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Recent Advances in Pathology: the 2019 Annual Review Issue of The Journal of Pathology

Authors:	C Simon Herrington Richard Poulsom Philip J Coates

Institution:	1. Edinburgh Cancer Research Centre, Institute of Genetics and Molecular Medicine, University of Edinburgh, Edinburgh, UK;2. The Pathological Society, London, UK;3. RECAMO, Masaryk Memorial Cancer Institute, Brno, Czech Republic

Abstract:	In this Annual Review Issue of The Journal of Pathology, we present 15 invited reviews on topical aspects of pathology, ranging from the impacts of the microbiome in human disease through mechanisms of cell death and autophagy to recent advances in immunity and the uses of genomics for understanding, classifying and treating human cancers. Each of the reviews is authored by experts in their fields and our intention is to provide comprehensive updates in specific areas of pathology in which there has been considerable recent progress. Copyright © 2019 Pathological Society of Great Britain and Ireland. Published by John Wiley & Sons, Ltd.

Keywords:	melanoma cutaneous desmoplastic acral uveal mucosal mutations driver genes biomarkers prognostic predictive lung cancer small cell lung cancer pathology molecular genetics in vitro models breast cancer index EndoPredict (EPclin) MammaPrint MapQuantDx OncotypeDX PD-1 PD-L1 prosigna breast cancer genomic signatures prognostic signatures triple negative breast cancer tumour-infiltrating lymphocytes urothelial carcinoma muscle-invasive bladder cancer basal-like bladder cancer hedgehog PPARgamma TGFbeta cancer stem cell GATA3 KRT5 TP53 RB1 hereditary colorectal cancer familial adenomatous polyposis lynch syndrome cancer predisposition cancer syndromes polyposis mismatch repair microsatellite instability cancer genes variants of uncertain significance VUS chemoprevention checkpoint inhibitors immune-oncology innate immunity hypoxia myeloid-derived suppressor cells neutrophil extracellular traps dysbiosis radiation DNA damage response interferon abscopal response fibroblasts macrophages biobank bioinformatics inflammation microbiota population health science statistics translational research liquid biopsy circulating tumour DNA (ctDNA) Epstein–Barr virus nasopharyngeal carcinoma screening massively parallel sequencing size-based diagnostics multiplexed immunohistochemistry NanoString in situ hybridisation tissue biomarkers tumour microenvironment multiplexed ion beam imaging imaging mass cytometry extracellular matrix matrix metalloproteinase metastasis protease tumour invasion tumour progression neutrophils lymphatic system adaptive immunity autoimmunity chronic inflammation ARDS apoptosis chemokine interleukin leukotriene DAMP PAMP toll-like receptor reactive oxygen species lung development type 2 immunity alveolarisation bronchopulmonary dysplasia Group 2 innate lymphoid cells ILC2 postnatal development stem cells respiratory infection necroptosis MLKL pyroptosis gasdermin apoptosis ferroptosis caspase-3 acute kidney injury transplantation severe inflammatory response syndrome autophagy mitochondria stem cells drug resistance CD44 FoxO3A dormancy quiescence

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