Aging: the fitness-stress continuum and genetic variability

Assuming the stress theory of aging, longevity depends upon primary selection for stress resistance and metabolic efficiency. Predominantly based upon experimental studies in the insect Drosophila melanogaster, high genetic variability for fitness, especially mortality, occurs under extreme stress. Isofemale strains derived from the progeny of recently collected single inseminated Drosophila females from the wild should provide useful biological material for extrapolating to quantitative genetic studies in man. Furthermore, environments from the benign (hormetic) to the extreme can be incorporated. Survival to old age may depend upon genes for metabolic efficiency that respond to the environmental challenges of living as limits to adaptation are approached. Under this scenario the survival of longevity mutants in man to ages analogous to the extreme life spans found in some experimental organisms under benign or protected laboratory conditions is unlikely. More future emphasis is needed on genetic variation of longevity in natural populations of experimental organisms under an array of realistically stressful environments to act as an evolutionary model for longevity in our own species.     

Aging: The Fitness-Stress Continuum and Genetic Variability

Assuming the stress theory of aging, longevity depends upon primary selection for stress resistance and metabolic efficiency. Predominantly based upon experimental studies in the insect Drosophila melanogaster , high genetic variability for fitness, especially mortality, occurs under extreme stress. Isofemale strains derived from the progeny of recently collected single inseminated Drosophila females from the wild should provide useful biological material for extrapolating to quantitative genetic studies in man. Furthermore, environments from the benign (hormetic) to the extreme can be incorporated. Survival to old age may depend upon genes for metabolic efficiency that respond to the environmental challenges of living as limits to adaptation are approached. Under this scenario the survival of longevity mutants in man to ages analogous to the extreme life spans found in some experimental organisms under benign or protected laboratory conditions is unlikely. More future emphasis is needed on genetic variation of longevity in natural populations of experimental organisms under an array of realistically stressful environments to act as an evolutionary model for longevity in our own species.     

Fabrication of Diamond Based Sensors for Use in Extreme Environments

Electrical and magnetic sensors can be lithographically fabricated on top of diamond substrates and encapsulated in a protective layer of chemical vapor deposited single crystalline diamond. This process when carried out on single crystal diamond anvils employed in high pressure research is termed as designer diamond anvil fabrication. These designer diamond anvils allow researchers to study electrical and magnetic properties of materials under extreme conditions without any possibility of damaging the sensing elements. We describe a novel method for the fabrication of designer diamond anvils with the use of maskless lithography and chemical vapor deposition in this paper. This method can be utilized to produce diamond based sensors which can function in extreme environments of high pressures, high and low temperatures, corrosive and high radiation conditions. We demonstrate applicability of these diamonds under extreme environments by performing electrical resistance measurements during superconducting transition in rare earth doped iron-based compounds under high pressures to 12 GPa and low temperatures to 10 K.     

Viruses from extreme thermal environments

Viruses of extreme thermophiles are of great interest because they serve as model systems for understanding the biochemistry and molecular biology required for life at high temperatures. In this work, we report the discovery, isolation, and preliminary characterization of viruses and virus-like particles from extreme thermal acidic environments (70-92 degrees C, pH 1.0-4.5) found in Yellowstone National Park. Six unique particle morphologies were found in Sulfolobus enrichment cultures. Three of the particle morphologies are similar to viruses previously isolated from Sulfolobus species from Iceland and/or Japan. Sequence analysis of their viral genomes suggests that they are related to the Icelandic and Japanese isolates. In addition, three virus particle morphologies that had not been previously observed from thermal environments were found. These viruses appear to be completely novel in nature.     

Assembly of nonnative floras along elevational gradients explained by directional ecological filtering

Nonnative species richness typically declines along environmental gradients such as elevation. It is usually assumed that this is because few invaders possess the necessary adaptations to succeed under extreme environmental conditions. Here, we show that nonnative plants reaching high elevations around the world are not highly specialized stress tolerators but species with broad climatic tolerances capable of growing across a wide elevational range. These results contrast with patterns for native species, and they can be explained by the unidirectional expansion of nonnative species from anthropogenic sources at low elevations and the progressive dropping out of species with narrow elevational amplitudes--a process that we call directional ecological filtering. Independent data confirm that climatic generalists have succeeded in colonizing the more extreme environments at higher elevations. These results suggest that invasion resistance is not conferred by extreme conditions at a particular site but determined by pathways of introduction of nonnative species. In the future, increased direct introduction of nonnative species with specialized ecophysiological adaptations to mountain environments could increase the risk of invasion. As well as providing a general explanation for gradients of nonnative species richness and the importance of traits such as phenotypic plasticity for many invasive species, the concept of directional ecological filtering is useful for understanding the initial assembly of some native floras at high elevations and latitudes.     

Energetic efficiency under stress underlies positive genetic correlations between longevity and other fitness traits in natural populations

Evolutionary relationships among fitness traits are considered in terms of the near-to-universal scenario of stressful environments leading to a resource-deficient and hence energy-deficient world. Fitness approximates to energetic (and metabolic) efficiency under this environmental model. When fitness is high, stress resistance (reducible to oxidative-stress resistance) and metabolic stability are maximal, and energy expenditure is minimal. Rapid development should then be favored followed by a long lifespan and high adult survival. Positive associations among diverse fitness or life-history traits are expected, controlled by stress-resistant ‘good genotypes’. Heterozygotes tend to show higher energetic efficiency and hence higher fitness than do corresponding homozygotes under extreme environments, and to give parallel associations among life-history traits. Energy budgets under abiotic environments are pivotal for integrative evolutionary studies of life histories in natural populations.     

Self-Lubricating Materials for Extreme Condition Applications

Lubrication for extreme conditions, such as high temperature, cryogenic temperature, vacuum pressure, high load, high speed, and corrosive environments, is a continuing challenge among tribologists and space engineers due to the inadequate friction and wear properties of liquid lubricants. As a result, tremendous research effort has been put forward to study lubrication mechanisms for various machine elements under challenging conditions over the past two decades. Self-lubricating materials have been most widely used for adequate lubrication in extreme conditions in recent years. This review paper presents state-of-the-art of materials for lubrication in extreme condition applications in aerospace, automotive, and power generation areas. More specifically, solid lubricants dispersed in various matrices for lubrication application were analyzed in-depth under challenging conditions. This study also reports the self-lubricating materials and their lubrication mechanisms. Finally, various applications and challenges of self-lubricating materials were explored.     

Understanding the association between diet and nutrition in upper gastrointestinal cancer

Human vulnerability to cancers of the upper gastrointestinal tract is strongly influenced by environmental factors. The esophagus, in particular, is highly vulnerable to the combined effects of exposure to environmental carcinogens and malnutrition, particularly in certain extreme environments of the developing world. Even in high-income countries, dietary carcinogens and nutrition play a major role in the etiology of oropharyngeal, esophageal and, to a lesser extent, gastric cancers, but the mechanisms are poorly understood. A thorough understanding of the biological mechanisms underlying the vulnerability of these organs to neoplasia would shed further light on the etiology of upper gastrointestinal cancers in all environments. In the meantime, the epidemiological evidence suggests that the risks can be minimized by dietary patterns that adhere closely to current public health recommendations, coupled with maintenance of body mass index within the healthy range.     

Enigmatic,ultrasmall, uncultivated Archaea

Metagenomics has provided access to genomes of as yet uncultivated microorganisms in natural environments, yet there are gaps in our knowledge—particularly for Archaea—that occur at relatively low abundance and in extreme environments. Ultrasmall cells (<500 nm in diameter) from lineages without cultivated representatives that branch near the crenarchaeal/euryarchaeal divide have been detected in a variety of acidic ecosystems. We reconstructed composite, near-complete ~1-Mb genomes for three lineages, referred to as ARMAN (archaeal Richmond Mine acidophilic nanoorganisms), from environmental samples and a biofilm filtrate. Genes of two lineages are among the smallest yet described, enabling a 10% higher coding density than found genomes of the same size, and there are noncontiguous genes. No biological function could be inferred for up to 45% of genes and no more than 63% of the predicted proteins could be assigned to a revised set of archaeal clusters of orthologous groups. Some core metabolic genes are more common in Crenarchaeota than Euryarchaeota, up to 21% of genes have the highest sequence identity to bacterial genes, and 12 belong to clusters of orthologous groups that were previously exclusive to bacteria. A small subset of 3D cryo-electron tomographic reconstructions clearly show penetration of the ARMAN cell wall and cytoplasmic membranes by protuberances extended from cells of the archaeal order Thermoplasmatales. Interspecies interactions, the presence of a unique internal tubular organelle [Comolli, et al. (2009) ISME J 3:159–167], and many genes previously only affiliated with Crenarchaea or Bacteria indicate extensive unique physiology in organisms that branched close to the time that Cren- and Euryarchaeotal lineages diverged.     

The Effect of Harsh Environmental Conditions on Concrete Plastic Shrinkage Cracks: Case Study Saudi Arabia

Due to climate change and population expansion, concrete structures are progressively being subjected to more extreme environments. As the environment affects plastic shrinkage directly, there is a need to understand the effect of environmental changes on plastic shrinkage cracking. This paper examines the plastic shrinkage crack development parametrically at low, mid, and high drying environmental conditions, corresponding to different environments in three Saudi cities. The effects of water-cement ratios and quantities of recycled tire steel fibers (RTSF) in concrete are also investigated. The different environmental conditions for the plastic shrinkage tests were simulated in a specially designed chamber as per ASTM C1579, 2006. A digital image processing (DIP) technique was used to monitor crack initiation and development. Through the use of the crack reduction ratio (CRR), it was found that 30 kg/m³ of RTSF can control plastic shrinkage cracks at low and mid conditions. For the more extreme (high) conditions, the use of 40 kg/m³ of RTSF fiber was sufficient to completely eliminate surface plastic shrinkage cracks. This work can help develop more sustainable concrete structures in a wider set of environmental conditions and help mitigate the impact of climate change on concrete infrastructure.     

Hot temperatures can force delayed mosquito outbreaks via sequential changes in Aedes aegypti demographic parameters in autocorrelated environments

Aedes aegypti L. (Diptera: Culicidae) is a common pantropical urban mosquito, vector of dengue, Yellow Fever and chikungunya viruses. Studies have shown Ae. aegypti abundance to be associated with environmental fluctuations, revealing patterns such as the occurrence of delayed mosquito outbreaks, i.e., sudden extraordinary increases in mosquito abundance following transient extreme high temperatures. Here, we use a two-stage (larvae and adults) matrix model to propose a mechanism for environmental signal canalization into demographic parameters of Ae. aegypti that could explain delayed high temperature induced mosquito outbreaks. We performed model simulations using parameters estimated from a weekly time series from Thailand, assuming either independent or autocorrelated environments. For autocorrelated environments, we found that long delays in the association between the onset of “hot” environments and mosquito outbreaks (10 weeks, as observed in Thailand) can be generated when “hot” environments sequentially trigger a larval survival decrease and over-compensatory fecundity increase, which lasts for the whole “hot” period, in conjunction with a larval survival increase followed by a fecundity decrease when the environment returns to “normal”. This result was not observed for independent environments. Finally, we discuss our results implications for prospective entomological research and vector management under changing environments.     

Elucidating nature's solutions to heart, lung, and blood diseases and sleep disorders

Evolution has provided a number of animal species with extraordinary phenotypes. Several of these phenotypes allow species to survive and thrive in environmental conditions that mimic disease states in humans. The study of evolved mechanisms responsible for these phenotypes may provide insights into the basis of human disease and guide the design of new therapeutic approaches. Examples include species that tolerate acute or chronic hypoxemia like deep-diving mammals and high-altitude inhabitants, as well as those that hibernate and interrupt their development when exposed to adverse environments. The evolved traits exhibited by these animal species involve modifications of common biological pathways that affect metabolic regulation, organ function, antioxidant defenses, and oxygen transport. In 2006, the National Heart, Lung, and Blood Institute released a funding opportunity announcement to support studies that were designed to elucidate the natural molecular and cellular mechanisms of adaptation in species that tolerate extreme environmental conditions. The rationale for this funding opportunity is detailed in this article, and the specific evolved mechanisms examined in the supported research are described. Also highlighted are past medical advances achieved through the study of animal species that have evolved extraordinary phenotypes as well as the expectations for new understanding of nature's solutions to heart, lung, blood, and sleep disorders through future research in this area.     

Pulmonary function testing and extreme environments

Millions of people worldwide engage in leisure or occupational activities in extreme environments. These environments entail health risks even for normal subjects. The presence of lung disease, or other conditions, further predisposes to illness or injury. Patients who have lung conditions should, but often do not, consult with their pulmonary clinicians before traveling. Normal subjects, including elderly or deconditioned adults, may be referred to pulmonologists for evaluation of risk prior to exposure. Other patients may present for consultations after complications occur. Pulmonary function testing before or after exposure can assist physicians counseling patients about the likelihood of complications.     

The convergence of carbohydrate active gene repertoires in human gut microbes

The extreme variation in gene content among phylogenetically related microorganisms suggests that gene acquisition, expansion, and loss are important evolutionary forces for adaptation to new environments. Accordingly, phylogenetically disparate organisms that share a habitat may converge in gene content as they adapt to confront shared challenges. This response should be especially pronounced for functional genes that are important for survival in a particular habitat. We illustrate this principle by showing that the repertoires of two different types of carbohydrate-active enzymes, glycoside hydrolases and glycosyltransferases, have converged in bacteria and archaea that live in the human gut and that this convergence is largely due to horizontal gene transfer rather than gene family expansion. We also identify gut microbes that may have more similar dietary niches in the human gut than would be expected based on phylogeny. The techniques used to obtain these results should be broadly applicable to understanding the functional genes and evolutionary processes important for adaptation in many environments and useful for interpreting the large number of reference microbial genome sequences being generated for the International Human Microbiome Project.     

Benthic eukaryotic diversity in the Guaymas Basin hydrothermal vent environment

Molecular microbial ecology studies have revealed remarkable prokaryotic diversity in extreme hydrothermal marine environments. There are no comparable reports of culture-independent surveys of eukaryotic life in warm, anoxic marine sediments. By using sequence comparisons of PCR-amplified small subunit ribosomal RNAs, we characterized eukaryotic diversity in hydrothermal vent environments of Guaymas Basin in the Gulf of California. Many sequences from these anoxic sediments and the overlaying seawater represent previously uncharacterized protists, including early branching eukaryotic lineages or extended diversity within described taxa. At least two mechanisms, with overlapping consequences, account for the eukaryotic community structure of this environment. The adaptation to anoxic environments is evidenced by specific affinity of environmental sequences to aerotolerant anaerobic species in molecular trees. This pattern is superimposed against a background of widely distributed aerophilic and aerotolerant protists, some of which may migrate into and survive in the sediment whereas others (e.g., phototrophs) are simply deposited by sedimentary processes. In contrast, bacterial populations in these sediments are primarily characteristic of anoxic, reduced, hydrocarbon-rich sedimentary habitats.     

Genes and environment: how will our concepts on the pathophysiology of IBD develop in the future?

Inflammatory bowel disease (IBD) has long been known to arise from the interplay between host and environmental factors. From this, a picture is currently emerging in which IBD is likely the result of a continuum of diseases that range from mono- and oligogenically inherited familial forms at one extreme to sporadic forms at the other extreme, which are polygenic in origin and strongly influenced by environmental factors and especially those of infectious origin. The recent expansion of knowledge on the genetic underpinning of IBD has revealed several converging and inter-related functional host pathways that are central to the pathogenesis of these disorders. These include pathways such as autophagy, intracellular bacterial sensing and the unfolded protein response, which play specific roles at the interface between the host and the highly complex microbial communities within the intestines. As such they focus on the functional relationship between the intestinal epithelium and the unique microbial and immune environments along its luminal and abluminal surfaces. Thus, the genetic and environmental factors which are relevant to IBD seem to have the common property of influencing disease by virtue of their specific impact upon the functional relationship between these microbial communities and the intestinal immune system.     

Essential genes from Arctic bacteria used to construct stable,temperature-sensitive bacterial vaccines

All bacteria share a set of evolutionarily conserved essential genes that encode products that are required for viability. The great diversity of environments that bacteria inhabit, including environments at extreme temperatures, place adaptive pressure on essential genes. We sought to use this evolutionary diversity of essential genes to engineer bacterial pathogens to be stably temperature-sensitive, and thus useful as live vaccines. We isolated essential genes from bacteria found in the Arctic and substituted them for their counterparts into pathogens of mammals. We found that substitution of nine different essential genes from psychrophilic (cold-loving) bacteria into mammalian pathogenic bacteria resulted in strains that died below their normal-temperature growth limits. Substitution of three different psychrophilic gene orthologs of ligA, which encode NAD-dependent DNA ligase, resulted in bacterial strains that died at 33, 35, and 37 °C. One ligA gene was shown to render Francisella tularensis, Salmonella enterica, and Mycobacterium smegmatis temperature-sensitive, demonstrating that this gene functions in both Gram-negative and Gram-positive lineage bacteria. Three temperature-sensitive F. tularensis strains were shown to induce protective immunity after vaccination at a cool body site. About half of the genes that could be tested were unable to mutate to temperature-resistant forms at detectable levels. These results show that psychrophilic essential genes can be used to create a unique class of bacterial temperature-sensitive vaccines for important human pathogens, such as S. enterica and Mycobacterium tuberculosis.     

The development of minimally invasive continuous Metabolic Monitoring Technologies in the U.S. Army TMM Research Program

The Technologies for Metabolic Monitoring and Julia Weaver Fund Research Program (TMM) promotes the development of minimally invasive, innovative technologies for the monitoring and assessment of metabolic changes that are important to the management of diabetes. This program also promotes the advancement of biological monitoring technologies for healthy individuals operating in extreme environments, such as soldiers and astronauts. These technologies have focused on measurements of analytes in interstitial fluids and functional outcomes related to glucose regulation. TMM investigators have advanced new sensing methods and are working to overcome technological barriers to long-term implants. This paper reviews the current goals, research areas, and future direction of the program.     

A systematic review of the Australian food retail environment: Characteristics,variation by geographic area,socioeconomic position and associations with diet and obesity

There is strong support across multiple sectors for the implementation of policies to create healthier food environments as part of comprehensive strategies to address obesity and improve population diets. The existing evidence base describing food retail environments and their relationship with health outcomes is limited in several respects. This systematic review examines the current evidence regarding food retail environments in Australia, including associations with diet and people with obesity, and socioeconomic and geographic disparities. Three databases were searched and independently screened. Studies were included if they were undertaken in Australia and objectively measured the food retail environment. Sixty papers were included. The broad range of methodological approaches used across studies limited the ability to synthesize the evidence and draw conclusions. Results indicated that there is some evidence that disparities exist in food retail environments across measures of socioeconomic position and geographic area in parts of Australia. Overall, there were inconsistent findings regarding the association between the healthiness of food retail environments and diet or people with obesity. Findings support previous calls for standardized tools and measures for monitoring the healthiness of food retail environments. This is imperative to inform evidence‐based policy and evaluation in this critical component of recommended obesity prevention strategies.