脊髓性肌萎缩症SMN1基因定量研究及基因携带者的筛查

目的进行脊髓性肌萎缩症（spinal muscular atrophy，SMA）基因携带者的筛查，为遗传咨询提供理论依据。方法应用实时荧光定量PCR特异性扩增264名健康人、88例经基因诊断确诊SMA患者的双亲、32名SMA家系其它成员的SMN1基因第7外显子及其邻近区域，以已确定只有2拷贝SMN1的样品作为标准对照。结果88例确诊SMA患者双亲除4名SMN1拷贝数为2外，其余均只有1拷贝SMN1。264名正常人中5人仅有1拷贝SMN1，为基因携带者，该组中含2、3、4拷贝SMN1的人数分别为232、25、2。32名SMA家系成员中有2名SMN1拷贝数为1，为基因携带者，25名SMN1拷贝数为2，另5名拷贝数为3。结论实时荧光定量PCR技术可进行单拷贝差异SMN1基因的定量检测，结果准确、重复性好，基因携带者的筛查为本病遗传咨询提供了重要依据。     

Determination of cytochrome P450 2D6 (CYP2D6) gene copy number by real-time quantitative PCR

Gene dosage by real-time quantitative PCR has proved to be accurate for measuring gene copy number. The aim of this study was to apply this approach to the CYP2D6 gene to allow for rapid identification of poor and ultrarapid metabolizers (0, 1, or more than 2 gene copy number). Using the 2(-Delta Delta Ct) calculation method and a duplex reaction, the number of CYP2D6 gene copies was determined. Quantitative PCR was performed on 43 samples previously analyzed by Southern blotting and long PCR including 20 samples with a heterozygous deletion, 11 with normal copy number (2 copies), and 12 samples with duplicated genes. The average ratio ranged from 1.02 to 1.28, 1.85 to 2.21, and 2.55 to 3.30, respectively, for the samples with 1 copy, 2 copies, and 3 copies. This study shows that this method is sensitive enough to detect either a heterozygous gene deletion or duplication.     

脊髓性肌萎缩临床表型与SMN2基因拷贝数变化的相关性研究

目的探讨脊髓性肌萎缩（spinal muscular atrophy，SMA）的临床表型与运动神经元生存基因（survival motor neuron，SMN）拷贝数变化之间是否存在相关性。方法应用TaqMan技术的实时荧光定量PCR方法对57例不同临床表型的SMA患者的SMN2基因拷贝数进行检测。结果预测拷贝数为1的SM／Ve基因的平均拷贝数为1．017±0．090，变异系数（coefficient of variation，CV）值8．9％；预测拷贝数为2的SMN2基因的平均拷贝数为2．019±0．080，CV值3．9％；预测拷贝数为3的SMN2基因的平均拷贝数为3．104±0．170，CV值5．4％。Ⅰ型SMA患者SMNe基因平均拷贝数为1．926±0．460，Ⅱ型为2．508±0．460，Ⅲ型为2．876±0．270。Ⅱ型SMA患者SMN2平均拷贝数明显高于Ⅰ型（t=4．24，P〈0．01），Ⅲ型SMA患者SMN2平均拷贝数明显高于Ⅱ型（t=2．44，P〈0．01）。85．72％Ⅰ型SMA患者SMN2以2个拷贝为主；Ⅱ型SMA以2个和3个拷贝为主，分别占40％和60％；82％的Ⅲ型SMA则以3个拷贝为主。结论SMA临床表型的变化与SMN2基因拷贝数明显相关。不同类型SMA患者㈣拷贝数的分布不同：各型SMA患者至少有1个拷贝的Shine，11和Ⅲ型SMA患者的ShiNe拷贝数多于I型患者。提示疾病的严重程度依赖于SMN2拷贝数的变化。     

Quantification of genital human immunodeficiency virus type 1 (HIV-1) DNA in specimens from women with low plasma HIV-1 RNA levels typical of HIV-1 nontransmitters

Studies of human immunodeficiency virus type 1 (HIV-1) transmission suggest that genital HIV-1 RNA and DNA may both be determinants of HIV-1 infectivity. Despite its potential role in HIV-1 transmission, there are limited quantitative data on genital HIV-1 DNA. Here we validated an in-house real-time PCR method for quantification of HIV-1 DNA in genital specimens. In reactions with 100 genomes to 1 genome isolated from a cell line containing one HIV-1 provirus/cell, this real-time PCR assay is linear and agrees closely with a commercially available real-time PCR assay specific for a cellular housekeeping gene. In mock genital samples spiked with low numbers of HIV-1-infected cells such that the expected HIV-1 DNA copy number/reaction was 100, 10, or 5, the average copy number/reaction was 80.2 (standard deviation [SD], 28.3), 9.1 (SD, 5.4), or 3.1 (SD, 2.1), respectively. We used this method to examine genital HIV-1 DNA levels in specimens from women whose low plasma HIV-1 RNA levels are typical of HIV-1 nontransmitters. The median HIV-1 DNA copy number in endocervical secretions from these women (1.8 HIV-1 DNA copies/10,000 cells) was lower than that for women with higher plasma HIV-1 RNA levels (16.6 HIV-1 DNA copies/10,000 cells) (P=0.04), as was the median HIV-1 DNA copy number in vaginal secretions (undetectable versus 1.0 HIV-1 DNA copies/10,000 cells). These data suggest that women with low plasma HIV-1 RNA and thus a predicted low risk of HIV-1 transmission have low levels of genital HIV-1 cell-associated virus. The assay described here can be utilized in future efforts to examine the role of cell-associated HIV-1 in transmission.     

脊髓性肌萎缩症SMN基因拷贝数定量分析

目的　探讨临床诊断为脊髓性肌萎缩症 (spinal muscular atrophy,SMA)而 PCR定性无运动神经元生存 (survival motor neuron,SMN )基因 T拷贝 (SMN - T)缺失患者的遗传基础 ;并探索 SMA表型与SMN基因 C(SMN- C)拷贝数的关系及 SMA患者及其直系亲属和正常人 SMN基因拷贝数的分布。方法对临床和病理诊断为 SMA ～ 型及少见型 4 5例患者、2 5名表型正常的 SMA直系亲属进行 SMN- T和SMN- C基因拷贝数定量分析 ,并与 33名正常人进行对比 ;所有对象均已经 PCR Dra 酶切法定性检测SMN基因 ,其中 ～ 型的 7例和 型的 2例为 SMN- T纯合缺失 ,余者无缺失。建立 SMN- T和囊性纤维化跨膜调节因子 (cystic fibrosis transmembrane conductance regulator,CFTR)的内标 ,所有标本进行非放射性、非荧光标记的多重竞争性 PCR,根据产物 SMN- T/ CFTR和 SMN- C/ CFTR比值 ,计算 SMN- T和SMN - C拷贝数。结果　 7例 ～ 型 SMN - T拷贝数均为 0 ; 型 2例拷贝数为 0 ,2例为 1个拷贝数 ,系杂合缺失 ,4例为 2个拷贝 ; 型及其他型患者均为 2个拷贝 ;直系亲属中 9例为 1个拷贝 ,系杂合缺失 ,其余及正常对照组均为 2个拷贝。SMN - C拷贝数在 SMA 型为≤ 2 , ～ 型为≤ 3, 型及其它型 SMA、直系亲属和正常对照组均为 0～ 3。结     

外源基因在转基因小鼠中整合状况的分析

目的研究外源基因在转基因小鼠及其家系中的整合状况。方法采用PCR、定量PCR和荧光原位杂交(FISH)的方法对原代转基因小鼠中外源人凝血因子Ⅸ(hFⅨ)基因的整合和嵌合情况进行分析。使用PCR、直接测序法鉴定整合的外源基因多拷贝的连接方向和连接方式。结果7个家系中F0-8、F0-10和F0-11的后代中阳性个体比例明显低于50%,3个原代小鼠DNA中hFⅨ基因拷贝数分别只有子代中的66.2%、18.8%和28.3%。F0-11小鼠各脏器中嵌合比差异极大,且未见胚系特异性分布。不同个体间整合拷贝数差异极大,最少的F0-69为单拷贝,最多的F0-10有43个拷贝。而整合位点分析发现外源基因在随机分布中仍呈现一定的趋向性。PCR和测序结果证明所有小鼠中外源基因多拷贝均为头尾连接,连接的机制以粘性末端介导的连接为主,F0-13中还存在同源序列配对、断裂、修复介导的头尾连接。结论在整合有hFⅨ基因的转基因小鼠中多拷贝外源基因多以粘性末端介导的头尾连接方式整合在染色体的某些特定区域。     

New estimation method for highly sensitive quantitation of human immunodeficiency virus type 1 DNA and its application

A new estimation method for quantitation of HIV-1 DNA was established by introducing a pre-quantitation polymerase chain reaction (PCR) before conventional real-time PCR. Two alternative methods for estimating the copy number can be used: the first method utilizes the rate of beta2-microglobulin (beta2M) gene amplification during the pre-quantitation PCR, and the second utilizes a calibration curve of the crossing point of real-time PCR versus the standard HIV-1-plasmid concentration. These methods could be used to reproducibly and accurately detect a provirus density down to five copies/10(6) cells (for methods 1 and 2, inter-assay CV=17 and 16% and accuracy=81 and 92%, respectively). The levels of HIV-1 DNA could be measurable using as little as 100 microl of whole blood or buffy coat cells. Using a combination of a conventional and highly sensitive methods, we found that the amount of HIV-1 DNA ranged from 2 to 5960 copies/10(6) cells (median of 830 copies/10(6) cells) in CD4-positive T lymphocytes isolated from 30 patients responding well to highly active antiretroviral therapy (HAART). Thus, the highly sensitive method developed in this study allows estimation of the HIV-1 reservoirs in peripheral CD4-positive T lymphocytes of patients responding well to HAART.     

A simple screening method for detection of Klinefelter syndrome and other X-chromosome aneuploidies based on copy number of the androgen receptor gene

Due to the high prevalence and variable phenotype of patients with Klinefelter syndrome, there is a need for a robust and rapid screening method allowing early diagnosis. Here, we report on the development and detailed clinical validation of a quantitative real-time PCR (qPCR)-based method of the copy number assessment of the androgen receptor (AR) gene, located to Xq11.2-q12. We analysed samples from 50 individuals, including a healthy male and female controls and patients with Klinefelter syndrome (47,XXY; 48,XXXY) (n = 28), mosaicisms (46,XX/47,XXY/48XXYY; 45,X/46,XY) (n = 3), other sex chromosome abnormalities (46,XX males; 47,XYY)(n = 4) and normal karyotypes (46,XY) (n = 13). The reference range for the AR-copy number was established as 0.8-1.2 for one copy and 1.7-2.3 for two copies. The qPCR results were within the reference range in 17/18 samples (94%) or 30/31 (97%) samples with one or two copies of the AR gene, respectively. None of the Klinefelter patients were misdiagnosed as having a karyotype with only one X-chromosome, and in none of the 46,XY males were two copies demonstrated. We systematically compared qPCR results with those obtained with another PCR-based method, the XIST-gene expression. The XIST-expression based assay was correct in only 29/36 samples (81%). Our findings demonstrated that the AR-qPCR technique is a simple and reliable screening method for diagnosis of patients with Klinefelter syndrome or other chromosomal disorders involving an aberrant number of X-chromosomes.     

Herpes simplex virus thymidine kinase gene is stably maintained and expressed in cells transformed by protoplast fusion

We examined a series of transformed cell lines resulting from transfer of the herpes simplex virus type 1 thymidine kinase gene to Ltk^– cells by protoplast fusion gene transfer. We show that multiple copies of the transforming plasmid DNA, ranging from a minimum of two to greater than 20, were present in one or at most a few integration sites in each cell line. The TK⁺ phenotype was stable in five independent transformed cell lines after growth in nonselective medium for over a year. Transforming plasmid DNA was stable in one cell line containing from two to five copies after a year of growth in nonselective medium. In another cell line initially containing about 20 copies, the transforming DNA became rearranged soon after growth to mass culture, resulting in a decrease to two to five copies which then remained stably maintained. This suggests that TK⁺ transformants resulting from protoplast fusion are stable when the input DNA has integrated in a relatively low copy number.     

Quantitative analysis of human herpesvirus 8 viral load using a real-time PCR assay

We have developed a quantitative real-time PCR (TaqMan) assay aimed at measuring the cellular human herpesvirus 8 (HHV-8) DNA load in various clinical samples. Standard curves were obtained by serial dilutions of a control plasmid containing both HHV-8 (ORF73 gene) and the cellular target (human albumin gene). The assay appeared to be very sensitive (100% detection rate for at least 10 copies per well) and specific and was easily reproducible (less than 3% intra-assay variability, 5% interassay variability). This method allowed us to quantify precisely the average HHV-8 copy number per cell in various persistently HHV-8-infected cell lines (BBG-1 cells, n = 200; BC-1 cells, n = 59; BCBL-1 cells, n = 70). A retrospective study was also conducted to assess the HHV-8 DNA load in 12 human immunodeficiency virus-infected patients with either Kaposi's sarcoma (KS; seven patients monitored over a 3-month period) or multicentric Castleman's disease (MCD; five patients). The HHV-8 DNA load ranged from 0 to 9,171 copies/10(6) cells in low-risk KS patients (T0, I0, S0 according to the classification of the AIDS Clinical Trials group). We also measured the viral loads in MCD patients either during symptomatic periods or during remission. The results are in agreement with previously published data, with high viral loads correlating with clinical symptoms (1.3 x 10(6) copies/10(6) cells) and low viral loads correlating with asymptomatic periods (less than 5,000 copies/10(6) cells).     

Real-time PCR as a new tool for quantifying Leishmania infantum in liver in infected mice.

The parasitic loads of mouse livers experimentally infected with Leishmania infantum were determined using a double real-time quantitative PCR test targeted to the parasite DNA polymerase gene and to the mouse brain-derived neutrophic factor gene. The Leishmania DNA copy number was normalized to the number of mouse gene copies in order to quantify the former independently of liver weight. The correlation coefficient with the microtitration method was 0.66. This PCR assay can be considered for experimental pharmaceutical studies.     

白纹伊蚊β-肌动蛋白实时定量PCR方法的建立与分析

采用T-A克隆技术,在白纹伊蚊β-肌动蛋白的基因序列上设计引物,PCR扩增后将特异性产物连入T载体中,提取质粒,经测序分析验证后,测定浓度,稀释获得标准品,采用SYBR green法进行实时定量PCR,并绘制标准曲线,作为白纹伊蚊各种基因实时定量PCR检测中的内参照物.结果表明：利用此标准品制备的标准曲线具有较高的扩增效率和良好的线性关系（斜率为-3.3287,R2=0.9980）;实时定量PCR熔解曲线分析表明,温度在83℃±0.5℃的PCR产物是白纹伊蚊肌动蛋白序列上的特异性产物,表明此标准品是白纹伊蚊肌动蛋白特异性的.本实验成功建立白纹伊蚊β-actin基因实时定量PCR方法,可作为内参照物运用于白纹伊蚊基因差异表达的研究.     

Characterization of genomically amplified segments using PCR: optimizing relative-PCR for reliable and simple gene expression and gene copy analyses

Gene amplification is one of the mechanisms for oncogene activation in solid tumors. The size of the amplified regions may vary considerably among individual tumors, and more than one gene may be affected within the same amplicon. The main objective in analyzing genomic amplifications has therefore been to map the shortest region involved and to identify genes with increased expression as a result of the increased gene copy number. To facilitate such an analysis, we have developed simple polymerase chain reaction (PCR) procedures using the internal standards beta-actin (ACTB) and L1Hs for gene expression and gene copy number analyses, respectively. We used cDNA derived from pancreatic carcinoma cell lines, and genomic DNA extracted from the same cell lines, as templates in the gene expression and in the gene copy number analyses, respectively. To determine the optimal number of PCR cycles, dilution series of the templates were made. Furthermore, competing primers were used to adjust for differences in target sequence levels. We show that by these simple means it is possible to determine optimal conditions for expression analyses. In addition, the procedure was adapted for the analysis of gene copy number changes at the genomic level using L1Hs as the internal standard. This PCR method makes it possible to produce detailed gene copy number profiles of amplified genomic regions.     

Development of real-time PCR assays for quantitation of simian betaretrovirus serotype-1, -2, -3, and -5 viral DNA in Asian monkeys

Simian betaretroviruses (SRV), formerly known as simian type D retroviruses, are endemic in many populations of Asian monkeys of the genus Macaca. Asian monkeys have been used extensively as animal models for preclinical HIV vaccine development, therapeutics, and other biomedical studies. SRV infection can sometimes lead to immune deficiency disease, which complicates such studies; thus, it is important to screen for SRV infection and remove infected animals from test populations. Real-time PCR assays were developed to specifically quantify SRV-1/3, SRV-2, and SRV-5 proviral DNA. The SRV provirus copy numbers were standardized relative to real-time PCR measurements of the rhesus macaque albumin gene. The primers and TaqMan probe sequences for the rhesus macaque (Indian origin) albumin gene also detect cynomolgus macaque and rhesus macaque (Chinese origin) albumin genes. The SRV primers and probes were designed to amplify gag gene sequences of SRV-1/3 (GeneBank accession number M11841), SRV-2 (GeneBank accession number M16605), and SRV-5 (GeneBank accession number AF252389). The optimized reactions for detection of each SRV serotype and the macaque albumin gene had amplification efficiencies of greater than 90% with a linear range spanning 1 x 10(1) to 2.5 x 10(6) copies per reaction. The R(2) values of all standard curves were greater than 0.995. Of 40 animals housed in quarantine, four animals were positive for SRV-1/3 with 28, 5450, 9780, and 14,500 copies of provirus per 10(6) PBMCs, and one animal was positive for SRV-2 with provirus copy number of 7790 per 10(6) PBMCs. All of 40 animals appeared to be seronegative and had normal CD4(+) and CD8(+) T-cell counts. These quantitative real-time PCR assays enhance the detection and quantitation of SRV infection and will facilitate the elimination of this virus from macaque colonies.     

Homozygous SMN2 deletion is a protective factor in the Swedish ALS population

Abnormal survival motor neuron 1 (SMN1)-copy number has been associated with an increased risk of amyotrophic lateral sclerosis (ALS) in French and Dutch population studies. The aim of this study was to determine whether SMN gene copy number increases the risk of ALS or modulates its phenotype in a cohort of Swedish sporadic ALS (SALS) patients. In all, 502 Swedes with SALS and 502 Swedish controls matched for gender and age were enrolled. SMN1 and SMN2 gene copy numbers were studied by a semi-quantitative PCR method. A genotype-phenotype comparison was performed in order to determine whether SMN genes modulate the phenotype of ALS. The results were also compared with our previously reported French cohort of ALS patients. There was no difference between Swedish patients and controls in the frequency of SMN1 and SMN2 copy numbers. The frequency of SMN1 gene copies differed significantly between the French and Swedish ALS populations. The duration of the disease was significantly longer in the Swedish cohort with homozygous deletions of SMN2 when compared with the French cohort. Abnormal SMN1 gene copy number cannot be considered as a universal genetic susceptibility factor for SALS and this result underlines the importance of reproducing association gene studies in groups from different origins. We also suggest that SMN2 gene copy number might have different effects on ALS progression in disparate human populations.     

Inverse correlation between SMN1 and SMN2 copy numbers: evidence for gene conversion from SMN2 to SMN1

Most carriers of autosomal recessive spinal muscular atrophy (SMA) have only one copy of SMN1 because of SMN1 gene deletions or gene conversions from SMN1 to SMN2, which has only one base difference in coding sequence from SMN1. Using SMN gene dosage analysis, we determined the copy numbers of SMN1 and SMN2 in the general population as well as in SMA patients and carriers. Increased SMN1 copy number is associated with decreased SMN2 copy number in the general population; that is, SMN2 copy number was decreased to one or zero copies in 11 of 13 individuals with three or four copies of SMN1, whereas only 71 of 164 individuals with two copies of SMN1 had one or zero copies of SMN2 (P<0.01). SMN2 copy number was increased to three or four in a subset of SMN1 deletion/conversion carriers, and in most SMA patients with a milder phenotype. In conclusion, our data provide evidence that gene conversion from SMN2 to SMN1 occurs, and that SMN1 converted from SMN2 is present in the general population.     

Detection of Listeria monocytogenes in food using a combined enrichment/real-time PCR method targeting the prfA gene

A combined enrichment/real-time PCR method for the detection of Listeria monocytogenes is presented. The method is based on a conventional PCR assay targeting the prfA gene, which has been validated and suggested as an international standard PCR method for identifying L. monocytogenes in food. This real-time PCR assay includes an internal amplification control. Inclusivity and exclusivity were 100% each when testing 100 L. monocytogenes isolates, 30 Listeria spp. isolates other than L. monocytogenes, and 29 non-Listeria isolates. The theoretical detection limit was one copy of the target gene per PCR reaction and the practical detection limit was about 5 copies per PCR. Using the combined enrichment/real-time PCR method, 7.5 CFU/25 ml of artificially contaminated raw milk, and 9, 1, and 1 CFU/15 g of artificially contaminated salmon, paté, and green-veined cheese, respectively, were detected. When analyzing 76 naturally contaminated food samples of various types and comparing the results with the ISO 11290-1 standard method, the relative accuracy was 96%, the relative specificity 100%, and the relative sensitivity, 76.9%.     

常染色体显性小脑性共济失调致病基因动态突变位点三核苷酸重复变异的研究

目的 探讨毛细管电泳技术在动态突变位点检测中的技术问题,并分析常染色体显性小脑性共济失调(autosomal dominant cerebellar ataxias,ADCA)患者与正常对照人群脊髓小脑性共济失调(spinocerebellar ataxia,SCA)1,2,3,6,7亚型的致病基因动态突变位点三核苷酸重复数的分布范围,以期为今后标准化ADCA基因检测技术及中国人群制定相关基因动态突变量化标准提供依据.方法 以263个ADCA家系的先证者及261个无亲缘关系的正常对照为对象,应用荧光PCR-毛细管电泳及DNA测序技术进行上述SCA致病基因内动态突变位点基因分型,统计分析不同对照下各基因动态突变位点毛细管电泳检测重复数与DNA测序结果的差异,以及各基因三核苷酸重复特点及重复次数分布范围.结果 以DNA测序所确定的重复次数为标准,SCA各致病基因动态突变位点的PCR产物在毛细管电泳中,迁移率均大于GC含量相对均衡的分子量内标片段,其中SCA2、6、7亚型基因位点尤为明显.以各基因已知CAG重复数片段为外标计算受检标本CAG重复数,可将误差缩小至±1个拷贝.在各基因CAG正常重复范围内,PCR产物毛细管电泳迁移率主要与CAG拷贝数相关,而与CAG拷贝数变异所致PCR产物GC含量变化的关系不明显.在263个ADCA家系中,发现SCA1家系6个(2.28%),SCA2家系8个(3.04%),SCA3家系81个(30.80%),未发现SCA6和SCA7家系.排除上述突变基因后,正常等位基因重复次数变异范围在SCA1为17～36次,杂合率为76.1%,SCA2为13～30次,杂合率为17.7%,SCA3为14～39次,杂合率为74.4%,SCA6为6～16次,杂合率为72.1%,SCA7为6～13次,杂合率为41.3%.突变等位基因重复次数变化范围在SCA1为49～56次,SCA2为36～41次,SCA3为59～81次.未发现单一位点纯合突变或两位点双重杂合突变患者.结论 通过设置有限数量的已知拷贝数对照,进行荧光PCR-毛细管电泳检测,可以准确地计算出SCA致病基因动态突变位点CAG重复次数.本研究结果支持中国人群中SCA3致病基因突变是导致ADCA的最常见病因.SCA1,2,3,6,7亚型致病基因正常与突变的CAG重复数资料可为中国人ADCA动态突变量化标准的建立提供参考.     

Screening of copy number polymorphisms in human beta-defensin genes using modified real-time quantitative PCR

Defensins are cationic antimicrobial peptides, which play an important role in host immune defense to some infectious diseases as well as immune disease and skin disease. Recent studies identified that the genes coding for human beta-defensin 2 (DEFB4), human beta-defensin 3 (DEFB103) and human beta-defensin 4 (DEFB104) showed variation in copy numbers. This variation may have an impact on gene expression levels. Here, we have demonstrated a real-time PCR-based method to measure beta-defensin gene copy number. Using this relative real-time quantitative PCR, we developed a new rapid and reliable approach, which involves amplification of the target locus (DEFB4 or DEFB103 or DEFB104) and the single-copy reference locus (human serum albumin, ALB) in a single PCR reaction. A calibrator was prepared by recombining one copy of the target gene and one copy of the reference gene into a plasmid. After correcting the PCR amplification efficiency, which differed between the defensin gene and ALB gene, and normalization by the calibrator, the ratio of the copy number of the target gene to that of the reference gene in an unknown sample was determined. This normalized ratio directly related to the gene copy number. The assay was validated using previously genotyped samples, which demonstrated high accuracy and reliability of the method. Furthermore, this method was used to screen the copy number variations of these three beta-defensin genes in healthy blood donors. This method proved to be a reliable and fast tool to genotype gene copy number variations in projects associating genomic variations with gene expression or with population phenotypes in epidemiologic studies.     

登革热病毒RNA实时荧光定量RT-PCR检测方法的建立

目的建立TaqMan探针实时荧光定量RT-PCR方法,测定登革热病毒（DV）及DV病毒的RNA拷贝数。方法利用TaqMan探针,建立实时荧光定量RT-PCR方法,通过对登革热病毒RNA定量外标准品的定量分析,优化反应体系,检测TaqMan探针实时荧光定量RT-PCR方法的灵敏度、特异性和重复性。结果该方法检测灵敏度可达1×103copies/mL,特异性及重复性良好,对同一样品进行5次重复检测,其循环阈值的平均标准偏差为0.792。结论TaqMan探针实时荧光定量RT-PCR法特异性、敏感性高,稳定性好,可用于定量测定登革热病毒及DVRNA载量。