云南大理白族HLA-DRB1、-DQB1等位基因多态性分析

目的:了解白族人群人类白细胞抗原(Human leukocyte antigen,HLA) Ⅱ类基因-DRB1、-DQB1位点的遗传多态性.方法:采用PCR-SSP方法对124名云南大理洱源白族健康个体进行HLA-DRB1、-DQB1等位基因分型.结果:共检出21种DRB1等位基因,15种DQB1等位基因.其中主要的等位基因有DRB1*1202(26.61%)、DRB1*0901(13.89%)、DRB1*0803(9.92%)、DQB1*0301(31.45%)、DQB1*0601(10.08%)和DQB1*0401(8.06%).主要单倍型包括DRB1*1202-DQB1*0301(20.08%)和DRB1*0803-DQB1*0601(7.19%).结论:大理白族同其他10个民族群体HLA-DRB1、DQB1频率比较和聚类分析显示大理白族属于中国南方人群,但与其他群体存在一定的遗传距离,有着独特的HLA基因特性,对群体遗传及疾病相关性研究具有参考意义.     

Hardy-Weinberg testing for HLA class II (DRB1, DQA1, DQB1, and DPB1) loci in 26 human ethnic groups

Testing the fit of population data to Hardy-Weinberg proportions is crucial in the validation of many current approaches in population genetic studies. In this paper, we tested fit to Hardy-Weinberg proportions using exact approaches for both the overall and individual heterozygote genotype data of four HLA Class II loci: DRB1, DQA1, DQB1, and DPB1, from 26 human populations. Eighty of 99 overall tests fit the Hardy-Weinberg expectation (73% for DRB1, 89% for DQA1, 81% for DQB1 and 81% for DPB1). Deviations from Hardy-Weinberg proportions were both locus and group specific. Although we could not rule out other mechanisms at work, the individual test results indicated that the departure was possibly partly due to recent admixture. Evidence for selection and other sources of deviation are also discussed.     

HLA polymorphism in six ethnic groups from Pakistan

The extreme polymorphism found at some of the loci of the HLA system has made it an invaluable tool for population genetic analyses. In this study the genetic polymorphism of six Pakistani ethnic groups was investigated at the HLA-A, -B, -C, -DRB and DQB1 loci using polymerase chain reaction with sequence specific primers. The groups included in this study are the Baloch, Brahui and Sindhi from the south and the Burusho, Kalash and Pathan from the north of Pakistan. The allele frequencies, three-locus haplotype frequencies for HLA-A, -C, -B and HLA-A, -B, -DRB1 are given. Variation in the allele and haplotype distribution between the six Pakistani ethnic groups was observed. A phylogenetic tree and correspondence analysis based on HLA-A, -B, -C, -DRB1 and -DQB1 allele frequencies revealed the Kalash population to be distinct from the remaining Pakistani populations. The Baloch and Brahui were closely related to one another. The Sindhi were closer to the Pathan and Burusho populations than to the neighboring Baloch and Brahui populations, indicating admixture between the northern and southern populations of Pakistan. A phylogenetic tree and correspondence analysis comparing the Pakistani populations with various other world populations showed that the Pakistani ethnic groups lie within the cluster of Asian Indian populations. The three-locus haplotypes found in the Pakistani populations suggest an influence from Caucasian and Oriental populations.     

Distribution of HLA-DRB1, DPB1 and DQB1 alleles and haplotypes in Mongolian Minority in China

HLA-DRB1, -DQB1 and -DPB1 allele frequencies and estimated haplotype frequencies from 496 unrelated healthy Mongol subjects who living in Inner Mongolia Autonomous Region of China has been reported. HLA genes were genotyped using high-resolution sequence-based typing method. Chinese-Mongolian belongs to northern group of East Asians, but with its specific HLA-DRB1, DPB1 and DQB1 alleles and haplotypes characteristic.     

HLA-DRB1, DQA1, DQB1 DNA polymorphism in the Bulgarian population

We describe for the first time the use of PCR based techniques to analyze the MHC class II polymorphism of the Bulgarian population. The present study provides the HLA-DRB, DQB1 allele frequencies in 116 Bulgarian individuals and DQA1 alleles frequencies in 100 subjects. DNA from these individuals was typed for DRB and DQB1 typed by the PCR- Allele Specific Amplification (PCR-ASA) method and DQA1 by PCR followed by hybridization using Sequence Specific Oligonucleotides (PCR-SSO). Allele and haplo-type frequencies and linkage disequilibria are computed by the standard methods used for the XIth International Histocompatibility Workshop. The highest frequencies are 0.159, 0.109 and 0.085 for DRB1*1101, DRB1*1601 and DRB1*1301 respectively. Among the eight DQA1 alleles detected, DQA1*0501 (0.344) is found to be much more frequent than the two most frequent alleles DQA1*0102 (0.225) and DQA1*0101 (0.151). Twelve DQB1 alleles are found and three of them, DQB1*0301 (0.280), DQB1*0502 (0.153) and DQB1*0201 (0.133) showed the highest frequencies. The haplo-type DRB1*1101-DQA1*0501-DQB1*0301 (0.079) predominate clearly, followed by DRB1*1601-DQA1*0102-DDQB1*0502 (0.055) and DRB1*0101-DQA1*0101-DQB1*0501. These results indicate that the Bulgarian population is characterized by features representative of the European anthropological type with a substantial contribution from the Southern Belt of Europe.     

云南昆明白族、汉族、彝族儿童HLA—DQA 1等位基因多态性分析

为了解昆明白族、汉族、彝族儿童HLA-DQA1等位基因多态性.采用PCR-SSP技术对昆明地区无血缘关系的3个民族儿童的HLA-DQA1等位基因进行分析.结果显示3个民族儿童HLA-DQA1基因位点上共检出14种等位基因.其中昆明白族儿童HLA-DQA1最常见的等位基因为＊0601（16.67%）,高频等位基因为＊0103、＊0102、＊0303;昆明汉族儿童HLA-DQA1最常见的等位基因为＊0302（26.67%）,高频等位基因为＊0103、＊0601;昆明彝族儿童HLA-DQA1最常见的等位基因为＊0601（38.57%）,除＊0601外没有高频等位基因,余基因频率均小余10%,同时在基因排序上3个民族也存在着差异.结果提示,昆明地区3个民族儿童HLA-DQA1基因分布既有共同特点,又有其独特性.     

昆明彝族人群HLA-DRB1、DQB1基因多态性

目的　调查昆明彝族 HL A- DRB1、DQB1基因的多态性。方法　应用聚合酶链反应 -序列特异性引物基因分型技术 ,对昆明地区 70名彝族健康儿童进行了 HL A- DRB1、DQB1位点的基因分型。结果在 HL A- DRB1位点共检出了 12种等位基因 ,其中等位基因频率大于 10 %的依次为 HL A- DRB1* 12 (33.5 7% )、DRB1* 0 90 1(11.4 3% )、DRB1* 0 4 (11.4 3% ) ,等位基因频率大于 5 %而小于 10 %的依次为 DRB1* 0 1(8.5 7% )、DRB1* 11(7.86 % )、DRB1* 14 (7.14 % )、DRB1* 15 (7.14 % )、DRB1* 0 8(5 % ) ,等位基因频率小于 5 %依次为 HL A- DRB1* 0 3(2 .86 % )、DRB1* 13(2 .14 % )、DRB1* 0 7(1.4 3% )、DRB1* 16 (1.4 3% )。在 HL A- DQB1位点共检出了 7种等位基因 ,其中等位基因频率大于 10 %的依次为 HL A- DQB1*0 30 1(45 % )、DQB1* 0 5 (2 2 .14 % )、DQB1* 0 30 3(12 .14 % ) ,等位基因频率大于 5 %而小于 10 %的依次为DQB1* 0 4 (6 .4 3% )、DQB1* 0 6 (6 .4 3% ) ,等位基因频率小于 5 %的依次为 DQB1* 0 2 0 1(4.2 9% )、DQB1* 0 30 2 (3.5 7% )。结论　昆明彝族 HL A基因多态性分布不同于北方汉族人群 ,也不同于南方汉族人群 ,有其独特性。     

A novel HLA-DQB1 allele,DQB1*05022, isolated from the Jing ethnic group in South-west China

A novel DQB1 allele, DQB1*05022, has been identified from an individual of the Jing ethnic group in South-west China. The sequence was confirmed by cloning and sequencing. The allele differs from DQB1*05021 at codon 47 (TAC to TAT) and from DQB1*05031 at codon 57 (GAC to AGC).     

HLA-DRB1, DQA1 and DQB1 DNA polymorphisms in healthy Algerian and genetic relationships with other populations

Abstract: This study presents the results of HLA-DRB1, -DQA1, and -DQB1 sequence-specific oligonucleotide probe (SSOP) typings for a population sample of 47 individuals originating from Western Algeria. Allele and haplotype frequencies, as well as linkage disequilibria are computed by the standard methods used for the XIth International Histocompatibility Workshop data. A total of 24 alleles are detected at the DRB1 locus, where a very high heterozygosity level (0.914) is found. The highest DRB1 frequencies are 0.160, DRB1*1101, and 0.138, for DRB1*0301 and DRB1*0701. The DQA1 and DQB1 loci are less polymorphic. Among the 8 DQA1 alleles detected, DQA1*0501 is highly predominant with a frequency of 0.383. Thirteen DQB1 alleles are observed among which DQB1*0301 and DQB1*0201 are the most frequent (0.351 and 0.245, respectively). Three haplotypes predominate clearly: DRB1*1101-DQA1*0501-DQB1*0301 (0.138), DRB1*0701-DQA1*0201-DQB1*0201 (0.128) and DRB1*0301-DQA1*0501-DQB1*0201 (0.117). The two latter are among the most frequent haplotypes found in European and North American Caucasoid populations, but the DQA1*0501-DQB1*0201 association is not significant in Algerians. The genetic distances computed for each locus among a set of populations from different continents are significantly correlated to geography. They indicate that the Algerians are very close to South European populations, particularly to Sardinians, Italians, Romanians and French, with some intermediate characteristics between Europeans and sub-Saharan Africans. These results may serve as reference for future studies of HLA and disease in the Algerian population.     

HLA-A, HLA-B, and HLA-DRB1 alleles and haplotypes in Naxi and Han populations in southwestern China (Yunnan province)

The frequencies of the human leukocyte antigen alleles HLA-A, HLA-B, and HLA-DRB1 and the A-B-DRB1, A-B, and B-DRB1 haplotypes were studied in Naxi and Yunnan Han populations using polymerase chain reaction (PCR)-sequence-specific amplification for alleles A and B and a PCR-microtiter plate hybridization method for the DRB1 allele. A total of 8 A, 19 B, and 30 DRB1 alleles were found in the Naxi population, and 15 A, 21 B, and 36 DRB1 alleles were found in Yunnan Han population. The common A-B-DRB1 haplotypes in the Naxi population were A*24-B*15-DRB1*1202, A*11-B*15-DRB1*0405, A*11-B*15-DRB1*1202, A*11-B*38-DRB1*08032, and A*11-B*55-DRB1*0405; the common A-B haplotypes were A*11-B*15, A*11-B*38, and A*24-B*15; and the common B-DRB1 haplotypes were B*15-DRB1*1202, B*38-DRB1*08032, and B*48-DRB1*1201. In the Yunnan Han population, the common A-B-DRB1 haplotypes were A*24-B*15-DRB1*1501, A*24-B*46-DRB1*08032, and A*24-B*15-DRB1*1201; the common A-B haplotypes were A*24-B*15, A*24-B*46, and A*34-B*46; and the common B-DRB1 haplotypes were B*15-DRB1*1501, B*46-DRB1*09012, and B*46-DRB1*1401. Phylogenetic tree and principal component analyzes based on HLA-A, HLA-B, and DRB1 allele frequencies suggested that the Naxi ethnic group belongs to the southern Chinese groups, while the Yunnan Han population is a characteristic population located intermediate between northern and southern Chinese groups, although they live in the southwest of China.     

广西壮族HLA-DRB1基因的多态性及其与主要周边民族的比较

目的通过比较壮族和主要周边民族HLA-DRB1座位的等位基因多态性，探讨壮族的起源、迁徙及其与周围民族的关系。方法应用PCR-序列特异引物(PCR-SSP)对广西壮族265名健康、无血缘关系、随机抽样的广西籍壮族成年人(17～32岁)进行HLA-DRB1等位基因分型并进行相应等位基因频率的比较。结果在所设计的23对引物中共检出13个HLA-DRB1等位基因，未检出的等位基因亦为13个。频率最高的等位基因依次是HLA-DRB1*1501、-DRB1*1601／2和-DRB1*1401／4．分别为0．291、0．198和0．106；HLA-DRB1*0701／2、-DRB1*08和-DRB1*1306／1406虽检出，但数量很少；壮族人HLA-DRB1座位等位基因总的分布格局与布依族最接近，其次是泰国东北部群体、中国南方汉族及新加坡华人，与北方汉族和越南河内京族则相差较远。另外，HLA-DRB1*1502等位基因的空白是壮族异于东南亚群体的特征性之一。结论极为相似的HLA-DRB1背景提示壮族和布依族之间密切的遗传学关系。     

云南昆明白族和汉族儿童HLA-DRB1、HLA-DQB1位点基因多态性比较

目的研究昆明白族、汉族人群HLA—DRB1、HLA-DQB1位点的遗传特征。方法采用序列特异性引物（PCR-SSP）方法对昆明70名白族、72名汉族儿童的HLA-DRB1、HLA-DQB1位点等位基因进行分析。结果在HLA-DRB1位点上,昆明白族儿童共检出13个等位基因,汉族检出12个;在HLA-DQB1位点上两组均检出7个等位基因。组间比较HLA—DRB1／DQB1等位基因总体分布及诸多等位基因频率均有显著差异。结论昆明白族和汉族儿童在HLA—DRB1、DQB1等位基因频率分布上既有相似性,又存在差异性。     

北方汉族HLA-DRB1、DQB1基因多态性的研究

目的从基因水平了解北方汉族ＨＬＡ－ＤＲＢ１、ＤＱＢ１多态性分布,获得更完整、更准确的遗传学数据。方法应用ＰＣＲ－ＳＳＰ方法对１０７名北方汉族健康人进行了ＨＬＡ－ＤＲＢ１、ＤＱＢ１等位基因分型。结果鉴定了１４个ＤＲＢ１等位基因,９个ＤＱＢ１等位基因,包括了ＤＲ、ＤＱ位点的全部血清学特异性。结论提供了一套比较完整准确的ＤＲＢ１、ＤＱＢ１等位基因的基因频率和连锁不平衡参数。对群体遗传和疾病关联的研究具有重要的意义。     

HLA-A, -B, and -DRB1 polymorphism defined by sequence-based typing of the Han population in Northern China

DNA typing for human leukocyte antigen (HLA)-A, -B and -DRB1 was performed using polymerase chain reaction-sequence-based typing method on 618 randomly selected healthy individuals of the Han population in Northern China. Allele frequencies and haplotypes were statistically analyzed. A total of 84 HLA-A alleles, 143 B alleles, and 122 DRB1 alleles were detected, and 853 A-B-DRB1 haplotypes, 473 A-B haplotypes, and 551 B-DRB1 haplotypes were statistically inferred. Statistical analysis of three-locus haplotypes showed that A*0207-B*4601-DRB1*0901 (3.06%) was the most predominant. Gene frequencies and haplotypic associations within HLA-A, -B, and -DRB1 loci were determined at a high-resolution (four digit) allelic level and should provide useful information in anthropology, bone marrow donor registry, legal medicine, and disease association studies.     

HLA-DRB1, -DQB1 and -DPB1 polymorphism in the Slovak population

Abstract: HLA-DRB1, -DQB1 and -DPB1 allele frequencies were investigated in a sample of the Slovak population by PCR-SSP and PCR-RFLP methods. The most frequent DRB1 alleles were DRBl*1101–5 (0.2038), DRBl*0701–2 (0.1423), and DRBl*1501–2 (0.1231). The most rare alleles found were DRBl*0901 (0.0038), and DRB1*1201 (0.015). The most common DQB1 alleles were DQBl*0301 (0.2448), DQB1*0201 (0.2098), and DQB1*0501 (0.1119), respectively. The alleles with the least occurrence rate were DQBl*0601 (0.0035) and DQB1*0401 (0.007). The most common DPB1 alleles found were DPBl*0401 (0.4329), DPBl*0402 (0.2089), and DPB1*0201 (0.1438), respectively. The least frequent alleles were DPBl*0601, *1101, and *1501 (0.0034). Allele frequencies found in our study were compared to those in Czech, Austrian, and German populations. No statistically significant differences were observed.     

HLA-DRB1和HLA—DQB1基因与肿瘤的关联性研究

目的通过对42例肿瘤患者HLA-DRBl和HLA—DQB1座位的18个等位基因位点的检测,探讨HLA—DRB1和HLA—DQB1基因多态性与肿瘤的关联性。方法采用PCR—SSP技术,检测42例肿瘤患者的HLA—DRB1l和HLA—DQB1基因位点18个,并以100例健康人作为对照。结果肿瘤HLA—DQB1＊03型频率的65．5％,高于对照组的42．0％,RR=2．62,P〈0．0001;肿瘤组HLA—DQB1％06型频率为10．7％,明显低于对照组的24．0％,RR=0．38,P=0．010。结论HLA-DQB1＊03可能是肿瘤的易感基因,HLA-DQB1＊06可能是肿瘤的抗性基因。     

西藏门巴族人群HLA-A、B和DRB1基因座多态性

目的 分析西藏门巴族HLA-A、B和DRB1 3个基因座的遗传特征，并研究其民族起源。方法应用序列特异性寡核苷酸探针反向斑点杂交技术对西藏自治区门巴族居住区47名门巴族无关个体HLA-A、B和DRB1基因座进行分型。对门巴族和我国其他11个群体(民族)的HLA-DRB1基因频率采用Neighbor-Joining(NJ)方法进行聚类分析。结果 在西藏门巴族人群中HLA-A基因座共检出23个等位基因，其中HLA-A*1101，A*2402，A*02011，A*0206基因最常见；HLA-B基因座共检出39个等位基因，其中HLA-B*3802，B*4001，B*4002，B*51011基因最常见；HLA-DRB1基因座共检出33个等位基因，其中HLA-DRB1*12021，DRB1*0403，DRB1*0701，DRB1*1201基因最常见，频率最高的等位基因分别是HLA-A*1101(0．2128)，HLA-B*3802(0．1064)和HLA-DRB1*12021(0．0851)。结论 西藏门巴族人群HLA基因座具有高度遗传多态性，聚类分析门巴族与西藏藏族遗传关系较近。     

内蒙古地区鄂温克族人群HLA-DRB1基因多态性

目的对内蒙古鄂温克族人群人类白细胞抗原（human leukocyte antigen，HLA）Ⅱ类基因DRB1位点进行基因型检测。方法采用DNA序列分析的分型技术（sequencing based typing，SBT），对84名鄂温克族个体进行分析。结果DRB1等位基因中，共检出25种等位基因，内蒙古鄂温克族以DRB1＊03011（14．88％）的频率最高，其次为DRB1＊09012（13．69％）、＊07011（8．92％）、＊04011（9．52％）、12011（8．33％）。结论鄂温克族人群中HLA—DRB1分布特征有其独特性，为本民族的人类学及疾病相关性研究提供了重要的参考依据。     

HLA-DRB1、DQB1基因与汉族人群寻常型天疱疮的相关性研究

目的　探讨 HL A- DRB1、DQB1位点基因在汉族人群寻常型天疱疮易感性中的作用。方法用序列特异性引物 -聚合酶链反应方法 ,对 6 1例寻常型天疱疮 (pemphigus vulgaris,PV)患者和 5 7名正常对照进行了 HL A- DRB1、DQB1等位基因的分型 ,并分析了 DRB1、DQB1基因在两组中的分布。结果　与正常对照组比较 ,PV组 DR4、DRB1* 14 (* 14 0 1、* 14 0 4、* 14 0 5 )基因频率明显增高 (Pc分别 <0 .0 5及P<0 .0 1) ,差异有显著性 ;PV组 DQB1* 0 5 0 3、DQB1* 0 30 2基因频率明显增高 (Pc均 <0 .0 5 ) ,差异有显著性。对 DR4阳性样本的组内基因亚型分型结果发现 ,PV组中 DRB1* 0 4 0 3、DRB1* 0 4 0 6频率显著增高(Pc<0 .0 5 ) ,差异有显著性。 PV患者组单倍型 HL A- DRB1* 0 4 ,DQB1* 0 30 2和 HL A- DRB1* 14 ,DQB1* 0 5 0 3频率明显增高 (P<0 .0 5 )。结论　HL A- DRB1* 0 4 ,DQB1* 0 30 2和 HL A- DRB1* 14 ,DQB1* 0 5 0 3可能是汉族人 PV推测的易感单倍型。