与病理性近视密切连锁的位点。在重组率为0的情况下,最大对数优势记分（LOD）值1．76出现在D15S1010,D15S1007和D15S1042位点;多点连锁分析也支持这个区域内存在连锁,最大NIL值为5．16。单倍型分析把这个近视眼位点局限在15q12-13上D15S1019和D15S146之间大约12cM的区间内。在已知的近视眼相关位点,包括18p11．31,12q21-23,7q36,17q21-22,4q22-q27,2q37．1,15q15-21,12q13．11-13．2,6p21．3,1q21-31,1p21和21q22．3,均没有发现明确的连锁证据。结论在15q12-13可能存在一个新的近视眼基因位点。在这个区域内至少有94个已知的基因,因此有必要对此区域进行测序寻找致病基因,这个新的基因位点的发现也证实了病理性近视存在很强的遗传异质性。     

First genomic localization of oculo-oto-dental syndrome with linkage to chromosome 20q13.1

PURPOSE: To characterize the phenotype of autosomal dominant oculo-oto-dental (OOD) syndrome, map the disease locus in a five-generation British family, and evaluate a candidate gene. METHODS: Full clinical assessments in all affected patients included slit lamp and retina examination, refraction, A-scan ultrasound, audiograms, and dental assessments. Genomic DNA from all family members was genotyped, by polymerase chain reaction, for polymorphic genetic markers covering the entire genome. Two-point LOD scores were generated using a linkage analysis suite of computer programs. The gene for eyes absent 2 (EYA2) was screened for mutations by direct automated sequencing and Southern blot analysis. RESULTS: All the affected individuals examined had iris and retina coloboma associated with high-frequency, progressive, sensorineural deafness and globodontia. This is the only genetic disease known to result in pathologically enlarged teeth. The locus for OOD (OOD1) was mapped to 20q13.1. A maximum two-point LOD score of 3.31 was obtained with marker locus D20S836 at a recombination fraction of theta; = 0.00. Two critical recombinations in the pedigree positioned this locus to a region flanked by marker loci D20S108 and D20S159, giving a critical disease interval of 12 centimorgans (cM). Mutation screening of one candidate gene, EYA2, revealed no disease-associated mutations or polymorphic variants. CONCLUSIONS: This is the first genetic localization for the OOD phenotype (ODD1). The disease-causing gene is localized within a 12-cM critical region of chromosome 20q13.1. The identification of the disease gene is not only relevant to the study of vision and hearing defects, but also highlights an exceptional gene involved in the development of human dentition.     

Familial high myopia linkage to chromosome 18p

A locus for autosomal dominant high myopia was reported on chromosome 18p. We sought to confirm this finding and narrow the reported interval by analyzing high myopia among families of Hong Kong Chinese, in whom myopia is common. In 15 families with a possibly autosomal dominant inheritance of high myopia (>or=-6 dpt) in at least 2 generations, 10 chromosome 18p markers were analyzed for linkage with high myopia. Two-point linkage analysis showed trends toward linkage of markers D18S476 and D18S62 with high myopia, with maximum logarithm of odds (LOD) scores of at least 1.1 and 1.7, respectively. Multipoint analysis of those 2 markers gave a maximum LOD score of at least 2.1. To attempt to account for likely genetic heterogeneity, 5 families showing evidence of linkage of the 2 markers with high myopia were selected for further multipoint linkage analysis, resulting in a maximum LOD score of 2.4 at D18S476. While multiple genetic and environmental factors likely contribute to myopia, these data are consistent with the possibility of a locus on chromosome 18p.     

A locus for autosomal dominant keratoconus: linkage to 16q22.3-q23.1 in Finnish families

PURPOSE: The estimated world-wide prevalence of keratoconus is 50 to 230 per 100,000 in the general population. Sporadic keratoconus is the leading cause of corneal transplantation surgery in Western countries. Positive family history has been reported in 6% to 8% of patients. The purpose of this study was to map the disease locus in 20 Finnish families with autosomal dominant keratoconus, each family having two or more affected members and with no other associated genetic disease. METHODS: DNA was extracted from blood samples, collected from 42 affected and 34 unaffected family members. Genomic DNA from patients and their parents, was typed for alleles of 292 polymorphic markers. A genome-wide screening was performed to localize the disease gene. Fluorescent markers were amplified by polymerase chain reaction and separated on an automated sequencer. Allele sizes were assigned to each family member, after which LOD scores were calculated. RESULTS: The disease locus was mapped to chromosome 16q, between the markers D16S2624 and D16S3090, with a maximum parametric multipoint LOD score of 4.10 and corresponding nonparametric score of 3.27 (NPL, P = 0.00006). Evidence from 20 families provided support for the linkage, consistent with a single locus for familial autosomal dominant keratoconus without heterogeneity. CONCLUSIONS: This study is the first genome-wide linkage study to map the keratoconus gene. The results suggest that the causative gene in keratoconus is located within the 16q22.3-q23.1 chromosomal region.     

一个先天性眼外肌纤维化中国家系的基因定位

目的对一个常染色体显性遗传的先天性眼外肌纤维化(congenial fibrosis of the extraocular muscles,CFEOM)的中国家系进行基因定位。方法收集一个CFEOM中国家系,对该家系成员进行详细眼科检查,确诊为CFEOM。采集外周血5ml并抽提DNA,采用多个已知遗传标记与该家系致病基因位点进行连锁分析。结果在标记位点D12S345、D12S331及D12S1048处,lod值均大于1,其中在标记位点D12S331处获得最大lod值,lod=2.24(θ=0)。结论研究提示遗传位点与标记位点D12S345、D12S331和D12S1048存在连锁。其基因型与位于12号染色体上12p11.2-q12的CFEOM1的基因型一致。     

Familial keratoconus with cataract: linkage to the long arm of chromosome 15 and exclusion of candidate genes

PURPOSE: Keratoconus and cataract are common causes of visual morbidity. Both conditions show genetic predisposition. The purpose of this study was to map the disease locus in a large three-generation family affected by combined early-onset autosomal dominant anterior polar cataract and clinically severe keratoconus. Uniquely, in this family both disorders were present and fully penetrant in those affected. METHODS: Thirty members of the family were examined clinically on two occasions, at an interval of 5 years, to establish their phenotypes and determine the progression of the disease. Genomic DNA was extracted from blood samples of 16 affected and 14 unaffected individuals, and typed with more than 350 highly polymorphic microsatellite loci in a genome-wide linkage screen. Markers were amplified by PCR with fluorescently labeled primers and sized with an automated DNA analyser before calculation of lod scores. After linkage was established, several positional candidate genes were assessed by PCR-based DNA sequencing. RESULTS: The locus for keratoconus with cataract was mapped to a 6.5-Mb region of the long arm of chromosome 15, at 22.33-24.2 between CYP11A and D15S211. The positional and functional candidate genes CTSH, CRABP1, IREB2, and RASGRF1 were excluded as the cause of keratoconus with cataract in this family. CONCLUSIONS: This is the first report of a family with autosomal dominant inheritance of keratoconus in association with cataract. The causative gene maps to the long arm of chromosome 15 but has not yet been identified.     

一特殊表型的常染色体显性遗传先天性白内障家系致病基因的筛选与鉴定

背景遗传因素是先天性白内障的主要致病因素之一,致病基因的筛查是研究先天性白内障发病分子机制的重要步骤。目的明确一结晶样晶状体混浊的先天性常染色体显性遗传白内障（ADCC）家系的致病基因。方法收集山西省榆社县一个四代先天性结晶样混浊白内障家系22名成员,其中患者10例。在获得知情同意后,该家系成员进行家系调查以确定遗传方式。经裂隙灯显微镜检查和常规眼科临床检查确定表型。采集其中17例家系成员的外周静脉血5ml并提取DNA,ADCC的17个已知致病基因周围选取22个荧光标记的微卫星,通过对微卫星标志物的扩增和基因型分析对该家系进行基因两点连锁分析,并计算对数优势评分（LOD）值。对筛选的候选基因进行直接测序分析。结果该家系患者晶状体混浊表型非常类似,家系分析表明为四代垂直遗传,符合单基因ADCC的特点。基因连锁分析提示,该家系与微卫星D2S325位点和D2S2358位点连锁,最大LOD值分别为1．20（0=0）和0．22（0=0）,位于此区域内的CRYGD基因测序后发现一个已经报道的错义突变c．C70A（p．P23T）。结论CRYGD基因P23T突变是该家系结晶样晶状体混浊的致病原因。     

先天性前极白内障家系致病基因的定位与候选基因突变检测

目的 对中国一常染色体显性遗传先天性前极白内障家系进行致病基因的定位与候选基因突变检测.方法 采集家系成员外周静脉血,提取基因组DNA.选用ABI公司提供的约400个遗传标记物进行基因扫描.基因扫描分初步扫描和精细扫描两步进行.首先对已报道的先天性白内障候选区域进行初步扫描,之后在阳性区域内进行精细扫描.数据经连锁分析,初步确定致病基因所在染色体区域.在阳性区域内选取更高密度的荧光标记物进行精细扫描,并进行单体型分析.候选基因直接测序检测基因突变.结果 两点间连锁分析在微卫星标记D21S1252处获得最大对数优势计分(LOD)值Zmax=3.23(θmax=0.00).精细定位和单体型分析将致病基因定位于微卫星标记D21S263和D21S266之间,遗传距离约18.47厘摩(cM),染色体位置为21q22.11-q22.3.候选基因直接测序发现CRYAA基因第3外显子第347碱基一个G→A的点突变.结论 本研究将一中国先天性前极白内障家系的致病基因定位于21号染色体21q22.11-q22.3区域内,并在CRYAA基因发现一个点突变与此家系共分离.

Abstract：

Objective To map the gene mutation responsible for autosomal dominant inherited congenital anterior polar cataract in a Chinese family. Methods Peripheral blood samples were collected from the members in this congenital cataract family. DNA was extracted from the blood samples. A genescan was performed using approximately 400 microsatellite markers (ABI). Linkage analysis was processed to define the region of mutated gene. High density primers labeled with fluorescent stain for the positive region were adopted for fine targeting and haplotype analysis was performed. Mutation detection was carried out by sequencing candidate genes. Results The maximum two-point LOD score was obtained at D21S1252,Zmax = 3. 23 ( θmax = 0. 00). After fine targeting and haplotype analysis,the mutated gene was located within a 18. 47 cM region between D21S263 and D21S266 on chromosome 21q22.11 -q22.3. Direct sequencing of the candidate gene revealed a G→ A transition in exon 3 of CRYAA. Conclusion The present study has identified a missense mutation in CRYAA associated with congenital anterior polar cataract in a Chinese family.