Robust fat suppression at 3T in high‐resolution diffusion‐weighted single‐shot echo‐planar imaging of human brain

Single‐shot echo‐planar imaging is the most common acquisition technique for whole‐brain diffusion tensor imaging (DTI) studies in vivo. Higher field MRI systems are readily available and advantageous for acquiring DTI due to increased signal. One of the practical issues for DTI with single‐shot echo‐planar imaging at high‐field is incomplete fat suppression resulting in a chemically shifted fat artifact within the brain image. Unsuppressed fat is especially detrimental in DTI because the diffusion coefficient of fat is two orders of magnitude lower than that of parenchyma, producing brighter appearing fat artifacts with greater diffusion weighting. In this work, several fat suppression techniques were tested alone and in combination with the goal of finding a method that provides robust fat suppression and can be used in high‐resolution single‐shot echo‐planar imaging DTI studies. Combination of chemical shift saturation with slice‐select gradient reversal within a dual‐spin‐echo diffusion preparation period was found to provide robust fat suppression at 3 T. Magn Reson Med, 2011. © 2011 Wiley Periodicals, Inc.     

Removal of olefinic fat chemical shift artifact in diffusion MRI

Diffusion‐weighted (DW) MRI has emerged as a key tool for assessing the microstructure of tissues in healthy and diseased states. Because of its rapid acquisition speed and insensitivity to motion, single‐shot echo‐planar imaging is the most common DW imaging technique. However, the presence of fat signal can severely affect DW‐echo planar imaging acquisitions because of the chemical shift artifact. Fat suppression is usually achieved through some form of chemical shift‐based fat saturation. Such methods effectively suppress the signal originating from aliphatic fat protons, but fail to suppress the signal from olefinic protons. Olefinic fat signal may result in significant distortions in the DW images, which bias the subsequently estimated diffusion parameters. This article introduces a method for removing olefinic fat signal from DW images, based on an echo time‐shifted acquisition. The method is developed and analyzed specifically in the context of single‐shot DW‐echo‐planar imaging, where image phase is generally unreliable. The proposed method is tested with phantom and in vivo datasets, and compared with a standard acquisition to demonstrate its performance. Magn Reson Med, 2011. © 2010 Wiley‐Liss, Inc.     

Noninvasive temperature mapping with MRI using chemical shift water‐fat separation

Tissues containing both water and lipids, e.g., breast, confound standard MR proton reference frequency‐shift methods for mapping temperatures due to the lack of temperature‐induced frequency shift in lipid protons. Generalized Dixon chemical shift–based water‐fat separation methods, such as GE's iterative decomposition of water and fat with echo asymmetry and least‐squares estimation method, can result in complex water and fat images. Once separated, the phase change over time of the water signal can be used to map temperature. Phase change of the lipid signal can be used to correct for non‐temperature‐dependent phase changes, such as amplitude of static field drift. In this work, an image acquisition and postprocessing method, called water and fat thermal MRI, is demonstrated in phantoms containing 30:70, 50:50, and 70:30 water‐to‐fat by volume. Noninvasive heating was applied in an Off1‐On‐Off2 pattern over 50 min, using a miniannular phased radiofrequency array. Temperature changes were referenced to the first image acquisition. Four fiber optic temperature probes were placed inside the phantoms for temperature comparison. Region of interest (ROI) temperature values colocated with the probes showed excellent agreement (global mean ± standard deviation: ?0.09 ± 0.34°C) despite significant amplitude of static field drift during the experiments. Magn Reson Med 63:1238–1246, 2010. © 2010 Wiley‐Liss, Inc.     

Fast‐spin‐echo imaging of inner fields‐of‐view with 2D‐selective RF excitations

Purpose:

To demonstrate the feasibility of two‐dimensional selective radio frequency (2DRF) excitations for fast‐spin‐echo imaging of inner fields‐of‐view (FOVs) in order to shorten acquisitions times, decrease RF energy deposition, and reduce image blurring.

Materials and Methods:

Fast‐spin‐echo images (in‐plane resolution 1.0 × 1.0 mm² or 0.5 × 1.0 mm²) of inner FOVs (40 mm, 16 mm oversampling) were obtained in phantoms and healthy volunteers on a 3 T whole‐body MR system using blipped‐planar 2DRF excitations.

Results:

Positioning the unwanted side excitations in the blind spot between the image section and the slice stack to measure yields minimum 2DRF pulse durations (about 6 msec) that are compatible with typical echo spacings of fast‐spin‐echo acquisitions. For the inner FOVs, the number of echoes and refocusing RF pulses is considerably reduced which compared to a full FOV (182 mm) reduces the RF energy deposition by about a factor of three and shortens the acquisition time, e.g., from 39 seconds to 12 seconds for a turbo factor of 15 or from 900 msec to 280 msec for a single‐shot acquisition, respectively. Furthermore, image blurring occurring for high turbo factors as in single‐shot acquisitions is considerably reduced yielding effectively higher in‐plane resolutions.

Conclusion:

Inner‐FOV acquisitions using 2DRF excitations may help to shorten acquisitions times, ameliorate image blurring, and reduce specific absorption rate (SAR) limitations of fast‐spin‐echo (FSE) imaging, in particular at higher static magnetic fields. J. Magn. Reson. Imaging 2010;31:1530–1537. © 2010 Wiley‐Liss, Inc.     

High‐resolution spiral imaging on a whole‐body 7T scanner with minimized image blurring

High‐resolution (～0.22 mm) images are preferably acquired on whole‐body 7T scanners to visualize minianatomic structures in human brain. They usually need long acquisition time (～12 min) in three‐dimensional scans, even with both parallel imaging and partial Fourier samplings. The combined use of both fast imaging techniques, however, leads to occasionally visible undersampling artifacts. Spiral imaging has an advantage in acquisition efficiency over rectangular sampling, but its implementations are limited due to image blurring caused by a strong off‐resonance effect at 7T. This study proposes a solution for minimizing image blurring while keeping spiral efficient. Image blurring at 7T was, first, quantitatively investigated using computer simulations and point‐spread functions. A combined use of multishot spirals and ultrashort echo time acquisitions was then employed to minimize off‐resonance‐induced image blurring. Experiments on phantoms and healthy subjects were performed on a whole‐body 7T scanner to show the performance of the proposed method. The three‐dimensional brain images of human subjects were obtained at echo time = 1.18 ms, resolution = 0.22mm (field of view = 220mm, matrix size = 1024), and in‐plane spiral shots = 128, using a home‐developed ultrashort echo time sequence (acquisition‐weighted stack of spirals). The total acquisition time for 60 partitions at pulse repetition time = 100 ms was 12.8 min without use of parallel imaging and partial Fourier sampling. The blurring in these spiral images was minimized to a level comparable to that in gradient‐echo images with rectangular acquisitions, while the spiral acquisition efficiency was maintained at eight. These images showed that spiral imaging at 7T was feasible. Magn Reson Med, 2010. © 2010 Wiley‐Liss, Inc.     

Continuously moving table 3D MRI with lateral frequency-encoding direction.

A method is presented for 3D MRI in an extended field of view (FOV) based on continuous motion of the patient table and an efficient acquisition scheme. A gradient-echo MR pulse sequence is applied with lateral (left-right (L/R)) frequency-encoding direction and slab selection along the direction of motion. Compensation for the table motion is achieved by a combination of slab tracking and data alignment in hybrid space. The method allows fast k-space coverage to be achieved, especially when a short sampling FOV is chosen along the direction of table motion, as is desirable for good image quality. The method can be incorporated into different acquisitions schemes, including segmented k-space scanning, which allows for contrast variation with the use of magnetization preparation. Head-to-toe images of volunteers were obtained with good quality using 3D spoiled gradient-echo sequences. As an example of magnetization-prepared imaging, fat/water separated images were acquired using chemical shift selective (CHESS) presaturation pulses.     

Efficient fat suppression by slice‐selection gradient reversal in twice‐refocused diffusion encoding

Most diffusion imaging sequences rely on single‐shot echo‐planar imaging (EPI) for spatial encoding since it is the fastest acquisition available. However, it is sensitive to chemical‐shift artifacts due to the low bandwidth in the phase‐encoding direction, making fat suppression necessary. Often, spectral‐selective RF pulses followed by gradient spoiling are used to selectively saturate the fat signal. This lengthens the acquisition time and increases the specific absorption rate (SAR). However, in pulse sequences that contain two slice‐selective 180° refocusing pulses, the slice‐selection gradient reversal (SSGR) method of fat suppression can be implemented; i.e., using slice‐selection gradients of opposing polarity for the two refocusing pulses. We combined this method with the twice‐refocused spin‐echo sequence for diffusion encoding and tested its performance in both phantoms and in vivo. Unwanted fat signal was entirely suppressed with this method without affecting the water signal intensity or the slice profile. Magn Reson Med 60:1256–1260, 2008. © 2008 Wiley‐Liss, Inc.     

Spatially varying fat‐water excitation using short 2DRF pulses

Conventional spatial‐spectral radiofrequency pulses excite the water or the fat spins in a whole slice or slab. While such pulses prove useful in a number of applications, their applicability is severely limited in sequences with short pulse repetition time due to the relatively long duration of the pulses. In the present work, we demonstrate that, by manipulating the parameters of a two‐dimensional spartially‐selective (2DRF) pulse designed to excite a two‐dimensional spatial profile, the chemical‐shift sensitivity of the pulse can be exploited to obtain potentially useful spatially varying fat‐water excitation patterns. Magn Reson Med 63:1092–1097, 2010. © 2010 Wiley‐Liss, Inc.     

Fat‐free MRI based on magnetization exchange

An MRI technique is proposed for complete fat signal elimination. This approach exploits the fact that water rapidly exchanges magnetization with protons in protein and membrane phospholipid of tissue and cells but does not exchange magnetization with triglyceride or fat protons in the tissue. Saturation of the proton signal from protein and membrane phospholipid thus results in partial saturation of the water proton signal, allowing acquisition of an image including a portion of the water signal and the full fat signal. Subtraction of this image from the standard image, containing both water and fat signals, results in an image in which all fat signal is cancelled. This fat‐free image is sensitive to magnetization transfer and to water density and relaxation time, providing the possibility of additional contrast. Unlike most fat suppression techniques, this method is not compromised by the static or radiofrequency field heterogeneity and is equally efficient for all fat resonances independent of their chemical shift frequency. Magn Reson Med, 2010. © 2010 Wiley‐Liss, Inc.     

k‐space water‐fat decomposition with T2* estimation and multifrequency fat spectrum modeling for ultrashort echo time imaging

Purpose:

To demonstrate the feasibility of combining a chemical shift‐based water‐fat separation method (IDEAL) with a 2D ultrashort echo time (UTE) sequence for imaging and quantification of the short T₂ tissues with robust fat suppression.

Materials and Methods:

A 2D multislice UTE data acquisition scheme was combined with IDEAL processing, including T₂* estimation, chemical shift artifacts correction, and multifrequency modeling of the fat spectrum to image short T₂ tissues such as the Achilles tendon and meniscus both in vitro and in vivo. The integration of an advanced field map estimation technique into this combined method, such as region growing (RG), is also investigated.

Results:

The combination of IDEAL with UTE imaging is feasible and excellent water‐fat separation can be achieved for the Achilles tendon and meniscus with simultaneous T₂* estimation and chemical shift artifact correction. Multifrequency modeling of the fat spectrum yields more complete water‐fat separation with more accurate correction for chemical shift artifacts. The RG scheme helps to avoid water‐fat swapping.

Conclusion:

The combination of UTE data acquisition with IDEAL has potential applications in imaging and quantifying short T₂ tissues, eliminating the necessity for fat suppression pulses that may directly suppress the short T₂ signals. J. Magn. Reson. Imaging 2010;31:1027–1034. ©2010 Wiley‐Liss, Inc.     

Fast oxygen-enhanced multislice imaging of the lung using parallel acquisition techniques.

The purpose of this study was to evaluate an optimized multislice acquisition technique for oxygen-enhanced MRI of the lung using slice-selective inversion and refocusing pulses in combination with parallel imaging. An inversion recovery HASTE sequence was implemented with respiratory triggering to perform imaging in end-expiration and with ECG triggering to avoid image acquisition during the systolic phase. Inversion pulses and the readout of echo trains could be interleaved to decrease acquisition time. The sequence was evaluated in 15 healthy volunteers, comparing three acquisition schemes: (1) acquisition of four slices without parallel imaging; (2) acquisition of four slices with parallel imaging; (3) acquisition of six slices with parallel imaging. These multislice acquisitions were repeated 80 times with alternating inhalation of room air and oxygen. The oxygen-induced signal increase showed no significant difference with and without parallel imaging. However, only with parallel imaging did the interleaved acquisition of six or more slices become possible, thus enabling a more complete anatomic coverage of the lung. The average required end-expiration time per repetition to acquire six slices could be significantly reduced from 4112 ms without to 2727 ms with parallel imaging. Total acquisition time varied between 8 and 13 min depending on the respiratory frequency.     

Optimized three‐dimensional fast‐spin‐echo MRI

Spin‐echo‐based acquisitions are the workhorse of clinical MRI because they provide a variety of useful image contrasts and are resistant to image artifacts from radio‐frequency or static field inhomogeneity. Three‐dimensional (3D) acquisitions provide datasets that can be retrospectively reformatted for viewing in freely selectable orientations, and are thus advantageous for evaluating the complex anatomy associated with many clinical applications of MRI. Historically, however, 3D spin‐echo‐based acquisitions have not played a significant role in clinical MRI due to unacceptably long acquisition times or image artifacts associated with details of the acquisition method. Recently, optimized forms of 3D fast/turbo spin‐echo imaging have become available from several MR‐equipment manufacturers (for example, CUBE [GE], SPACE [Siemens], and VISTA [Philips]). Through specific design strategies and optimization, including short non–spatially selective radio‐frequency pulses to significantly shorten the echo spacing and variable flip angles for the refocusing radio‐frequency pulses to suppress blurring or considerably lengthen the useable duration of the spin‐echo train, these techniques permit single‐slab 3D imaging of sizeable volumes in clinically acceptable acquisition times. These optimized fast/turbo spin‐echo pulse sequences provide a robust and flexible approach for 3D spin‐echo‐based imaging with a broad range of clinical applications. J. Magn. Reson. Imaging 2014;39:745–767. © 2014 Wiley Periodicals, Inc .     

High-resolution DTI with 2D interleaved multislice reduced FOV single-shot diffusion-weighted EPI (2D ss-rFOV-DWEPI).

Diffusion tensor MRI (DTI), using single-shot 2D diffusion weighted-EPI (2D ss-DWEPI), is limited to intracranial (i.c.) applications far from the sinuses and bony structures, due to the severe geometric distortions caused by significant magnetic field inhomogeneities at or near the tissue-air or tissue-bone interfaces. Reducing these distortions in single-shot EPI by shortening the readout period generally requires a reduced field of view (and the potential of wraparound artifact) in the phase-encoding direction and/or reduced spatial resolution. To resolve the problem, a novel 2D reduced FOV single-shot diffusion-weighted EPI (2D ss-rFOV-DWEPI) pulse sequence applicable for high resolution diffusion-weighted MRI of local anatomic regions, such as brainstem, cervical spinal cord, and optic nerve, has been developed. In the proposed technique, time-efficient interleaved acquisition of multiple slices with a limited FOV was achieved by applying an even number of refocusing 180 degrees pulses with the slice-selection gradient applied in the phase-encoding direction. The two refocusing pulses used for each slice acquisition were separated by a short time interval (typically less than 45 ms) required for the 2D EPI echotrain acquisition. The new technique can be useful for high resolution DTI of various anatomies, such as localized brain structures, cervical spinal cord, optic nerve, heart, or other extra-cerebral organ, where conventional 2D ss-DWEPI is limited in usage due to the severity of image distortions.     

Saturation‐recovery metabolic‐exchange rate imaging with hyperpolarized [1‐13C] pyruvate using spectral‐spatial excitation

Within the last decade hyperpolarized [1‐¹³C] pyruvate chemical‐shift imaging has demonstrated impressive potential for metabolic MR imaging for a wide range of applications in oncology, cardiology, and neurology. In this work, a highly efficient pulse sequence is described for time‐resolved, multislice chemical shift imaging of the injected substrate and obtained downstream metabolites. Using spectral‐spatial excitation in combination with single‐shot spiral data acquisition, the overall encoding is evenly distributed between excitation and signal reception, allowing the encoding of one full two‐dimensional metabolite image per excitation. The signal‐to‐noise ratio can be flexibly adjusted and optimized using lower flip angles for the pyruvate substrate and larger ones for the downstream metabolites. Selectively adjusting the excitation of the down‐stream metabolites to 90° leads to a so‐called “saturation‐recovery” scheme with the detected signal content being determined by forward conversion of the available pyruvate. In case of repetitive excitations, the polarization is preserved using smaller flip angles for pyruvate. Metabolic exchange rates are determined spatially resolved from the metabolite images using a simplified two‐site exchange model. This novel contrast is an important step toward more quantitative metabolic imaging. Goal of this work was to derive, analyze, and implement this “saturation‐recovery metabolic exchange rate imaging” and demonstrate its capabilities in four rats bearing subcutaneous tumors. Magn Reson Med, 2013. © 2012 Wiley Periodicals, Inc.     

Myocardial fat quantification in humans: Evaluation by two‐point water‐fat imaging and localized proton spectroscopy

Proton MR spectroscopy (¹H‐MRS) has been used for in vivo quantification of intracellular triglycerides within the sarcolemma. The purpose of this study was to assess whether breath‐hold dual‐echo in‐ and out‐of‐phase MRI at 3.0 T can quantify the fat content of the myocardium. Biases, including T₁, T*₂, and noise, that confound the calculation of the fat fraction were carefully corrected. Thirty‐four of 46 participants had both MRI and MRS data. The fat fractions from MRI showed a strong correlation with fat fractions from MRS (r = 0.78; P < 0.05). The mean myocardial fat fraction for all 34 subjects was 0.7 ± 0.5% (range: 0.11–3%) assessed with MRS and 1.04 ± 0.4% (range: 0.32–2.44%) assessed with in‐ and out‐of‐phase MRI (P < 0.05). Scanning times were less than 15 sec for Dixon imaging, plus an additional minute for the acquisition used for T*₂ calculation, and 15‐20 min for MRS. The average postprocessing time for MRS was 3 min and 5 min for MRI including T*₂ measurement. We conclude that the dual echo method provides a rapid means to detect and quantifying myocardial fat content in vivo. Correction/adjustment for field inhomogeneity using three or more echoes seems crucial for the dual echo approach. Magn Reson Med 63:892–901, 2010. © 2010 Wiley‐Liss, Inc.     

Noise removal in magnetic resonance diffusion tensor imaging.

Although promising for visualizing the structure of ordered tissues, MR diffusion tensor imaging (DTI) has been hampered by long acquisition time and low spatial resolution associated with its inherently low signal-to-noise ratio (SNR). Moreover, the uncertainty in the DTI measurements has a direct impact on the accuracy of structural renderings such as fiber streamline tracking. Noise removal techniques can be used to improve the SNR of DTI without requiring additional acquisitions, albeit most low-pass filtering methods are accompanied by undesirable image blurring. In the present study, a modified vector-based partial-differential-equation (PDE) filtering formalism was implemented for smoothing DTI vector fields. Using an image residual-energy criterion to equate the degree of smoothing and error metrics empirically derived from DTI data to quantify the relative performances, the effectiveness in denoising DTI data is compared among image-based and vector-based PDE and fixed and adaptive low-pass k-space filtering. The results demonstrate that the edge-preservation feature of the PDE approach can be highly advantageous in enhancing DTI measurements, particularly for vector-based PDE filtering in applications relying on DTI directional information. These findings suggest a potential role for the postprocessing enhancement technique to improve the practical utility of DTI.     

Homodyne reconstruction and IDEAL water-fat decomposition.

Multipoint water-fat separation methods have received renewed interest because they provide uniform separation of water and fat despite the presence of B0 and B1 field inhomogeneities. Unfortunately, full-resolution reconstruction of partial k-space acquisitions has been incompatible with these methods. Conventional homodyne reconstruction and related algorithms are commonly used to reconstruct partial k-space data sets by exploiting the Hermitian symmetry of k-space in order to maximize the spatial resolution of the image. In doing so, however, all phase information of the image is lost. The phase information of complex source images used in a water-fat separation acquisition is necessary to decompose water from fat. In this work, homodyne imaging is combined with the IDEAL (iterative decomposition of water and fat with echo asymmetry and least squares estimation) method to reconstruct full resolution water and fat images free of blurring. This method is extended to multicoil steady-state free precession and fast spin-echo applications and examples are shown.     

A simple low‐SAR technique for chemical‐shift selection with high‐field spin‐echo imaging

We have discovered a simple and highly robust method for removal of chemical shift artifact in spin‐echo MR images, which simultaneously decreases the radiofrequency power deposition (specific absorption rate). The method is demonstrated in spin‐echo echo‐planar imaging brain images acquired at 7 T, with complete suppression of scalp fat signal. When excitation and refocusing pulses are sufficiently different in duration, and thus also different in the amplitude of their slice‐select gradients, a spatial mismatch is produced between the fat slices excited and refocused, with no overlap. Because no additional radiofrequency pulse is used to suppress fat, the specific absorption rate is significantly reduced compared with conventional approaches. This enables greater volume coverage per unit time, well suited for functional and diffusion studies using spin‐echo echo‐planar imaging. Moreover, the method can be generally applied to any sequence involving slice‐selective excitation and at least one slice‐selective refocusing pulse at high magnetic field strengths. The method is more efficient than gradient reversal methods and more robust against inhomogeneities of the static (polarizing) field (B₀). Magn Reson Med, 2010. © 2010 Wiley‐Liss, Inc.     

Diffusion tensor imaging (DTI) with retrospective motion correction for large-scale pediatric imaging

Purpose:

To develop and implement a clinical DTI technique suitable for the pediatric setting that retrospectively corrects for large motion without the need for rescanning and/or reacquisition strategies, and to deliver high‐quality DTI images (both in the presence and absence of large motion) using procedures that reduce image noise and artifacts.

Materials and Methods:

We implemented an in‐house built generalized autocalibrating partially parallel acquisitions (GRAPPA)‐accelerated diffusion tensor (DT) echo‐planar imaging (EPI) sequence at 1.5T and 3T on 1600 patients between 1 month and 18 years old. To reconstruct the data, we developed a fully automated tailored reconstruction software that selects the best GRAPPA and ghost calibration weights; does 3D rigid‐body realignment with importance weighting; and employs phase correction and complex averaging to lower Rician noise and reduce phase artifacts. For select cases we investigated the use of an additional volume rejection criterion and b‐matrix correction for large motion.

Results:

The DTI image reconstruction procedures developed here were extremely robust in correcting for motion, failing on only three subjects, while providing the radiologists high‐quality data for routine evaluation.

Conclusion:

This work suggests that, apart from the rare instance of continuous motion throughout the scan, high‐quality DTI brain data can be acquired using our proposed integrated sequence and reconstruction that uses a retrospective approach to motion correction. In addition, we demonstrate a substantial improvement in overall image quality by combining phase correction with complex averaging, which reduces the Rician noise that biases noisy data. J. Magn. Reson. Imaging 2012;36:961–971. © 2012 Wiley Periodicals, Inc.     

SNR‐optimized phase‐sensitive dual‐acquisition turbo spin echo imaging: A fast alternative to FLAIR

Phase‐sensitive dual‐acquisition single‐slab three‐dimensional turbo spin echo imaging was recently introduced, producing high‐resolution isotropic cerebrospinal fluid attenuated brain images without long inversion recovery preparation. Despite the advantages, the weighted‐averaging‐based technique suffers from noise amplification resulting from different levels of cerebrospinal fluid signal modulations over the two acquisitions. The purpose of this work is to develop a signal‐to‐noise ratio‐optimized version of the phase‐sensitive dual‐acquisition single‐slab three‐dimensional turbo spin echo. Variable refocusing flip angles in the first acquisition are calculated using a three‐step prescribed signal evolution while those in the second acquisition are calculated using a two‐step pseudo‐steady state signal transition with a high flip‐angle pseudo‐steady state at a later portion of the echo train, balancing the levels of cerebrospinal fluid signals in both the acquisitions. Low spatial frequency signals are sampled during the high flip‐angle pseudo‐steady state to further suppress noise. Numerical simulations of the Bloch equations were performed to evaluate signal evolutions of brain tissues along the echo train and optimize imaging parameters. In vivo studies demonstrate that compared with conventional phase‐sensitive dual‐acquisition single‐slab three‐dimensional turbo spin echo, the proposed optimization yields 74% increase in apparent signal‐to‐noise ratio for gray matter and 32% decrease in imaging time. The proposed method can be a potential alternative to conventional fluid‐attenuated imaging. Magn Reson Med, 2013. © 2012 Wiley Periodicals, Inc.