Screening and characterization of mutations in isoniazid-resistant Mycobacterium tuberculosis isolates obtained in Brazil |
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| Authors: | Cardoso Rosilene Fressatti Cooksey Robert C Morlock Glenn P Barco Patricia Cecon Leticia Forestiero Francisco Leite Clarice Q F Sato Daisy N Shikama Maria de Lourdes Mamizuka Elsa M Hirata Rosario D C Hirata Mario H |
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| Affiliation: | Department of Clincal Analysis, State University of Maringá, Paraná, Brazil. |
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| Abstract: | We investigated mutations in the genes katG, inhA (regulatory and structural regions), and kasA and the oxyR-ahpC intergenic region of 97 isoniazid (INH)-resistant and 60 INH-susceptible Mycobacterium tuberculosis isolates obtained in two states in Brazil: São Paulo and Paraná. PCR-single-strand conformational polymorphism (PCR-SSCP) was evaluated for screening mutations in regions of prevalence, including codons 315 and 463 of katG, the regulatory region and codons 16 and 94 of inhA, kasA, and the oxyR-ahpC intergenic region. DNA sequencing of PCR amplicons was performed for all isolates with altered PCR-SSCP profiles. Mutations in katG were found in 83 (85.6%) of the 97 INH-resistant isolates, including mutations in codon 315 that occurred in 60 (61.9%) of the INH-resistant isolates and 23 previously unreported katG mutations. Mutations in the inhA promoter region occurred in 25 (25.8%) of the INH-resistant isolates; 6.2% of the isolates had inhA structural gene mutations, and 10.3% had mutations in the oxyR-ahpC intergenic region (one, nucleotide −48, previously unreported). Polymorphisms in the kasA gene occurred in both INH-resistant and INH-susceptible isolates. The most frequent polymorphism encoded a G269A substitution. Although KatG315 substitutions are predominant, novel mutations also appear to be responsible for INH resistance in the two states in Brazil. Since ca. 90.7% of the INH-resistant isolates had mutations identified by SSCP electrophoresis, this method may be a useful genotypic screen for INH resistance.Isoniazid (INH), a first-line antituberculosis drug, is bactericidal and has a simple chemical structure consisting of a pyridine ring and a hydrazide group. INH is a prodrug that enters actively growing tubercle bacilli by passive diffusion (2). The bifunctional bacterial enzyme catalase-peroxidase (KatG) converts INH to a range of oxygenated and organic toxic radicals that attack multiple targets in the mycobacterial cell (35, 36, 48). The best-characterized target of these radicals is the cell wall mycolic acid, but DNA, carbohydrates, lipids, and NAD metabolism may be targeted as well (16, 36, 50).The tuberculosis case rate in Brazil is the 15th highest in the world, with an estimated prevalence of 64 cases per 100,000 population; moreover, ∼0.9% of the new cases are multidrug resistant (45). A recent nationwide investigation of primary INH resistance found a national frequency of 3.8% (29); however, the percentages varied greatly between geographic regions of the country. The incidence of tuberculosis cases in Brazil also varies widely among geographic regions, with 18,112 new reported cases in São Paulo State (51.40 cases per 100,000 population) in 1998 (38) and 2,684 new cases in Paraná State (28.99 cases per 100,000 population) in the same year (37).Molecular studies of the mechanisms of resistance to INH in Mycobacterium tuberculosis demonstrated that a significant number of drug-resistant strains have mutations in the katG gene, which encodes the KatG enzyme. Initial investigations of katG found large deletions in resistant strains (48, 49), but subsequent studies showed this to be rare. Mutations reduce the ability of KatG to activate the prodrug INH, thus leading to resistance (11, 17, 24, 42). In addition, mutations in other genes, including inhA and kasA, and in the oxyR-ahpC intergenic region have been associated with INH resistance but in much lower percentages of strains (26, 32, 33, 50).An activated INH radical appears to inhibit the InhA enzyme by reacting with the NAD(H) cofactor bound to the InhA active site, which compromises the mycolic acid synthesis (23). Mutation at the InhA enzyme''s site of interaction can reduce its affinity for NAD(H) and confer INH and ethionamide resistance to strains (1). The overexpression of InhA because of an upregulation mutation in the promoter region of inhA (preceding the mabA-inhA operon) can also cause resistance to INH by a titration mechanism (1, 2, 3, 8, 16, 23). Mutations in the oxyR-ahpC intergenic region, where the putative promoter of ahpC is located, are considered to be a compensatory mechanism for the loss of KatG function in resistant strains (18, 33, 35, 46, 47). These mutations may be used as surrogate markers for the detection of INH resistance in M. tuberculosis (33, 39, 41, 50).Mdluli et al. (25) reported that the ketoacyl acyl carrier protein synthase (KasA), encoded by the kasA gene, which is involved in the biosynthesis of mycolic acids, is a likely target for INH. They found an association between mutations in the kasA gene and resistance to INH in M. tuberculosis. However, Lee et al. (22) observed mutations in the kasA gene in resistant and in susceptible M. tuberculosis strains from Singapore. Recently, Larsen et al. (21) demonstrated no correlation between resistance to INH and overexpression of KasA.A variety of methods have been used to facilitate the rapid detection of mutations in mycobacteria. One widely used method is PCR-single-strand conformational polymorphism (PCR-SSCP) (7, 28, 43). If any two single strands of DNA differ by one or more nucleotides, differences in the secondary structure of these strands may be identified by their electrophoretic mobilities in nondenaturing polyacrylamide gels (9), offering a convenient and cost-efficient method for analyzing mutations in PCR products. The PCR-SSCP method has been demonstrated to be useful for screening mutations associated with antituberculosis drug resistance (7, 10, 15, 30, 46).We investigated the prevalence of mutations in the genes, katG, kasA, and inhA (regulatory and structural regions) and in the oxyR-ahpC intergenic region. We evaluated the usefulness of SSCP electrophoresis for the detection of those mutations among INH-resistant isolates from São Paulo and Paraná, Brazil. |
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