首页 | 本学科首页   官方微博 | 高级检索  
检索        


Communicating regulatory high-throughput sequencing data using BioCompute Objects
Institution:1. The Department of Biochemistry & Molecular Medicine, The George Washington University Medical Center, Washington, DC 20037, USA;2. The McCormick Genomic and Proteomic Center, The George Washington University, Washington, DC 20037, USA;3. DDL Diagnostic Laboratory, 2288 ER Rijswijk, the Netherlands;4. US Food and Drug Administration, Silver Spring, MD 20993, USA
Abstract:This project demonstrates the use of the IEEE 2791–2020 Standard (BioCompute Objects BCO]) to enable the complete and concise communication of results from next generation sequencing (NGS) analysis. One arm of a clinical trial was replicated using synthetically generated data made to resemble real biological data and then two independent analyses were performed. The first simulated a pharmaceutical regulatory submission to the US Food and Drug Administration (FDA) including analysis of results and a BCO. The second simulated an FDA review that included an independent analysis of the submitted data. Of the 118 simulated patient samples generated, 117 (99.15%) were in agreement in the two analyses. This process exemplifies how a template BCO (tBCO), including a verification kit, facilitates transparency and reproducibility, thereby reinforcing confidence in the regulatory submission process.
Keywords:Next generation sequencing (NGS)  Regulatory submission  BioCompute Objects  HCV1a  Antiviral resistance  Single nucleotide polymorphism (SNP)  Amino acid substitutions
本文献已被 ScienceDirect 等数据库收录!
设为首页 | 免责声明 | 关于勤云 | 加入收藏

Copyright©北京勤云科技发展有限公司  京ICP备09084417号