Optimized distortion correction technique for echo planar imaging.

A new phase-shifted EPI pulse sequence is described that encodes EPI phase errors due to all off-resonance factors, including B(o) field inhomogeneity, eddy current effects, and gradient waveform imperfections. Combined with the previously proposed multichannel modulation postprocessing algorithm (Chen and Wyrwicz, MRM 1999;41:1206-1213), the encoded phase error information can be used to effectively remove geometric distortions in subsequent EPI scans. The proposed EPI distortion correction technique has been shown to be effective in removing distortions due to gradient waveform imperfections and phase gradient-induced eddy current effects. In addition, this new method retains advantages of the earlier method, such as simultaneous correction of different off-resonance factors without use of a complicated phase unwrapping procedure. The effectiveness of this technique is illustrated with EPI studies on phantoms and animal subjects. Implementation to different versions of EPI sequences is also described. Magn Reson Med 45:525-528, 2001.     

Correction for EPI distortions using multi-echo gradient-echo imaging.

A novel and effective technique is described for distortion correction in echo planar imaging (EPI) utilizing the field maps derived from multi-echo gradient-echo images. The distortions from different off-resonance related factors such as field inhomogeneity, eddy current effect, radiofrequency pulse frequency offset, and chemical shift effect can be simultaneously reduced to a great extent. With the proposed post-processing algorithm of multi-channel modulation, distortions may be corrected without unwrapping the phase discontinuities in the derived field map, a process that usually restricts the application of other field map-based correction methods. Results from phantom and animal experiments at 4.7 T demonstrate the efficiency of the method in reducing the geometrical distortions in gradient-echo EPI.     

Distortion correction in EPI at ultra-high-field MRI using PSF mapping with optimal combination of shift detection dimension

Despite its wide use, echo‐planar imaging (EPI) suffers from geometric distortions due to off‐resonance effects, i.e., strong magnetic field inhomogeneity and susceptibility. This article reports a novel method for correcting the distortions observed in EPI acquired at ultra‐high‐field such as 7 T. Point spread function (PSF) mapping methods have been proposed for correcting the distortions in EPI. The PSF shift map can be derived either along the nondistorted or the distorted coordinates. Along the nondistorted coordinates more information about compressed areas is present but it is prone to PSF‐ghosting artifacts induced by large k‐space shift in PSF encoding direction. In contrast, shift maps along the distorted coordinates contain more information in stretched areas and are more robust against PSF‐ghosting. In ultra‐high‐field MRI, an EPI contains both compressed and stretched regions depending on the B₀ field inhomogeneity and local susceptibility. In this study, we present a new geometric distortion correction scheme, which selectively applies the shift map with more information content. We propose a PSF‐ghost elimination method to generate an artifact‐free pixel shift map along nondistorted coordinates. The proposed method can correct the effects of the local magnetic field inhomogeneity induced by the susceptibility effects along with the PSF‐ghost artifact cancellation. We have experimentally demonstrated the advantages of the proposed method in EPI data acquisitions in phantom and human brain using 7‐T MRI. Magn Reson Med, 2012. © 2011 Wiley Periodicals, Inc.     

B0 mapping with multi‐channel RF coils at high field

Mapping the static magnetic field via the phase evolution over gradient echo scans acquired at two or more echo times is an established method. A number of possibilities exist, however, for combining phase data from multi‐channel coils, denoising and thresholding field maps for high field applications. Three methods for combining phase images when no body/volume coil is available are tested: (i) Hermitian product, (ii) phase‐matching over channels, and (iii) a new approach based on calculating separate field maps for each channel. The separate channel method is shown to yield field maps with higher signal‐to‐noise ratio than the Hermitian product and phase‐matching methods and fewer unwrapping errors at low signal‐to‐noise ratio. Separate channel combination also allows unreliable voxels to be identified via the standard deviation over channels, which is found to be the most effective means of denoising field maps. Tests were performed using multichannel coils with between 8 and 32 channels at 3 T, 4 T, and 7 T. For application in the correction of distortions in echo‐planar images, a formulation is proposed for reducing the local gradient of field maps to eliminate signal pile‐up or swapping artifacts. Field maps calculated using these techniques, implemented in a freely available MATLAB toolbox, provide the basis for an effective correction for echo‐planar imaging distortions at high fields. Magn Reson Med, 2011. © 2011 Wiley‐Liss, Inc.     

EPI image reconstruction with correction of distortion and signal losses

PURPOSE: To derive and implement a method for correcting geometric distortions and recovering magnetic resonance imaging (MRI) signal losses caused by susceptibility-induced magnetic field gradients (SFGs) in regions with large static field inhomogeneities in echo-planar imaging (EPI). MATERIALS AND METHODS: Factors to account for field inhomogeneities and SFGs were added in a traditional EPI equation that was a simple Fourier transform (FT) for expressing the actual k-space data of an EPI scan. The inverse calculation of this "distorted EPI" equation was used as a kernel to correct geometric distortions and reductions in intensity during reconstruction. A step-by-step EPI reconstruction method was developed to prevent complicated phase unwrapping problems. Some EPI images of phantom and human brains were reconstructed from standard EPI k-spaces. RESULTS: All images were reconstructed using the proposed multistep method. Geometric distortions were corrected and SFG-induced MRI signal losses were recovered. CONCLUSION: Results suggest that applying our method for reconstructing EPI images to reduce distortions and MRI signal losses is feasible.     

Echo planar imaging at 4 Tesla with minimum acoustic noise

PURPOSE: To minimize the acoustic sound pressure levels of single-shot echo planar imaging (EPI) acquisitions on high magnetic field MRI scanners. MATERIALS AND METHODS: The resonance frequencies of gradient coil vibrations, which depend on the coil length and the elastic properties of the materials in the coil assembly, were measured using piezoelectric transducers. The frequency of the EPI-readout train was adjusted to avoid the frequency ranges of mechanical resonances. RESULTS: Our MRI system exhibited two sharp mechanical resonances (at 720 and 1220 Hz) that can increase vibrational amplitudes up to six-fold. A small adjustment of the EPI-readout frequency made it possible to reduce the sound pressure level of EPI-based perfusion and functional MRI scans by 12 dB. CONCLUSION: Normal vibrational modes of MRI gradient coils can dramatically increase the sound pressure levels during echo planar imaging (EPI) scans. To minimize acoustic noise, the frequency of EPI-readout trains and the resonance frequencies of gradient coil vibrations need to be different.     

Improvements in parallel imaging accelerated functional MRI using multiecho echo‐planar imaging

Multiecho echo‐planar imaging (EPI) was implemented for blood‐oxygenation‐level‐dependent functional MRI at 1.5 T and compared to single‐echo EPI with and without parallel imaging acceleration. A time‐normalized breath‐hold task using a block design functional MRI protocol was carried out in combination with up to four echo trains per excitation and parallel imaging acceleration factors R = 1–3. Experiments were conducted in five human subjects, each scanned in three sessions. Across all reduction factors, both signal‐to‐fluctuation‐noise ratio and the total number of activated voxels were significantly lower using a single‐echo EPI pulse sequence compared with the multiecho approach. Signal‐to‐fluctuation‐noise ratio and total number of activated voxels were also considerably reduced for nonaccelerated conventional single‐echo EPI when compared to three‐echo measurements with R = 2. Parallel imaging accelerated multiecho EPI reduced geometric distortions and signal dropout, while it increased blood‐oxygenation‐level‐dependent signal sensitivity all over the brain, particularly in regions with short underlying T*₂. Thus, the presented method showed multiple advantages over conventional single‐echo EPI for standard blood‐oxygenation‐level‐dependent functional MRI experiments. Magn Reson Med 63:959–969, 2010. © 2010 Wiley‐Liss, Inc.     

View angle tilting echo planar imaging for distortion correction

Geometric distortion caused by field inhomogeneity along the phase‐encode direction is one of the most prominent artifacts due to a relatively low effective bandwidth along that direction in magnetic resonance echo planar imaging. This work describes a method for correcting in‐plane image distortion along the phase‐encode direction using a view angle tilting imaging technique in spin‐echo echo planar imaging. Spin‐echo echo planar imaging with view angle tilting uses the addition of gradient blips along the slice‐select direction, concurrently applied with the phase‐encode gradient blips, producing an additional phase. This phase effectively offsets an unwanted phase accumulation caused by field inhomogeneity, resulting in the removal of image distortion along the phase‐encode direction. The proposed method is simple and straightforward both in implementation and application with no scan time penalty. Therefore, it is readily applicable on commercial scanners without having any customized postprocessing. The efficacy of the spin‐echo echo planar imaging with view angle tilting technique in the correction of image distortion is demonstrated in phantom and in vivo brain imaging. Magn Reson Med, 2012. © 2011 Wiley Periodicals, Inc.     

Reducing distortions in diffusion‐weighted echo planar imaging with a dual‐echo blip‐reversed sequence

The inherent distortions in echo‐planar imaging that arise due to inhomogeneities in the static magnetic field can lead to difficulties when attempting to obtain structurally accurate diffusion‐tensor imaging data. Parallel acceleration techniques can reduce the magnitude of these distortions but do not remove them entirely. Images can be corrected using a measured field map, but this is prone to error. One approach to correcting for these distortions, referred to here as “blip‐reversed” echo‐planar imaging, involves collecting a second set of images with the phase encoding reversed. Here, a novel approach to collecting blip‐reversed echo‐planar imaging data for diffusion‐tensor imaging is presented: a dual‐echo sequence is used in which the phase‐encoding direction of the second echo is swapped compared to the first echo. This allows benefits of the blip‐reversed approach to be exploited, with only a modest increase in scan time and, due to the extra data acquired, no significant loss of signal‐to‐noise efficiency. A novel approach to recombining blip‐reversed data is also presented, which involves refining the measured field map, using an algorithm to minimize the difference between the corrected images. The field map refinement is also applicable to conventionally acquired blip‐reversed sequences. Magn Reson Med, 2010. © 2010 Wiley‐Liss, Inc.     

Simultaneous echo refocusing in EPI.

A method to encode multiple two-dimensional Fourier transform (2D FT) images within a single echo train is presented. This new method, simultaneous echo refocusing (SER), is a departure from prior echo planar image (EPI) sequences which use repeated single-shot echo trains for multislice imaging. SER simultaneously acquires multiple slices in a single-shot echo train utilizing a shared refocusing process. The SER technique acquires data faster than conventional multislice EPI since it uses fewer gradient switchings and fewer preparation pulses such as diffusion gradients. SER introduces a new capability to simultaneously record multiple spatially separated sources of physiologic information in subsecond image acquisitions, which enables several applications that are dependent on temporal coherence in MRI data including velocity vector field mapping and brain activation mapping.     

Real-time autoshimming for echo planar timecourse imaging.

Head motion within an applied magnetic field alters the effective shim within the brain, causing geometric distortions in echo planar imaging (EPI). Even if subtle, change in shim can lead to artifactual signal changes in timecourse EPI acquisitions, which are typically performed for functional MRI (fMRI) or diffusion tensor imaging. Magnetic field maps acquired before and after head motions of clinically realistic magnitude indicate that motion-induced changes in magnetic field may cause translations exceeding 3 mm in the phase-encoding direction of the EPI images. The field maps also demonstrate a trend toward linear variations in shim changes as a function of position within the head, suggesting that a real-time, first-order correction may compensate for motion-induced changes in magnetic field. This article presents a navigator pulse sequence and processing method, termed a "shim NAV," for real-time detection of linear shim changes, and a shim-compensated EPI pulse sequence for dynamic correction of linear shim changes. In vivo and phantom experiments demonstrate the detection accuracy of shim NAVs in the presence of applied gradient shims. Phantom experiments demonstrate reduction of geometric distortion and image artifact using shim-compensated EPI in the presence of applied gradient shims. In vivo experiments with intentional interimage subject motion demonstrate improved alignment of timecourse EPI images when using the shim NAV-detected values to update the shim-compensated EPI acquisition in real time.     

Nonlinear phase correction of navigated multi-coil diffusion images.

Cardiac pulsatility causes a nonrigid motion of the brain. In multi-shot diffusion imaging this leads to spatially varying phase changes that must be corrected. A conjugate gradient based reconstruction is presented that includes phase changes measured using two-dimensional navigator echoes, coil sensitivity information, navigator-determined weightings, and data from multiple coils and averages.A multi-shot echo planar sequence was used to image brain regions where pulsatile motion is not uniform. Reduced susceptibility artifacts were observed compared to a clinical single-shot sequence. In a higher slice, fiber directions derived from single-shot data show distortions from anatomical scans by as much as 7 mm compared to less than 2 mm for our multi-shot reconstructions. The reduced distortions imply that phase encoding can be applied in the shorter left-right direction, enabling time savings through the use of a rectangular field of view. Higher resolution diffusion imaging in the spine permits visualization of a nerve root.     

Vascular interventions guided by ultrafast MR imaging: Evaluation of different materials

The ability of MRI to acquire not only anatomical but also functional information makes MRI guided vascular interventions an interesting goal. Recent developments in ultrafast MR imaging sequences such as fast gradient echo or echo planar (EPI) mean that not only real time MRI but also MRI guided vascular interventions are real possibilities for the not too distant future. However, currently available guide wires and catheters are potentially unusable in MRI because they are either ferromagnetic or MRI invisible. In order to find different materials suitable for real time MRI, various devices were examined with fast gradient echo and interleaved EPI pulse sequences. The measurements were performed using a continuously running, pseudo real time MRI system to investigate the dynamic imaging behavior under guide wire insertion. Suggestions are made as how to construct guide wires and catheters, which can be visualized with ultrafast imaging sequences, while not causing prohibitive artifacts or image distortions.     

PROPELLER-EPI with parallel imaging using a circularly symmetric phased-array RF coil at 3.0 T: application to high-resolution diffusion tensor imaging.

A technique integrating multishot periodically rotated overlapping parallel lines with enhanced reconstruction (PROPELLER) and parallel imaging is presented for diffusion echo-planar imaging (EPI) at high spatial resolution. The method combines the advantages of parallel imaging to achieve accelerated sampling along the phase-encoding direction, and PROPELLER acquisition to further decrease the echo train length (ETL) in EPI. With an eight-element circularly symmetric RF coil, a parallel acceleration factor of 4 was applied such that, when combined with PROPELLER acquisition, a reduction of geometric distortions by a factor substantially greater than 4 was achieved. The resulting phantom and human brain images acquired with a 256 x 256 matrix and an ETL of only 16 were visually identical in shape to those acquired using the fast spin-echo (FSE) technique, even without field-map corrections. It is concluded that parallel PROPELLER-EPI is an effective technique that can substantially reduce susceptibility-induced geometric distortions at high field strength.     

Geometric distortion correction of high-resolution 3 T diffusion tensor brain images.

Diffusion-weighted images based on echo planar sequences suffer from distortions due to field inhomogeneities from susceptibility differences as well as from eddy currents arising from diffusion gradients. In this paper, a novel approach using nonlinear warping based on optic flow to correct distortions of baseline and diffusion weighted echo planar images (EPI) acquired at 3 T is presented. The distortion correction was estimated by warping the echo planar images to the anatomically correct T2-weighted fast spin echo images (T2-FSE). A global histogram intensity matching of the T2-FSE precedes the base line EPI image distortion correction. A local intensity-matching algorithm was used to transform labeled T2-FSE regions to match intensities of diffusion-weighted EPI images prior to distortion correction of these images. Evaluation was performed using three methods: (i) visual comparison of overlaid contours, (ii) a global mutual information index, and (iii) a local distance measure between homologous points. Visual assessment and the global index demonstrated a decrease in geometrical distortion and the distance measure showed that distortions are reduced to a subvoxel level. In conclusion, the warping algorithm is effective in reducing geometric distortions, enabling generation of anatomically correct diffusion tensor images at 3 T.     

High‐resolution fMRI with higher‐order generalized series imaging and parallel imaging techniques (HGS‐parallel)

Purpose

To develop a novel approach for high‐resolution functional MRI (fMRI) using the conventional gradient‐echo sequence.

Materials and Methods

Echo‐planar imaging (EPI) techniques have generally been used for fMRI studies due to their fast imaging time. However, it is difficult for studying brain function at the submillimeter level using this sequence. In addition, EPI techniques have some drawbacks, such as Nyquist ghosts and geometric distortions in the reconstructed images, and subsequently require additional postprocessing to reduce these artifacts. One way of solving these problems is to acquire fMRI data by means of a conventional gradient‐echo imaging sequence instead of EPI. To provide a fast imaging time, the proposed method combines higher‐order generalized series (HGS) imaging with a parallel imaging technique which is called the HGS‐parallel technique.

Results

The proposed HGS‐parallel technique achieves a 12.8‐fold acceleration in imaging time without the cost of spatial resolution. The proposed method was verified through the application of fMRI studies on normal subjects.

Conclusion

This study suggests that the proposed method can be used for high‐resolution fMRI studies without the geometric distortion and the Nyquist ghost artifacts compared to EPI. J. Magn. Reson. Imaging 2009;29:924–936. © 2009 Wiley‐Liss, Inc.     

Multi-echo segmented k-space imaging: an optimized hybrid sequence for ultrafast cardiac imaging.

Cardiac magnetic resonance imaging requires high temporal resolution to resolve motion and contrast uptake with low total scan times to avoid breathing artifacts. While spoiled gradient echo (SPGR) imaging is robust and reproducible, it is relatively inefficient and requires long breath-holds to acquire high time resolution movies of the heart. Echo planar imaging (EPI) is highly efficient with excellent signal-to-noise ratio (SNR) behavior; however, it is particularly difficult to use in the heart because of its sensitivity to chemical shift, susceptibility, and motion. EPI may also require reference scans, which are used to measure hardware delays and phase offsets that cause ghosting artifacts; these reference scans are more difficult and less reliable in the heart. Consequently, a hybrid EPI/SPGR sequence is proposed for application to rapid cardiac imaging. A detailed optimization of SNR and echo train length for multi-echo sequences is presented. It is shown that significant reductions in total scan time are possible while maintaining good image quality. This will allow complete motion sampling of the entire heart in one to three breath-holds, necessary for MR cardiac dobutamine stress testing. Improved speed performance also permits sampling of three to six slices every heartbeat for bolus injection perfusion studies.     

A transmit/receive system for magnetic field monitoring of in vivo MRI

Magnetic field monitoring with NMR probes has recently been introduced as a means of measuring the actual spatiotemporal magnetic field evolution during individual MR scans. Receive‐only NMR probes as used thus far for this purpose impose significant practical limitations due to radiofrequency (RF) interference with the actual MR experiment. In this work these limitations are overcome with a transmit/receive (T/R) monitoring system based on RF‐shielded NMR probes. The proposed system is largely autonomous and protected against RF contamination. As a consequence the field probes can be positioned freely and permit monitoring imaging procedures of arbitrary geometry and angulation. The T/R approach is also exploited to simplify probe manufacturing and remove constraints on material choices. Probe miniaturization permits monitoring imaging scans with nominal resolutions on the order of 400 μm. The added capabilities of the new probes and system are demonstrated by first in vivo results, obtained with monitored gradient‐echo and spin‐echo echo‐planar imaging (EPI) scans. Magn Reson Med, 2009. © 2009 Wiley‐Liss, Inc.     

Accelerated point spread function mapping using signal modeling for accurate echo‐planar imaging geometric distortion correction

Echo‐planar imaging is a fast and commonly used magnetic resonance imaging technique with applications in diffusion weighted and functional MRI. Fast data acquisition in echo‐planar imaging is accomplished by the extended readout, which also introduces sensitivity to off‐resonance effects such as amplitude of static (polarizing) field inhomogeneities and eddy‐currents. These off‐resonance effects produce geometric distortions in the corresponding echo‐planar images. To correct for these distortions, an acceleration of point spread function (PSF) acquisition using a special sampling pattern is presented in this work. The proposed technique allows for reliable and fully automated distortion correction of echo‐planar images at a field strength of 3 T. Additionally, a new approach to visualize and determine the distortions in a hybrid (x, y, k_PSF) three‐dimensional space is proposed. The accuracy and robustness of the proposed technique is demonstrated in phantom and in vivo experiments. The accuracy of the presented method here is compared to previous techniques for echo‐planar imaging distortion correction such as PLACE. Magn Reson Med, 2013. © 2012 Wiley Periodicals, Inc.