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Epidemiology of Influenza Virus Types and Subtypes in South Africa, 2009–2012
Authors:Adam L Cohen  Orienka Hellferscee  Marthi Pretorius  Florette Treurnicht  Sibongile Walaza  Shabir Madhi  Michelle Groome  Halima Dawood  Ebrahim Variava  Kathleen Kahn  Nicole Wolter  Anne von Gottberg  Stefano Tempia  Marietjie Venter  Cheryl Cohen
Abstract:To determine clinical and epidemiologic differences between influenza caused by different virus types and subtypes, we identified patients and tested specimens. Patients were children and adults hospitalized with confirmed influenza and severe acute respiratory illness (SARI) identified through active, prospective, hospital-based surveillance from 2009–2012 in South Africa. Respiratory specimens were tested, typed, and subtyped for influenza virus by PCR. Of 16,005 SARI patients tested, 1,239 (8%) were positive for influenza virus. Patient age and co-infections varied according to virus type and subtype, but disease severity did not. Case-patients with influenza B were more likely than patients with influenza A to be HIV infected. A higher proportion of case-patients infected during the first wave of the 2009 influenza pandemic were 5–24 years of age (19%) than were patients infected during the second wave (9%). Although clinical differences exist, treatment recommendations do not differ according to subtype; prevention through vaccination is recommended.
Keywords:influenza  influenza A  influenza B  H3N2  H1N1  types  subtypes  pneumonia  South Africa  viruses
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